data_5MXZ
#
_model_server_result.job_id            WcxGdnK_tcKbZi5NOPa-hw 
_model_server_result.datetime_utc      '2024-10-10 00:22:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mxz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":212}' 
#
_entry.id    5MXZ 
#
_exptl.entry_id    5MXZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MXZ 
_cell.length_a            47.52 
_cell.length_b            47.52 
_cell.length_c            99.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MXZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 13 A CYS 43 1_555 B CAB HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? 
covale ? covale2 A SG CYS 16 A CYS 46 1_555 B CAC HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? 
metalc ? metalc1 A NE2 HIS 12 A HIS 42 1_555 J ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc2 A NE2 HIS 17 A HIS 47 1_555 B FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 A OD1 ASP 25 A ASP 55 1_555 M ZN ZN . A ZN 211 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc4 A OE2 GLU 28 A GLU 58 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc5 A OD2 ASP 37 A ASP 67 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc6 A OE1 GLU 39 A GLU 69 1_555 D ZN ZN . A ZN 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc7 A OD1 ASP 46 A ASP 76 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc8 A OD2 ASP 46 A ASP 76 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc9 A OD1 ASP 46 A ASP 76 1_555 F ZN ZN . A ZN 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc10 A OD2 ASP 46 A ASP 76 1_555 F ZN ZN . A ZN 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc11 A OE1 GLU 47 A GLU 77 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc12 A OE2 GLU 47 A GLU 77 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc13 A OE1 GLU 51 A GLU 81 1_555 G ZN ZN . A ZN 205 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc14 A OE2 GLU 51 A GLU 81 1_555 H ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc15 A OE1 GLU 55 A GLU 85 1_555 G ZN ZN . A ZN 205 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc16 A OE2 GLU 59 A GLU 89 1_555 E ZN ZN . A ZN 203 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc17 A SD MET 61 A MET 91 1_555 B FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc18 A OE1 GLU 66 A GLU 96 1_555 D ZN ZN . A ZN 202 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc19 A OE1 GLU 71 A GLU 101 1_555 C ZN ZN . A ZN 201 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc20 A OE2 GLU 71 A GLU 101 1_555 C ZN ZN . A ZN 201 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc21 B O1D HEC . A HEC 200 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc22 C ZN ZN . A ZN 201 1_555 T O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc23 C ZN ZN . A ZN 201 1_555 T O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc24 C ZN ZN . A ZN 201 1_555 T O HOH . A HOH 335 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc25 E ZN ZN . A ZN 203 1_555 T O HOH . A HOH 301 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc26 E ZN ZN . A ZN 203 1_555 T O HOH . A HOH 303 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc27 E ZN ZN . A ZN 203 1_555 T O HOH . A HOH 306 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc28 E ZN ZN . A ZN 203 1_555 T O HOH . A HOH 356 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc29 F ZN ZN . A ZN 204 1_555 S O ACT . A ACT 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc30 F ZN ZN . A ZN 204 1_555 S O ACT . A ACT 217 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc31 G ZN ZN . A ZN 205 1_555 T O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc32 K ZN ZN . A ZN 209 1_555 T O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc33 M ZN ZN . A ZN 211 1_555 T O HOH . A HOH 301 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc34 M ZN ZN . A ZN 211 1_555 T O HOH . A HOH 303 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     5MXZ 
_atom_sites.fract_transf_matrix[1][1]    0.021044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 200 200 HEC H99 . 
C 3 ZN A 1 201 201 ZN ZN . 
D 3 ZN A 1 202 202 ZN ZN . 
E 3 ZN A 1 203 203 ZN ZN . 
F 3 ZN A 1 204 204 ZN ZN . 
G 3 ZN A 1 205 205 ZN ZN . 
H 3 ZN A 1 206 206 ZN ZN . 
I 3 ZN A 1 207 207 ZN ZN . 
J 3 ZN A 1 208 208 ZN ZN . 
K 3 ZN A 1 209 209 ZN ZN . 
L 3 ZN A 1 210 210 ZN ZN . 
M 3 ZN A 1 211 211 ZN ZN . 
N 4 EDO A 1 212 212 EDO EDO . 
O 4 EDO A 1 213 213 EDO EDO . 
P 4 EDO A 1 214 214 EDO EDO . 
Q 4 EDO A 1 215 215 EDO EDO . 
R 4 EDO A 1 216 216 EDO EDO . 
S 5 ACT A 1 217 217 ACT ACT . 
T 6 HOH A 1 301 279 HOH HOH . 
T 6 HOH A 2 302 237 HOH HOH . 
T 6 HOH A 3 303 264 HOH HOH . 
T 6 HOH A 4 304 230 HOH HOH . 
T 6 HOH A 5 305 269 HOH HOH . 
T 6 HOH A 6 306 281 HOH HOH . 
T 6 HOH A 7 307 223 HOH HOH . 
T 6 HOH A 8 308 244 HOH HOH . 
T 6 HOH A 9 309 267 HOH HOH . 
T 6 HOH A 10 310 227 HOH HOH . 
T 6 HOH A 11 311 255 HOH HOH . 
T 6 HOH A 12 312 253 HOH HOH . 
T 6 HOH A 13 313 261 HOH HOH . 
T 6 HOH A 14 314 246 HOH HOH . 
T 6 HOH A 15 315 221 HOH HOH . 
T 6 HOH A 16 316 247 HOH HOH . 
T 6 HOH A 17 317 274 HOH HOH . 
T 6 HOH A 18 318 225 HOH HOH . 
T 6 HOH A 19 319 268 HOH HOH . 
T 6 HOH A 20 320 241 HOH HOH . 
T 6 HOH A 21 321 220 HOH HOH . 
T 6 HOH A 22 322 233 HOH HOH . 
T 6 HOH A 23 323 252 HOH HOH . 
T 6 HOH A 24 324 224 HOH HOH . 
T 6 HOH A 25 325 232 HOH HOH . 
T 6 HOH A 26 326 258 HOH HOH . 
T 6 HOH A 27 327 265 HOH HOH . 
T 6 HOH A 28 328 276 HOH HOH . 
T 6 HOH A 29 329 263 HOH HOH . 
T 6 HOH A 30 330 277 HOH HOH . 
T 6 HOH A 31 331 278 HOH HOH . 
T 6 HOH A 32 332 245 HOH HOH . 
T 6 HOH A 33 333 271 HOH HOH . 
T 6 HOH A 34 334 226 HOH HOH . 
T 6 HOH A 35 335 222 HOH HOH . 
T 6 HOH A 36 336 235 HOH HOH . 
T 6 HOH A 37 337 243 HOH HOH . 
T 6 HOH A 38 338 242 HOH HOH . 
T 6 HOH A 39 339 228 HOH HOH . 
T 6 HOH A 40 340 259 HOH HOH . 
T 6 HOH A 41 341 257 HOH HOH . 
T 6 HOH A 42 342 251 HOH HOH . 
T 6 HOH A 43 343 234 HOH HOH . 
T 6 HOH A 44 344 239 HOH HOH . 
T 6 HOH A 45 345 250 HOH HOH . 
T 6 HOH A 46 346 249 HOH HOH . 
T 6 HOH A 47 347 256 HOH HOH . 
T 6 HOH A 48 348 229 HOH HOH . 
T 6 HOH A 49 349 262 HOH HOH . 
T 6 HOH A 50 350 254 HOH HOH . 
T 6 HOH A 51 351 272 HOH HOH . 
T 6 HOH A 52 352 270 HOH HOH . 
T 6 HOH A 53 353 283 HOH HOH . 
T 6 HOH A 54 354 273 HOH HOH . 
T 6 HOH A 55 355 282 HOH HOH . 
T 6 HOH A 56 356 280 HOH HOH . 
T 6 HOH A 57 357 231 HOH HOH . 
T 6 HOH A 58 358 266 HOH HOH . 
T 6 HOH A 59 359 260 HOH HOH . 
T 6 HOH A 60 360 275 HOH HOH . 
T 6 HOH A 61 361 248 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 4 3.004 2.107 8.827 1 48.49 ? C1 EDO 212 A 1 
HETATM 2 O O1 EDO . . . N 4 3.077 0.872 8.105 1 48.42 ? O1 EDO 212 A 1 
HETATM 3 C C2 EDO . . . N 4 2.314 1.872 10.166 1 48.84 ? C2 EDO 212 A 1 
HETATM 4 O O2 EDO . . . N 4 3.033 0.873 10.895 1 49.87 ? O2 EDO 212 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#