data_5MYS # _model_server_result.job_id JR_2nlRgpM_oT3UsjAhDaQ _model_server_result.datetime_utc '2025-01-10 11:54:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5MYS # _exptl.entry_id 5MYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3-fluoranylphenoxy)-~{N}-(4-pyridin-2-yl-1,3-thiazol-2-yl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MYS _cell.length_a 121.549 _cell.length_b 121.549 _cell.length_c 33.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H12 F N3 O2 S' _chem_comp.formula_weight 329.349 _chem_comp.id YP6 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3-fluoranylphenoxy)-~{N}-(4-pyridin-2-yl-1,3-thiazol-2-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 YP6 doub 363 n y C16 C15 YP6 sing 364 n y C17 C18 YP6 sing 365 n y C21 S22 YP6 sing 366 n y C21 C14 YP6 doub 367 n y S22 C12 YP6 sing 368 n y C14 C15 YP6 sing 369 n n C14 N13 YP6 sing 370 n y C15 N20 YP6 doub 371 n y C18 C19 YP6 doub 372 n y C12 N13 YP6 doub 373 n y C12 N11 YP6 sing 374 n n C02 C01 YP6 doub 375 n y C02 C03 YP6 sing 376 n y N20 C19 YP6 sing 377 n y C09 O08 YP6 sing 378 n n C09 C10 YP6 sing 379 n n O08 C03 YP6 sing 380 n n C01 C06 YP6 sing 381 n y C03 C04 YP6 doub 382 n y N11 C10 YP6 sing 383 n n C10 O23 YP6 doub 384 n n C06 C05 YP6 doub 385 n y C04 C05 YP6 sing 386 n y C05 F07 YP6 sing 387 n n C17 H1 YP6 sing 388 n n C21 H2 YP6 sing 389 n n C01 H3 YP6 sing 390 n n C02 H4 YP6 sing 391 n n C04 H5 YP6 sing 392 n n C06 H6 YP6 sing 393 n n C09 H7 YP6 sing 394 n n C09 H8 YP6 sing 395 n n N11 H9 YP6 sing 396 n n C16 H10 YP6 sing 397 n n C18 H11 YP6 sing 398 n n C19 H12 YP6 sing 399 n n # _atom_sites.entry_id 5MYS _atom_sites.fract_transf_matrix[1][1] 0.008227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YP6 A 1 301 1 YP6 LIG . C 3 HOH A 1 401 99 HOH HOH . C 3 HOH A 2 402 11 HOH HOH . C 3 HOH A 3 403 89 HOH HOH . C 3 HOH A 4 404 85 HOH HOH . C 3 HOH A 5 405 86 HOH HOH . C 3 HOH A 6 406 19 HOH HOH . C 3 HOH A 7 407 78 HOH HOH . C 3 HOH A 8 408 29 HOH HOH . C 3 HOH A 9 409 5 HOH HOH . C 3 HOH A 10 410 35 HOH HOH . C 3 HOH A 11 411 25 HOH HOH . C 3 HOH A 12 412 90 HOH HOH . C 3 HOH A 13 413 43 HOH HOH . C 3 HOH A 14 414 33 HOH HOH . C 3 HOH A 15 415 1 HOH HOH . C 3 HOH A 16 416 4 HOH HOH . C 3 HOH A 17 417 26 HOH HOH . C 3 HOH A 18 418 46 HOH HOH . C 3 HOH A 19 419 7 HOH HOH . C 3 HOH A 20 420 16 HOH HOH . C 3 HOH A 21 421 74 HOH HOH . C 3 HOH A 22 422 3 HOH HOH . C 3 HOH A 23 423 98 HOH HOH . C 3 HOH A 24 424 9 HOH HOH . C 3 HOH A 25 425 55 HOH HOH . C 3 HOH A 26 426 36 HOH HOH . C 3 HOH A 27 427 37 HOH HOH . C 3 HOH A 28 428 41 HOH HOH . C 3 HOH A 29 429 45 HOH HOH . C 3 HOH A 30 430 40 HOH HOH . C 3 HOH A 31 431 15 HOH HOH . C 3 HOH A 32 432 12 HOH HOH . C 3 HOH A 33 433 69 HOH HOH . C 3 HOH A 34 434 8 HOH HOH . C 3 HOH A 35 435 32 HOH HOH . C 3 HOH A 36 436 6 HOH HOH . C 3 HOH A 37 437 24 HOH HOH . C 3 HOH A 38 438 21 HOH HOH . C 3 HOH A 39 439 17 HOH HOH . C 3 HOH A 40 440 10 HOH HOH . C 3 HOH A 41 441 52 HOH HOH . C 3 HOH A 42 442 14 HOH HOH . C 3 HOH A 43 443 75 HOH HOH . C 3 HOH A 44 444 31 HOH HOH . C 3 HOH A 45 445 73 HOH HOH . C 3 HOH A 46 446 50 HOH HOH . C 3 HOH A 47 447 39 HOH HOH . C 3 HOH A 48 448 20 HOH HOH . C 3 HOH A 49 449 2 HOH HOH . C 3 HOH A 50 450 34 HOH HOH . C 3 HOH A 51 451 80 HOH HOH . C 3 HOH A 52 452 28 HOH HOH . C 3 HOH A 53 453 68 HOH HOH . C 3 HOH A 54 454 22 HOH HOH . C 3 HOH A 55 455 44 HOH HOH . C 3 HOH A 56 456 66 HOH HOH . C 3 HOH A 57 457 59 HOH HOH . C 3 HOH A 58 458 13 HOH HOH . C 3 HOH A 59 459 72 HOH HOH . C 3 HOH A 60 460 23 HOH HOH . C 3 HOH A 61 461 38 HOH HOH . C 3 HOH A 62 462 49 HOH HOH . C 3 HOH A 63 463 84 HOH HOH . C 3 HOH A 64 464 51 HOH HOH . C 3 HOH A 65 465 62 HOH HOH . C 3 HOH A 66 466 79 HOH HOH . C 3 HOH A 67 467 70 HOH HOH . C 3 HOH A 68 468 83 HOH HOH . C 3 HOH A 69 469 30 HOH HOH . C 3 HOH A 70 470 61 HOH HOH . C 3 HOH A 71 471 81 HOH HOH . C 3 HOH A 72 472 56 HOH HOH . C 3 HOH A 73 473 54 HOH HOH . C 3 HOH A 74 474 87 HOH HOH . C 3 HOH A 75 475 67 HOH HOH . C 3 HOH A 76 476 92 HOH HOH . C 3 HOH A 77 477 82 HOH HOH . C 3 HOH A 78 478 18 HOH HOH . C 3 HOH A 79 479 65 HOH HOH . C 3 HOH A 80 480 77 HOH HOH . C 3 HOH A 81 481 88 HOH HOH . C 3 HOH A 82 482 95 HOH HOH . C 3 HOH A 83 483 64 HOH HOH . C 3 HOH A 84 484 96 HOH HOH . C 3 HOH A 85 485 102 HOH HOH . C 3 HOH A 86 486 100 HOH HOH . C 3 HOH A 87 487 60 HOH HOH . C 3 HOH A 88 488 101 HOH HOH . C 3 HOH A 89 489 63 HOH HOH . C 3 HOH A 90 490 94 HOH HOH . C 3 HOH A 91 491 91 HOH HOH . C 3 HOH A 92 492 48 HOH HOH . C 3 HOH A 93 493 47 HOH HOH . C 3 HOH A 94 494 57 HOH HOH . C 3 HOH A 95 495 58 HOH HOH . C 3 HOH A 96 496 27 HOH HOH . C 3 HOH A 97 497 42 HOH HOH . C 3 HOH A 98 498 97 HOH HOH . C 3 HOH A 99 499 71 HOH HOH . C 3 HOH A 100 500 76 HOH HOH . C 3 HOH A 101 501 53 HOH HOH . C 3 HOH A 102 502 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YP6 . . . B 2 -28.037 -13.298 -1.496 1 78.04 ? C10 YP6 301 A 1 HETATM 2 C C15 YP6 . . . B 2 -26.809 -7.647 -3.688 1 79.29 ? C15 YP6 301 A 1 HETATM 3 C C17 YP6 . . . B 2 -26.391 -5.624 -4.889 1 79.92 ? C17 YP6 301 A 1 HETATM 4 C C21 YP6 . . . B 2 -27.645 -9.594 -4.843 1 63.33 ? C21 YP6 301 A 1 HETATM 5 C C01 YP6 . . . B 2 -31.569 -17.502 -2.064 1 76.49 ? C01 YP6 301 A 1 HETATM 6 C C02 YP6 . . . B 2 -30.59 -16.712 -2.623 1 73.65 ? C02 YP6 301 A 1 HETATM 7 C C03 YP6 . . . B 2 -29.633 -16.138 -1.819 1 66.41 ? C03 YP6 301 A 1 HETATM 8 C C04 YP6 . . . B 2 -29.654 -16.365 -0.45 1 61.28 ? C04 YP6 301 A 1 HETATM 9 C C05 YP6 . . . B 2 -30.643 -17.163 0.104 1 74.08 ? C05 YP6 301 A 1 HETATM 10 C C06 YP6 . . . B 2 -31.601 -17.734 -0.704 1 77.84 ? C06 YP6 301 A 1 HETATM 11 F F07 YP6 . . . B 2 -30.694 -17.403 1.444 1 88.98 ? F07 YP6 301 A 1 HETATM 12 O O08 YP6 . . . B 2 -28.654 -15.348 -2.43 1 68.52 ? O08 YP6 301 A 1 HETATM 13 C C09 YP6 . . . B 2 -28.925 -13.979 -2.529 1 72.88 ? C09 YP6 301 A 1 HETATM 14 N N11 YP6 . . . B 2 -27.401 -11.99 -1.637 1 78.22 ? N11 YP6 301 A 1 HETATM 15 C C12 YP6 . . . B 2 -27.45 -11.029 -2.733 1 76.2 ? C12 YP6 301 A 1 HETATM 16 N N13 YP6 . . . B 2 -27.081 -9.761 -2.627 1 67.65 ? N13 YP6 301 A 1 HETATM 17 C C14 YP6 . . . B 2 -27.166 -8.988 -3.698 1 67.49 ? C14 YP6 301 A 1 HETATM 18 C C16 YP6 . . . B 2 -26.739 -6.967 -4.89 1 81.64 ? C16 YP6 301 A 1 HETATM 19 C C18 YP6 . . . B 2 -26.116 -5.013 -3.679 1 75.07 ? C18 YP6 301 A 1 HETATM 20 C C19 YP6 . . . B 2 -26.2 -5.757 -2.517 1 79.98 ? C19 YP6 301 A 1 HETATM 21 N N20 YP6 . . . B 2 -26.539 -7.038 -2.549 1 82.31 ? N20 YP6 301 A 1 HETATM 22 S S22 YP6 . . . B 2 -27.954 -11.226 -4.377 1 79.91 ? S22 YP6 301 A 1 HETATM 23 O O23 YP6 . . . B 2 -27.845 -13.892 -0.493 1 76.02 ? O23 YP6 301 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #