data_5MYW # _model_server_result.job_id MOFbouJNmNjnVloi2oHwtw _model_server_result.datetime_utc '2025-01-10 12:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5myw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5MYW # _exptl.entry_id 5MYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}2-(1,3-benzodioxol-5-yl)benzene-1,2-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MYW _cell.length_a 121.528 _cell.length_b 121.528 _cell.length_c 33.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H12 N2 O2' _chem_comp.formula_weight 228.247 _chem_comp.id WCU _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}2-(1,3-benzodioxol-5-yl)benzene-1,2-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C13 WCU sing 363 n n O15 C16 WCU sing 364 n n C14 C13 WCU doub 365 n y C14 C09 WCU sing 366 n y C13 C12 WCU sing 367 n y N08 C09 WCU sing 368 n n N08 C04 WCU sing 369 n n C09 C10 WCU doub 370 n y C04 C03 WCU doub 371 n y C04 C05 WCU sing 372 n y C03 C02 WCU sing 373 n y C12 O17 WCU sing 374 n n C12 C11 WCU doub 375 n y N07 C05 WCU sing 376 n n C05 C06 WCU doub 377 n y C10 C11 WCU sing 378 n y C02 C01 WCU doub 379 n y C06 C01 WCU sing 380 n y C10 H1 WCU sing 381 n n C01 H2 WCU sing 382 n n C02 H3 WCU sing 383 n n C03 H4 WCU sing 384 n n C06 H5 WCU sing 385 n n N07 H6 WCU sing 386 n n N07 H7 WCU sing 387 n n N08 H8 WCU sing 388 n n C11 H9 WCU sing 389 n n C14 H10 WCU sing 390 n n C16 H11 WCU sing 391 n n O17 C16 WCU sing 392 n n C16 H13 WCU sing 393 n n # _atom_sites.entry_id 5MYW _atom_sites.fract_transf_matrix[1][1] 0.008229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WCU A 1 301 1 WCU LIG . C 3 HOH A 1 401 58 HOH HOH . C 3 HOH A 2 402 55 HOH HOH . C 3 HOH A 3 403 36 HOH HOH . C 3 HOH A 4 404 61 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 37 HOH HOH . C 3 HOH A 7 407 14 HOH HOH . C 3 HOH A 8 408 59 HOH HOH . C 3 HOH A 9 409 56 HOH HOH . C 3 HOH A 10 410 12 HOH HOH . C 3 HOH A 11 411 34 HOH HOH . C 3 HOH A 12 412 13 HOH HOH . C 3 HOH A 13 413 22 HOH HOH . C 3 HOH A 14 414 15 HOH HOH . C 3 HOH A 15 415 3 HOH HOH . C 3 HOH A 16 416 1 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 57 HOH HOH . C 3 HOH A 19 419 44 HOH HOH . C 3 HOH A 20 420 38 HOH HOH . C 3 HOH A 21 421 43 HOH HOH . C 3 HOH A 22 422 54 HOH HOH . C 3 HOH A 23 423 18 HOH HOH . C 3 HOH A 24 424 41 HOH HOH . C 3 HOH A 25 425 10 HOH HOH . C 3 HOH A 26 426 8 HOH HOH . C 3 HOH A 27 427 7 HOH HOH . C 3 HOH A 28 428 47 HOH HOH . C 3 HOH A 29 429 62 HOH HOH . C 3 HOH A 30 430 24 HOH HOH . C 3 HOH A 31 431 5 HOH HOH . C 3 HOH A 32 432 4 HOH HOH . C 3 HOH A 33 433 28 HOH HOH . C 3 HOH A 34 434 63 HOH HOH . C 3 HOH A 35 435 64 HOH HOH . C 3 HOH A 36 436 29 HOH HOH . C 3 HOH A 37 437 11 HOH HOH . C 3 HOH A 38 438 2 HOH HOH . C 3 HOH A 39 439 33 HOH HOH . C 3 HOH A 40 440 45 HOH HOH . C 3 HOH A 41 441 53 HOH HOH . C 3 HOH A 42 442 30 HOH HOH . C 3 HOH A 43 443 20 HOH HOH . C 3 HOH A 44 444 39 HOH HOH . C 3 HOH A 45 445 9 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 32 HOH HOH . C 3 HOH A 48 448 16 HOH HOH . C 3 HOH A 49 449 25 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 31 HOH HOH . C 3 HOH A 52 452 23 HOH HOH . C 3 HOH A 53 453 26 HOH HOH . C 3 HOH A 54 454 49 HOH HOH . C 3 HOH A 55 455 19 HOH HOH . C 3 HOH A 56 456 65 HOH HOH . C 3 HOH A 57 457 51 HOH HOH . C 3 HOH A 58 458 42 HOH HOH . C 3 HOH A 59 459 60 HOH HOH . C 3 HOH A 60 460 21 HOH HOH . C 3 HOH A 61 461 27 HOH HOH . C 3 HOH A 62 462 40 HOH HOH . C 3 HOH A 63 463 52 HOH HOH . C 3 HOH A 64 464 66 HOH HOH . C 3 HOH A 65 465 35 HOH HOH . C 3 HOH A 66 466 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WCU . . . B 2 -7.082 -27.233 4.67 1 72.24 ? C10 WCU 301 A 1 HETATM 2 C C13 WCU . . . B 2 -9.208 -26.897 2.973 1 61.13 ? C13 WCU 301 A 1 HETATM 3 C C01 WCU . . . B 2 -2.364 -27.803 5.224 1 64.56 ? C01 WCU 301 A 1 HETATM 4 C C02 WCU . . . B 2 -3.354 -28.609 4.734 1 66.78 ? C02 WCU 301 A 1 HETATM 5 C C03 WCU . . . B 2 -4.391 -28.048 4.045 1 69.31 ? C03 WCU 301 A 1 HETATM 6 C C04 WCU . . . B 2 -4.444 -26.699 3.872 1 69 ? C04 WCU 301 A 1 HETATM 7 C C05 WCU . . . B 2 -3.446 -25.893 4.373 1 62.58 ? C05 WCU 301 A 1 HETATM 8 C C06 WCU . . . B 2 -2.408 -26.452 5.049 1 59.67 ? C06 WCU 301 A 1 HETATM 9 N N07 WCU . . . B 2 -3.421 -24.467 4.207 1 59.1 ? N07 WCU 301 A 1 HETATM 10 N N08 WCU . . . B 2 -5.568 -26.178 3.144 1 73.29 ? N08 WCU 301 A 1 HETATM 11 C C09 WCU . . . B 2 -6.897 -26.623 3.458 1 69.09 ? C09 WCU 301 A 1 HETATM 12 C C11 WCU . . . B 2 -8.327 -27.669 5.017 1 73.44 ? C11 WCU 301 A 1 HETATM 13 C C12 WCU . . . B 2 -9.391 -27.487 4.152 1 67.31 ? C12 WCU 301 A 1 HETATM 14 C C14 WCU . . . B 2 -7.95 -26.447 2.599 1 54.22 ? C14 WCU 301 A 1 HETATM 15 O O15 WCU . . . B 2 -10.438 -26.847 2.335 1 68.08 ? O15 WCU 301 A 1 HETATM 16 C C16 WCU . . . B 2 -11.356 -27.537 3.094 1 74.04 ? C16 WCU 301 A 1 HETATM 17 O O17 WCU . . . B 2 -10.721 -27.844 4.288 1 75.43 ? O17 WCU 301 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #