data_5MYM
#
_model_server_result.job_id            7WJy2qRHNOHJGILAnCUidQ 
_model_server_result.datetime_utc      '2024-10-18 14:36:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    5MYM 
#
_exptl.entry_id    5MYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.01 
_cell.angle_gamma         90 
_cell.entry_id            5MYM 
_cell.length_a            86.622 
_cell.length_b            56.481 
_cell.length_c            98.188 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5MYM 
_atom_sites.fract_transf_matrix[1][1]    0.011544 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HYV B 1 301 1 HYV LIG . 
F 3 EDO B 1 302 1 EDO EDO . 
G 3 EDO B 1 303 4 EDO EDO . 
H 2 HYV C 1 301 2 HYV LIG . 
I 3 EDO C 1 302 2 EDO EDO . 
J 3 EDO C 1 303 3 EDO EDO . 
K 4 HOH A 1 301 216 HOH HOH . 
K 4 HOH A 2 302 234 HOH HOH . 
K 4 HOH A 3 303 100 HOH HOH . 
K 4 HOH A 4 304 15 HOH HOH . 
K 4 HOH A 5 305 181 HOH HOH . 
K 4 HOH A 6 306 11 HOH HOH . 
K 4 HOH A 7 307 85 HOH HOH . 
K 4 HOH A 8 308 227 HOH HOH . 
K 4 HOH A 9 309 40 HOH HOH . 
K 4 HOH A 10 310 22 HOH HOH . 
K 4 HOH A 11 311 82 HOH HOH . 
K 4 HOH A 12 312 4 HOH HOH . 
K 4 HOH A 13 313 26 HOH HOH . 
K 4 HOH A 14 314 9 HOH HOH . 
K 4 HOH A 15 315 66 HOH HOH . 
K 4 HOH A 16 316 243 HOH HOH . 
K 4 HOH A 17 317 69 HOH HOH . 
K 4 HOH A 18 318 31 HOH HOH . 
K 4 HOH A 19 319 57 HOH HOH . 
K 4 HOH A 20 320 21 HOH HOH . 
K 4 HOH A 21 321 159 HOH HOH . 
K 4 HOH A 22 322 14 HOH HOH . 
K 4 HOH A 23 323 17 HOH HOH . 
K 4 HOH A 24 324 84 HOH HOH . 
K 4 HOH A 25 325 203 HOH HOH . 
K 4 HOH A 26 326 71 HOH HOH . 
K 4 HOH A 27 327 60 HOH HOH . 
K 4 HOH A 28 328 34 HOH HOH . 
K 4 HOH A 29 329 222 HOH HOH . 
K 4 HOH A 30 330 162 HOH HOH . 
K 4 HOH A 31 331 247 HOH HOH . 
K 4 HOH A 32 332 24 HOH HOH . 
K 4 HOH A 33 333 145 HOH HOH . 
K 4 HOH A 34 334 58 HOH HOH . 
K 4 HOH A 35 335 131 HOH HOH . 
K 4 HOH A 36 336 107 HOH HOH . 
K 4 HOH A 37 337 80 HOH HOH . 
K 4 HOH A 38 338 254 HOH HOH . 
K 4 HOH A 39 339 160 HOH HOH . 
K 4 HOH A 40 340 39 HOH HOH . 
K 4 HOH A 41 341 104 HOH HOH . 
K 4 HOH A 42 342 196 HOH HOH . 
K 4 HOH A 43 343 128 HOH HOH . 
K 4 HOH A 44 344 44 HOH HOH . 
K 4 HOH A 45 345 88 HOH HOH . 
K 4 HOH A 46 346 149 HOH HOH . 
K 4 HOH A 47 347 45 HOH HOH . 
K 4 HOH A 48 348 165 HOH HOH . 
K 4 HOH A 49 349 220 HOH HOH . 
K 4 HOH A 50 350 190 HOH HOH . 
K 4 HOH A 51 351 106 HOH HOH . 
K 4 HOH A 52 352 180 HOH HOH . 
K 4 HOH A 53 353 233 HOH HOH . 
K 4 HOH A 54 354 95 HOH HOH . 
K 4 HOH A 55 355 248 HOH HOH . 
K 4 HOH A 56 356 173 HOH HOH . 
K 4 HOH A 57 357 244 HOH HOH . 
K 4 HOH A 58 358 208 HOH HOH . 
K 4 HOH A 59 359 204 HOH HOH . 
L 4 HOH B 1 401 242 HOH HOH . 
L 4 HOH B 2 402 7 HOH HOH . 
L 4 HOH B 3 403 6 HOH HOH . 
L 4 HOH B 4 404 56 HOH HOH . 
L 4 HOH B 5 405 62 HOH HOH . 
L 4 HOH B 6 406 135 HOH HOH . 
L 4 HOH B 7 407 93 HOH HOH . 
L 4 HOH B 8 408 29 HOH HOH . 
L 4 HOH B 9 409 46 HOH HOH . 
L 4 HOH B 10 410 19 HOH HOH . 
L 4 HOH B 11 411 10 HOH HOH . 
L 4 HOH B 12 412 235 HOH HOH . 
L 4 HOH B 13 413 23 HOH HOH . 
L 4 HOH B 14 414 77 HOH HOH . 
L 4 HOH B 15 415 30 HOH HOH . 
L 4 HOH B 16 416 1 HOH HOH . 
L 4 HOH B 17 417 43 HOH HOH . 
L 4 HOH B 18 418 217 HOH HOH . 
L 4 HOH B 19 419 137 HOH HOH . 
L 4 HOH B 20 420 42 HOH HOH . 
L 4 HOH B 21 421 64 HOH HOH . 
L 4 HOH B 22 422 164 HOH HOH . 
L 4 HOH B 23 423 36 HOH HOH . 
L 4 HOH B 24 424 188 HOH HOH . 
L 4 HOH B 25 425 20 HOH HOH . 
L 4 HOH B 26 426 98 HOH HOH . 
L 4 HOH B 27 427 52 HOH HOH . 
L 4 HOH B 28 428 37 HOH HOH . 
L 4 HOH B 29 429 184 HOH HOH . 
L 4 HOH B 30 430 238 HOH HOH . 
L 4 HOH B 31 431 79 HOH HOH . 
L 4 HOH B 32 432 194 HOH HOH . 
L 4 HOH B 33 433 35 HOH HOH . 
L 4 HOH B 34 434 59 HOH HOH . 
L 4 HOH B 35 435 228 HOH HOH . 
L 4 HOH B 36 436 91 HOH HOH . 
L 4 HOH B 37 437 178 HOH HOH . 
L 4 HOH B 38 438 121 HOH HOH . 
L 4 HOH B 39 439 50 HOH HOH . 
L 4 HOH B 40 440 214 HOH HOH . 
L 4 HOH B 41 441 5 HOH HOH . 
L 4 HOH B 42 442 32 HOH HOH . 
L 4 HOH B 43 443 51 HOH HOH . 
L 4 HOH B 44 444 54 HOH HOH . 
L 4 HOH B 45 445 96 HOH HOH . 
L 4 HOH B 46 446 94 HOH HOH . 
L 4 HOH B 47 447 229 HOH HOH . 
L 4 HOH B 48 448 246 HOH HOH . 
L 4 HOH B 49 449 187 HOH HOH . 
L 4 HOH B 50 450 237 HOH HOH . 
L 4 HOH B 51 451 226 HOH HOH . 
L 4 HOH B 52 452 253 HOH HOH . 
L 4 HOH B 53 453 124 HOH HOH . 
L 4 HOH B 54 454 239 HOH HOH . 
L 4 HOH B 55 455 198 HOH HOH . 
L 4 HOH B 56 456 241 HOH HOH . 
L 4 HOH B 57 457 157 HOH HOH . 
L 4 HOH B 58 458 89 HOH HOH . 
L 4 HOH B 59 459 185 HOH HOH . 
L 4 HOH B 60 460 245 HOH HOH . 
L 4 HOH B 61 461 215 HOH HOH . 
L 4 HOH B 62 462 236 HOH HOH . 
L 4 HOH B 63 463 139 HOH HOH . 
L 4 HOH B 64 464 92 HOH HOH . 
M 4 HOH C 1 401 230 HOH HOH . 
M 4 HOH C 2 402 151 HOH HOH . 
M 4 HOH C 3 403 120 HOH HOH . 
M 4 HOH C 4 404 191 HOH HOH . 
M 4 HOH C 5 405 186 HOH HOH . 
M 4 HOH C 6 406 114 HOH HOH . 
M 4 HOH C 7 407 113 HOH HOH . 
M 4 HOH C 8 408 110 HOH HOH . 
M 4 HOH C 9 409 153 HOH HOH . 
M 4 HOH C 10 410 127 HOH HOH . 
M 4 HOH C 11 411 111 HOH HOH . 
M 4 HOH C 12 412 129 HOH HOH . 
M 4 HOH C 13 413 209 HOH HOH . 
M 4 HOH C 14 414 199 HOH HOH . 
M 4 HOH C 15 415 143 HOH HOH . 
M 4 HOH C 16 416 146 HOH HOH . 
M 4 HOH C 17 417 126 HOH HOH . 
M 4 HOH C 18 418 158 HOH HOH . 
M 4 HOH C 19 419 177 HOH HOH . 
M 4 HOH C 20 420 144 HOH HOH . 
M 4 HOH C 21 421 125 HOH HOH . 
M 4 HOH C 22 422 221 HOH HOH . 
M 4 HOH C 23 423 112 HOH HOH . 
M 4 HOH C 24 424 169 HOH HOH . 
M 4 HOH C 25 425 231 HOH HOH . 
M 4 HOH C 26 426 142 HOH HOH . 
M 4 HOH C 27 427 122 HOH HOH . 
M 4 HOH C 28 428 123 HOH HOH . 
M 4 HOH C 29 429 175 HOH HOH . 
M 4 HOH C 30 430 136 HOH HOH . 
M 4 HOH C 31 431 115 HOH HOH . 
M 4 HOH C 32 432 119 HOH HOH . 
M 4 HOH C 33 433 116 HOH HOH . 
M 4 HOH C 34 434 213 HOH HOH . 
M 4 HOH C 35 435 176 HOH HOH . 
M 4 HOH C 36 436 3 HOH HOH . 
M 4 HOH C 37 437 140 HOH HOH . 
M 4 HOH C 38 438 197 HOH HOH . 
M 4 HOH C 39 439 133 HOH HOH . 
M 4 HOH C 40 440 150 HOH HOH . 
M 4 HOH C 41 441 132 HOH HOH . 
M 4 HOH C 42 442 147 HOH HOH . 
M 4 HOH C 43 443 117 HOH HOH . 
M 4 HOH C 44 444 163 HOH HOH . 
M 4 HOH C 45 445 183 HOH HOH . 
M 4 HOH C 46 446 202 HOH HOH . 
M 4 HOH C 47 447 118 HOH HOH . 
M 4 HOH C 48 448 205 HOH HOH . 
M 4 HOH C 49 449 192 HOH HOH . 
M 4 HOH C 50 450 249 HOH HOH . 
M 4 HOH C 51 451 141 HOH HOH . 
M 4 HOH C 52 452 172 HOH HOH . 
M 4 HOH C 53 453 211 HOH HOH . 
M 4 HOH C 54 454 250 HOH HOH . 
M 4 HOH C 55 455 251 HOH HOH . 
M 4 HOH C 56 456 138 HOH HOH . 
M 4 HOH C 57 457 134 HOH HOH . 
M 4 HOH C 58 458 218 HOH HOH . 
M 4 HOH C 59 459 193 HOH HOH . 
M 4 HOH C 60 460 130 HOH HOH . 
M 4 HOH C 61 461 170 HOH HOH . 
N 4 HOH D 1 301 189 HOH HOH . 
N 4 HOH D 2 302 166 HOH HOH . 
N 4 HOH D 3 303 18 HOH HOH . 
N 4 HOH D 4 304 155 HOH HOH . 
N 4 HOH D 5 305 148 HOH HOH . 
N 4 HOH D 6 306 49 HOH HOH . 
N 4 HOH D 7 307 61 HOH HOH . 
N 4 HOH D 8 308 27 HOH HOH . 
N 4 HOH D 9 309 13 HOH HOH . 
N 4 HOH D 10 310 55 HOH HOH . 
N 4 HOH D 11 311 28 HOH HOH . 
N 4 HOH D 12 312 102 HOH HOH . 
N 4 HOH D 13 313 75 HOH HOH . 
N 4 HOH D 14 314 12 HOH HOH . 
N 4 HOH D 15 315 16 HOH HOH . 
N 4 HOH D 16 316 101 HOH HOH . 
N 4 HOH D 17 317 152 HOH HOH . 
N 4 HOH D 18 318 70 HOH HOH . 
N 4 HOH D 19 319 67 HOH HOH . 
N 4 HOH D 20 320 47 HOH HOH . 
N 4 HOH D 21 321 2 HOH HOH . 
N 4 HOH D 22 322 109 HOH HOH . 
N 4 HOH D 23 323 195 HOH HOH . 
N 4 HOH D 24 324 53 HOH HOH . 
N 4 HOH D 25 325 179 HOH HOH . 
N 4 HOH D 26 326 90 HOH HOH . 
N 4 HOH D 27 327 25 HOH HOH . 
N 4 HOH D 28 328 108 HOH HOH . 
N 4 HOH D 29 329 206 HOH HOH . 
N 4 HOH D 30 330 48 HOH HOH . 
N 4 HOH D 31 331 200 HOH HOH . 
N 4 HOH D 32 332 63 HOH HOH . 
N 4 HOH D 33 333 83 HOH HOH . 
N 4 HOH D 34 334 225 HOH HOH . 
N 4 HOH D 35 335 8 HOH HOH . 
N 4 HOH D 36 336 161 HOH HOH . 
N 4 HOH D 37 337 103 HOH HOH . 
N 4 HOH D 38 338 72 HOH HOH . 
N 4 HOH D 39 339 167 HOH HOH . 
N 4 HOH D 40 340 68 HOH HOH . 
N 4 HOH D 41 341 97 HOH HOH . 
N 4 HOH D 42 342 76 HOH HOH . 
N 4 HOH D 43 343 33 HOH HOH . 
N 4 HOH D 44 344 174 HOH HOH . 
N 4 HOH D 45 345 168 HOH HOH . 
N 4 HOH D 46 346 105 HOH HOH . 
N 4 HOH D 47 347 156 HOH HOH . 
N 4 HOH D 48 348 65 HOH HOH . 
N 4 HOH D 49 349 73 HOH HOH . 
N 4 HOH D 50 350 240 HOH HOH . 
N 4 HOH D 51 351 38 HOH HOH . 
N 4 HOH D 52 352 154 HOH HOH . 
N 4 HOH D 53 353 74 HOH HOH . 
N 4 HOH D 54 354 41 HOH HOH . 
N 4 HOH D 55 355 219 HOH HOH . 
N 4 HOH D 56 356 232 HOH HOH . 
N 4 HOH D 57 357 86 HOH HOH . 
N 4 HOH D 58 358 252 HOH HOH . 
N 4 HOH D 59 359 99 HOH HOH . 
N 4 HOH D 60 360 223 HOH HOH . 
N 4 HOH D 61 361 224 HOH HOH . 
N 4 HOH D 62 362 81 HOH HOH . 
N 4 HOH D 63 363 212 HOH HOH . 
N 4 HOH D 64 364 182 HOH HOH . 
N 4 HOH D 65 365 210 HOH HOH . 
N 4 HOH D 66 366 78 HOH HOH . 
N 4 HOH D 67 367 201 HOH HOH . 
N 4 HOH D 68 368 171 HOH HOH . 
N 4 HOH D 69 369 87 HOH HOH . 
N 4 HOH D 70 370 207 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 23.55 -18.289 24.75 1 45.75 ? C1 EDO 302 B 1 
HETATM 2 O O1 EDO . . . F 3 24.207 -18.893 25.866 1 44.48 ? O1 EDO 302 B 1 
HETATM 3 C C2 EDO . . . F 3 22.098 -18.765 24.694 1 45.67 ? C2 EDO 302 B 1 
HETATM 4 O O2 EDO . . . F 3 21.43 -18.335 25.881 1 52.3 ? O2 EDO 302 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#