data_5MXK # _model_server_result.job_id xvHAi6Dxz7jw6wa89rUYzw _model_server_result.datetime_utc '2024-10-20 03:56:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5MXK # _exptl.entry_id 5MXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MXK _cell.length_a 121.199 _cell.length_b 121.199 _cell.length_c 33.738 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 121.199 -121.199 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5MXK _atom_sites.fract_transf_matrix[1][1] 0.008251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZHA A 1 301 1 ZHA LIG . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 4 HOH A 1 401 24 HOH HOH . E 4 HOH A 2 402 67 HOH HOH . E 4 HOH A 3 403 71 HOH HOH . E 4 HOH A 4 404 49 HOH HOH . E 4 HOH A 5 405 7 HOH HOH . E 4 HOH A 6 406 47 HOH HOH . E 4 HOH A 7 407 9 HOH HOH . E 4 HOH A 8 408 38 HOH HOH . E 4 HOH A 9 409 43 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 2 HOH HOH . E 4 HOH A 12 412 11 HOH HOH . E 4 HOH A 13 413 3 HOH HOH . E 4 HOH A 14 414 75 HOH HOH . E 4 HOH A 15 415 5 HOH HOH . E 4 HOH A 16 416 29 HOH HOH . E 4 HOH A 17 417 27 HOH HOH . E 4 HOH A 18 418 42 HOH HOH . E 4 HOH A 19 419 20 HOH HOH . E 4 HOH A 20 420 12 HOH HOH . E 4 HOH A 21 421 21 HOH HOH . E 4 HOH A 22 422 74 HOH HOH . E 4 HOH A 23 423 17 HOH HOH . E 4 HOH A 24 424 8 HOH HOH . E 4 HOH A 25 425 52 HOH HOH . E 4 HOH A 26 426 46 HOH HOH . E 4 HOH A 27 427 69 HOH HOH . E 4 HOH A 28 428 4 HOH HOH . E 4 HOH A 29 429 30 HOH HOH . E 4 HOH A 30 430 1 HOH HOH . E 4 HOH A 31 431 58 HOH HOH . E 4 HOH A 32 432 33 HOH HOH . E 4 HOH A 33 433 22 HOH HOH . E 4 HOH A 34 434 32 HOH HOH . E 4 HOH A 35 435 37 HOH HOH . E 4 HOH A 36 436 55 HOH HOH . E 4 HOH A 37 437 50 HOH HOH . E 4 HOH A 38 438 61 HOH HOH . E 4 HOH A 39 439 25 HOH HOH . E 4 HOH A 40 440 19 HOH HOH . E 4 HOH A 41 441 54 HOH HOH . E 4 HOH A 42 442 18 HOH HOH . E 4 HOH A 43 443 51 HOH HOH . E 4 HOH A 44 444 39 HOH HOH . E 4 HOH A 45 445 6 HOH HOH . E 4 HOH A 46 446 63 HOH HOH . E 4 HOH A 47 447 44 HOH HOH . E 4 HOH A 48 448 13 HOH HOH . E 4 HOH A 49 449 16 HOH HOH . E 4 HOH A 50 450 26 HOH HOH . E 4 HOH A 51 451 14 HOH HOH . E 4 HOH A 52 452 34 HOH HOH . E 4 HOH A 53 453 15 HOH HOH . E 4 HOH A 54 454 53 HOH HOH . E 4 HOH A 55 455 40 HOH HOH . E 4 HOH A 56 456 76 HOH HOH . E 4 HOH A 57 457 35 HOH HOH . E 4 HOH A 58 458 68 HOH HOH . E 4 HOH A 59 459 59 HOH HOH . E 4 HOH A 60 460 36 HOH HOH . E 4 HOH A 61 461 65 HOH HOH . E 4 HOH A 62 462 77 HOH HOH . E 4 HOH A 63 463 48 HOH HOH . E 4 HOH A 64 464 70 HOH HOH . E 4 HOH A 65 465 73 HOH HOH . E 4 HOH A 66 466 23 HOH HOH . E 4 HOH A 67 467 64 HOH HOH . E 4 HOH A 68 468 45 HOH HOH . E 4 HOH A 69 469 57 HOH HOH . E 4 HOH A 70 470 81 HOH HOH . E 4 HOH A 71 471 72 HOH HOH . E 4 HOH A 72 472 79 HOH HOH . E 4 HOH A 73 473 56 HOH HOH . E 4 HOH A 74 474 41 HOH HOH . E 4 HOH A 75 475 28 HOH HOH . E 4 HOH A 76 476 78 HOH HOH . E 4 HOH A 77 477 60 HOH HOH . E 4 HOH A 78 478 80 HOH HOH . E 4 HOH A 79 479 66 HOH HOH . E 4 HOH A 80 480 31 HOH HOH . E 4 HOH A 81 481 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 118.073 16.59 -0.309 1 47.87 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 3 117.655 16.354 0.978 1 46.26 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 3 118.774 15.314 -0.646 1 51.82 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 3 118.612 15.122 -2.043 1 65.82 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #