data_5MXW # _model_server_result.job_id ZmsydyBEaGvKCfaR0aXWmQ _model_server_result.datetime_utc '2024-11-08 03:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":218}' # _entry.id 5MXW # _exptl.entry_id 5MXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MXW _cell.length_a 74.4 _cell.length_b 74.4 _cell.length_c 67.31 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 31 A PRO 31 1_555 R NA NA . A NA 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A O VAL 34 A VAL 34 1_555 R NA NA . A NA 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A O ILE 37 A ILE 37 1_555 R NA NA . A NA 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 R NA NA . A NA 217 1_555 U O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc5 R NA NA . A NA 217 1_555 U O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C13 H16 N2 O2' _chem_comp.formula_weight 232.278 _chem_comp.id ML1 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Melatonin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 ML1 sing 205 n n C1 N1 ML1 sing 206 n n C1 H11 ML1 sing 207 n n C1 H12A ML1 sing 208 n n C2 C7 ML1 doub 209 n y C2 H2 ML1 sing 210 n n C3 H31 ML1 sing 211 n n C3 H32 ML1 sing 212 n n C3 H33 ML1 sing 213 n n C4 N1 ML1 sing 214 n n C5 C4 ML1 sing 215 n n C5 H51 ML1 sing 216 n n C5 H52 ML1 sing 217 n n C5 H53 ML1 sing 218 n n C6 H61 ML1 sing 219 n n C6 H62 ML1 sing 220 n n C8 C9 ML1 sing 221 n y C8 C7 ML1 sing 222 n y C9 H9 ML1 sing 223 n n C12 C11 ML1 doub 224 n y C12 C13 ML1 sing 225 n y C12 H12 ML1 sing 226 n n C13 C8 ML1 doub 227 n y C7 C6 ML1 sing 228 n n C10 O1 ML1 sing 229 n n C10 C9 ML1 doub 230 n y C11 C10 ML1 sing 231 n y C11 H111 ML1 sing 232 n n N1 HN1 ML1 sing 233 n n N2 C13 ML1 sing 234 n y N2 C2 ML1 sing 235 n y O1 C3 ML1 sing 236 n n O2 C4 ML1 doub 237 n n N2 H16 ML1 sing 238 n n # _atom_sites.entry_id 5MXW _atom_sites.fract_transf_matrix[1][1] 0.013442 _atom_sites.fract_transf_matrix[1][2] 0.007761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 201 201 UNL UNL . C 2 UNL A 1 202 202 UNL UNL . D 2 UNL A 1 203 203 UNL UNL . E 2 UNL A 1 204 204 UNL UNL . F 2 UNL A 1 205 205 UNL UNL . G 2 UNL A 1 206 206 UNL UNL . H 2 UNL A 1 207 207 UNL UNL . I 2 UNL A 1 208 208 UNL UNL . J 2 UNL A 1 209 209 UNL UNL . K 2 UNL A 1 210 210 UNL UNL . L 2 UNL A 1 211 211 UNL UNL . M 2 UNL A 1 212 212 UNL UNL . N 2 UNL A 1 213 213 UNL UNL . O 2 UNL A 1 214 214 UNL UNL . P 2 UNL A 1 215 215 UNL UNL . Q 2 UNL A 1 216 216 UNL UNL . R 3 NA A 1 217 217 NA NA . S 4 ML1 A 1 218 218 ML1 ML1 . T 5 ZEA A 1 219 219 ZEA ZEA . U 6 HOH A 1 301 301 HOH HOH . U 6 HOH A 2 302 302 HOH HOH . U 6 HOH A 3 303 303 HOH HOH . U 6 HOH A 4 304 304 HOH HOH . U 6 HOH A 5 305 305 HOH HOH . U 6 HOH A 6 306 306 HOH HOH . U 6 HOH A 7 307 307 HOH HOH . U 6 HOH A 8 308 308 HOH HOH . U 6 HOH A 9 309 309 HOH HOH . U 6 HOH A 10 310 310 HOH HOH . U 6 HOH A 11 311 311 HOH HOH . U 6 HOH A 12 312 312 HOH HOH . U 6 HOH A 13 313 313 HOH HOH . U 6 HOH A 14 314 314 HOH HOH . U 6 HOH A 15 315 315 HOH HOH . U 6 HOH A 16 316 316 HOH HOH . U 6 HOH A 17 317 317 HOH HOH . U 6 HOH A 18 318 318 HOH HOH . U 6 HOH A 19 319 319 HOH HOH . U 6 HOH A 20 320 320 HOH HOH . U 6 HOH A 21 321 321 HOH HOH . U 6 HOH A 22 322 322 HOH HOH . U 6 HOH A 23 323 323 HOH HOH . U 6 HOH A 24 324 324 HOH HOH . U 6 HOH A 25 325 325 HOH HOH . U 6 HOH A 26 326 326 HOH HOH . U 6 HOH A 27 327 327 HOH HOH . U 6 HOH A 28 328 328 HOH HOH . U 6 HOH A 29 329 329 HOH HOH . U 6 HOH A 30 330 330 HOH HOH . U 6 HOH A 31 331 331 HOH HOH . U 6 HOH A 32 332 332 HOH HOH . U 6 HOH A 33 333 333 HOH HOH . U 6 HOH A 34 334 334 HOH HOH . U 6 HOH A 35 335 335 HOH HOH . U 6 HOH A 36 336 336 HOH HOH . U 6 HOH A 37 337 337 HOH HOH . U 6 HOH A 38 338 338 HOH HOH . U 6 HOH A 39 339 339 HOH HOH . U 6 HOH A 40 340 340 HOH HOH . U 6 HOH A 41 341 341 HOH HOH . U 6 HOH A 42 342 342 HOH HOH . U 6 HOH A 43 343 343 HOH HOH . U 6 HOH A 44 344 344 HOH HOH . U 6 HOH A 45 345 345 HOH HOH . U 6 HOH A 46 346 346 HOH HOH . U 6 HOH A 47 347 347 HOH HOH . U 6 HOH A 48 348 348 HOH HOH . U 6 HOH A 49 349 349 HOH HOH . U 6 HOH A 50 350 350 HOH HOH . U 6 HOH A 51 351 351 HOH HOH . U 6 HOH A 52 352 352 HOH HOH . U 6 HOH A 53 353 353 HOH HOH . U 6 HOH A 54 354 354 HOH HOH . U 6 HOH A 55 355 355 HOH HOH . U 6 HOH A 56 356 356 HOH HOH . U 6 HOH A 57 357 357 HOH HOH . U 6 HOH A 58 358 358 HOH HOH . U 6 HOH A 59 359 359 HOH HOH . U 6 HOH A 60 360 360 HOH HOH . U 6 HOH A 61 361 361 HOH HOH . U 6 HOH A 62 362 362 HOH HOH . U 6 HOH A 63 363 363 HOH HOH . U 6 HOH A 64 364 364 HOH HOH . U 6 HOH A 65 365 365 HOH HOH . U 6 HOH A 66 366 366 HOH HOH . U 6 HOH A 67 367 367 HOH HOH . U 6 HOH A 68 368 368 HOH HOH . U 6 HOH A 69 369 369 HOH HOH . U 6 HOH A 70 370 370 HOH HOH . U 6 HOH A 71 371 371 HOH HOH . U 6 HOH A 72 372 372 HOH HOH . U 6 HOH A 73 373 373 HOH HOH . U 6 HOH A 74 374 374 HOH HOH . U 6 HOH A 75 375 375 HOH HOH . U 6 HOH A 76 376 376 HOH HOH . U 6 HOH A 77 377 377 HOH HOH . U 6 HOH A 78 378 378 HOH HOH . U 6 HOH A 79 379 379 HOH HOH . U 6 HOH A 80 380 380 HOH HOH . U 6 HOH A 81 381 381 HOH HOH . U 6 HOH A 82 382 382 HOH HOH . U 6 HOH A 83 383 383 HOH HOH . U 6 HOH A 84 384 384 HOH HOH . U 6 HOH A 85 385 385 HOH HOH . U 6 HOH A 86 386 386 HOH HOH . U 6 HOH A 87 387 387 HOH HOH . U 6 HOH A 88 388 388 HOH HOH . U 6 HOH A 89 389 389 HOH HOH . U 6 HOH A 90 390 390 HOH HOH . U 6 HOH A 91 391 391 HOH HOH . U 6 HOH A 92 392 392 HOH HOH . U 6 HOH A 93 393 393 HOH HOH . U 6 HOH A 94 394 394 HOH HOH . U 6 HOH A 95 395 395 HOH HOH . U 6 HOH A 96 396 396 HOH HOH . U 6 HOH A 97 397 397 HOH HOH . U 6 HOH A 98 398 398 HOH HOH . U 6 HOH A 99 399 399 HOH HOH . U 6 HOH A 100 400 400 HOH HOH . U 6 HOH A 101 401 401 HOH HOH . U 6 HOH A 102 402 402 HOH HOH . U 6 HOH A 103 403 403 HOH HOH . U 6 HOH A 104 404 404 HOH HOH . U 6 HOH A 105 405 405 HOH HOH . U 6 HOH A 106 406 406 HOH HOH . U 6 HOH A 107 407 407 HOH HOH . U 6 HOH A 108 408 408 HOH HOH . U 6 HOH A 109 409 409 HOH HOH . U 6 HOH A 110 410 410 HOH HOH . U 6 HOH A 111 411 411 HOH HOH . U 6 HOH A 112 412 412 HOH HOH . U 6 HOH A 113 413 413 HOH HOH . U 6 HOH A 114 414 414 HOH HOH . U 6 HOH A 115 415 415 HOH HOH . U 6 HOH A 116 416 416 HOH HOH . U 6 HOH A 117 417 417 HOH HOH . U 6 HOH A 118 418 418 HOH HOH . U 6 HOH A 119 419 419 HOH HOH . U 6 HOH A 120 420 420 HOH HOH . U 6 HOH A 121 421 421 HOH HOH . U 6 HOH A 122 422 422 HOH HOH . U 6 HOH A 123 423 423 HOH HOH . U 6 HOH A 124 424 424 HOH HOH . U 6 HOH A 125 425 425 HOH HOH . U 6 HOH A 126 426 426 HOH HOH . U 6 HOH A 127 427 427 HOH HOH . U 6 HOH A 128 428 428 HOH HOH . U 6 HOH A 129 429 429 HOH HOH . U 6 HOH A 130 430 430 HOH HOH . U 6 HOH A 131 431 431 HOH HOH . U 6 HOH A 132 432 432 HOH HOH . U 6 HOH A 133 433 433 HOH HOH . U 6 HOH A 134 434 434 HOH HOH . U 6 HOH A 135 435 435 HOH HOH . U 6 HOH A 136 436 436 HOH HOH . U 6 HOH A 137 437 437 HOH HOH . U 6 HOH A 138 438 438 HOH HOH . U 6 HOH A 139 439 439 HOH HOH . U 6 HOH A 140 440 440 HOH HOH . U 6 HOH A 141 441 441 HOH HOH . U 6 HOH A 142 442 442 HOH HOH . U 6 HOH A 143 443 443 HOH HOH . U 6 HOH A 144 444 444 HOH HOH . U 6 HOH A 145 445 445 HOH HOH . U 6 HOH A 146 446 446 HOH HOH . U 6 HOH A 147 447 447 HOH HOH . U 6 HOH A 148 448 448 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ML1 . . . S 4 114.461 94.015 -1.23 1 29.62 ? C1 ML1 218 A 1 HETATM 2 C C2 ML1 . . . S 4 115.967 93.025 1.787 1 22.32 ? C2 ML1 218 A 1 HETATM 3 C C3 ML1 . . . S 4 109.453 93.875 2.13 1 42.67 ? C3 ML1 218 A 1 HETATM 4 C C4 ML1 . . . S 4 113.218 93.731 -3.356 1 39.49 ? C4 ML1 218 A 1 HETATM 5 C C5 ML1 . . . S 4 113.199 93.125 -4.714 1 43.18 ? C5 ML1 218 A 1 HETATM 6 C C6 ML1 . . . S 4 114.409 92.867 -0.352 1 25.72 ? C6 ML1 218 A 1 HETATM 7 C C8 ML1 . . . S 4 113.817 93.445 2.099 1 21.47 ? C8 ML1 218 A 1 HETATM 8 C C9 ML1 . . . S 4 112.404 93.638 1.99 1 26.22 ? C9 ML1 218 A 1 HETATM 9 C C12 ML1 . . . S 4 113.849 93.813 4.518 1 25.4 ? C12 ML1 218 A 1 HETATM 10 C C13 ML1 . . . S 4 114.484 93.552 3.316 1 25.63 ? C13 ML1 218 A 1 HETATM 11 C C7 ML1 . . . S 4 114.768 93.16 1.074 1 23.96 ? C7 ML1 218 A 1 HETATM 12 C C10 ML1 . . . S 4 111.766 93.914 3.137 1 34.81 ? C10 ML1 218 A 1 HETATM 13 C C11 ML1 . . . S 4 112.491 93.999 4.368 1 28.95 ? C11 ML1 218 A 1 HETATM 14 N N1 ML1 . . . S 4 114.256 93.444 -2.591 1 36.87 ? N1 ML1 218 A 1 HETATM 15 N N2 ML1 . . . S 4 115.754 93.303 3.092 1 22.77 ? N2 ML1 218 A 1 HETATM 16 O O1 ML1 . . . S 4 110.39 94.101 3.177 1 41.74 ? O1 ML1 218 A 1 HETATM 17 O O2 ML1 . . . S 4 112.253 94.375 -2.932 1 39.94 ? O2 ML1 218 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #