data_5MYV
#
_model_server_result.job_id            WP1AYwkDz8N_7GO_9yPtAA 
_model_server_result.datetime_utc      '2024-11-22 00:00:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5myv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":712}' 
#
_entry.id    5MYV 
#
_exptl.entry_id    5MYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MYV 
_cell.length_a            188.79 
_cell.length_b            248.99 
_cell.length_c            146.73 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,HB 1 1 
B,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,IB 2 1 
C,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,JB 3 1 
D,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,KB 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 U N N 
? 4 VA N N 
? 4 GB N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5MYV 
_atom_sites.fract_transf_matrix[1][1]    0.005297 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 701 1 SO4 SO4 . 
F 2 SO4 A 1 702 2 SO4 SO4 . 
G 2 SO4 A 1 703 8 SO4 SO4 . 
H 2 SO4 A 1 704 10 SO4 SO4 . 
I 2 SO4 A 1 705 15 SO4 SO4 . 
J 2 SO4 A 1 706 21 SO4 SO4 . 
K 2 SO4 A 1 707 25 SO4 SO4 . 
L 2 SO4 A 1 708 26 SO4 SO4 . 
M 2 SO4 A 1 709 27 SO4 SO4 . 
N 2 SO4 A 1 710 28 SO4 SO4 . 
O 2 SO4 A 1 711 30 SO4 SO4 . 
P 2 SO4 A 1 712 31 SO4 SO4 . 
Q 2 SO4 A 1 713 33 SO4 SO4 . 
R 2 SO4 A 1 714 41 SO4 SO4 . 
S 2 SO4 A 1 715 51 SO4 SO4 . 
T 3 W4A A 1 716 1 W4A LIG . 
U 4 DMS A 1 717 1 DMS DMS . 
V 2 SO4 B 1 701 3 SO4 SO4 . 
W 2 SO4 B 1 702 7 SO4 SO4 . 
X 2 SO4 B 1 703 13 SO4 SO4 . 
Y 2 SO4 B 1 704 16 SO4 SO4 . 
Z 2 SO4 B 1 705 20 SO4 SO4 . 
AA 2 SO4 B 1 706 23 SO4 SO4 . 
BA 2 SO4 B 1 707 32 SO4 SO4 . 
CA 2 SO4 B 1 708 34 SO4 SO4 . 
DA 2 SO4 B 1 709 35 SO4 SO4 . 
EA 2 SO4 B 1 710 36 SO4 SO4 . 
FA 2 SO4 B 1 711 38 SO4 SO4 . 
GA 2 SO4 B 1 712 42 SO4 SO4 . 
HA 2 SO4 B 1 713 43 SO4 SO4 . 
IA 2 SO4 B 1 714 49 SO4 SO4 . 
JA 3 W4A B 1 715 2 W4A LIG . 
KA 2 SO4 C 1 701 4 SO4 SO4 . 
LA 2 SO4 C 1 702 9 SO4 SO4 . 
MA 2 SO4 C 1 703 11 SO4 SO4 . 
NA 2 SO4 C 1 704 14 SO4 SO4 . 
OA 2 SO4 C 1 705 19 SO4 SO4 . 
PA 2 SO4 C 1 706 22 SO4 SO4 . 
QA 2 SO4 C 1 707 37 SO4 SO4 . 
RA 2 SO4 C 1 708 44 SO4 SO4 . 
SA 2 SO4 C 1 709 50 SO4 SO4 . 
TA 2 SO4 C 1 710 52 SO4 SO4 . 
UA 3 W4A C 1 711 3 W4A LIG . 
VA 4 DMS C 1 712 2 DMS DMS . 
WA 2 SO4 D 1 701 5 SO4 SO4 . 
XA 2 SO4 D 1 702 6 SO4 SO4 . 
YA 2 SO4 D 1 703 12 SO4 SO4 . 
ZA 2 SO4 D 1 704 17 SO4 SO4 . 
AB 2 SO4 D 1 705 18 SO4 SO4 . 
BB 2 SO4 D 1 706 24 SO4 SO4 . 
CB 2 SO4 D 1 707 40 SO4 SO4 . 
DB 2 SO4 D 1 708 47 SO4 SO4 . 
EB 2 SO4 D 1 709 48 SO4 SO4 . 
FB 3 W4A D 1 710 4 W4A LIG . 
GB 4 DMS D 1 711 3 DMS DMS . 
HB 5 HOH A 1 801 20 HOH HOH . 
HB 5 HOH A 2 802 53 HOH HOH . 
HB 5 HOH A 3 803 13 HOH HOH . 
HB 5 HOH A 4 804 3 HOH HOH . 
HB 5 HOH A 5 805 16 HOH HOH . 
HB 5 HOH A 6 806 11 HOH HOH . 
HB 5 HOH A 7 807 15 HOH HOH . 
HB 5 HOH A 8 808 35 HOH HOH . 
HB 5 HOH A 9 809 10 HOH HOH . 
HB 5 HOH A 10 810 19 HOH HOH . 
HB 5 HOH A 11 811 14 HOH HOH . 
HB 5 HOH A 12 812 7 HOH HOH . 
HB 5 HOH A 13 813 4 HOH HOH . 
HB 5 HOH A 14 814 18 HOH HOH . 
HB 5 HOH A 15 815 6 HOH HOH . 
HB 5 HOH A 16 816 5 HOH HOH . 
HB 5 HOH A 17 817 9 HOH HOH . 
HB 5 HOH A 18 818 21 HOH HOH . 
HB 5 HOH A 19 819 8 HOH HOH . 
HB 5 HOH A 20 820 55 HOH HOH . 
HB 5 HOH A 21 821 56 HOH HOH . 
HB 5 HOH A 22 822 57 HOH HOH . 
HB 5 HOH A 23 823 17 HOH HOH . 
HB 5 HOH A 24 824 12 HOH HOH . 
HB 5 HOH A 25 825 54 HOH HOH . 
IB 5 HOH B 1 801 37 HOH HOH . 
IB 5 HOH B 2 802 32 HOH HOH . 
IB 5 HOH B 3 803 33 HOH HOH . 
IB 5 HOH B 4 804 27 HOH HOH . 
IB 5 HOH B 5 805 34 HOH HOH . 
IB 5 HOH B 6 806 28 HOH HOH . 
IB 5 HOH B 7 807 36 HOH HOH . 
IB 5 HOH B 8 808 31 HOH HOH . 
IB 5 HOH B 9 809 23 HOH HOH . 
JB 5 HOH C 1 801 41 HOH HOH . 
JB 5 HOH C 2 802 44 HOH HOH . 
JB 5 HOH C 3 803 40 HOH HOH . 
JB 5 HOH C 4 804 38 HOH HOH . 
JB 5 HOH C 5 805 43 HOH HOH . 
JB 5 HOH C 6 806 46 HOH HOH . 
JB 5 HOH C 7 807 29 HOH HOH . 
JB 5 HOH C 8 808 42 HOH HOH . 
JB 5 HOH C 9 809 58 HOH HOH . 
JB 5 HOH C 10 810 45 HOH HOH . 
JB 5 HOH C 11 811 24 HOH HOH . 
JB 5 HOH C 12 812 39 HOH HOH . 
KB 5 HOH D 1 801 48 HOH HOH . 
KB 5 HOH D 2 802 50 HOH HOH . 
KB 5 HOH D 3 803 30 HOH HOH . 
KB 5 HOH D 4 804 47 HOH HOH . 
KB 5 HOH D 5 805 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . VA 4 -80.137 -1.04 -27.026 1 112.25 ? S DMS 712 C 1 
HETATM 2 O O DMS . . . VA 4 -79.081 -0.181 -27.601 1 110.4 ? O DMS 712 C 1 
HETATM 3 C C1 DMS . . . VA 4 -81.343 -1.216 -28.211 1 113.25 ? C1 DMS 712 C 1 
HETATM 4 C C2 DMS . . . VA 4 -79.707 -2.687 -26.888 1 104.16 ? C2 DMS 712 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#