data_5MYY # _model_server_result.job_id x-fIm3G4rJNNUagzOR6kgQ _model_server_result.datetime_utc '2024-11-22 17:10:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5myy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5MYY # _exptl.entry_id 5MYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MYY _cell.length_a 78.74 _cell.length_b 78.74 _cell.length_c 37.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc1 A OE1 GLU 35 A GLU 35 1_555 K CD CD . A CD 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 A OE2 GLU 35 A GLU 35 1_555 K CD CD . A CD 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc3 A OD2 ASP 52 A ASP 52 1_555 B CD CD . A CD 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A OD1 ASP 52 A ASP 52 1_555 C CD CD . A CD 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc5 A OD1 ASP 52 A ASP 52 1_555 C CD CD . A CD 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 A OD2 ASP 52 A ASP 52 1_555 C CD CD . A CD 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 A OD2 ASP 52 A ASP 52 1_555 C CD CD . A CD 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A O SER 60 A SER 60 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 A O CYS 64 A CYS 64 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 A OD1 ASN 65 A ASN 65 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc11 A OG SER 72 A SER 72 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc12 A O ARG 73 A ARG 73 1_555 V NA NA . A NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc13 A O CYS 76 A CYS 76 1_555 H CD CD . A CD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc14 A O LEU 129 A LEU 129 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc15 B CD CD . A CD 201 1_555 X O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc16 B CD CD . A CD 201 1_555 X O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc17 B CD CD . A CD 201 1_555 X O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc18 B CD CD . A CD 201 1_555 X O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc19 C CD CD . A CD 202 1_555 X O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc20 C CD CD . A CD 202 1_555 X O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc21 D CD CD . A CD 203 1_555 X O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc22 D CD CD . A CD 203 1_555 X O HOH . A HOH 406 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc23 E CD CD . A CD 204 1_555 X O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc24 E CD CD . A CD 204 1_555 X O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc25 F CD CD . A CD 205 1_555 X O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc26 G CD CD . A CD 206 1_555 X O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc27 H CD CD . A CD 207 1_555 X O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc28 H CD CD . A CD 207 1_555 X O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc29 K CD CD . A CD 210 1_555 X O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc30 K CD CD . A CD 210 1_555 X O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc31 V NA NA . A NA 221 1_555 X O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc32 V NA NA . A NA 221 1_555 X O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MYY _atom_sites.fract_transf_matrix[1][1] 0.0127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 1 CD CD . C 2 CD A 1 202 2 CD CD . D 2 CD A 1 203 3 CD CD . E 2 CD A 1 204 4 CD CD . F 2 CD A 1 205 5 CD CD . G 2 CD A 1 206 6 CD CD . H 2 CD A 1 207 7 CD CD . I 2 CD A 1 208 8 CD CD . J 2 CD A 1 209 9 CD CD . K 2 CD A 1 210 10 CD CD . L 3 CL A 1 211 1 CL CL . M 3 CL A 1 212 2 CL CL . N 3 CL A 1 213 3 CL CL . O 3 CL A 1 214 4 CL CL . P 3 CL A 1 215 5 CL CL . Q 3 CL A 1 216 6 CL CL . R 3 CL A 1 217 7 CL CL . S 3 CL A 1 218 8 CL CL . T 3 CL A 1 219 9 CL CL . U 3 CL A 1 220 10 CL CL . V 4 NA A 1 221 1 NA NA . W 5 EDO A 1 222 1 EDO EDO . X 6 HOH A 1 301 189 HOH HOH . X 6 HOH A 2 302 20 HOH HOH . X 6 HOH A 3 303 147 HOH HOH . X 6 HOH A 4 304 144 HOH HOH . X 6 HOH A 5 305 87 HOH HOH . X 6 HOH A 6 306 7 HOH HOH . X 6 HOH A 7 307 63 HOH HOH . X 6 HOH A 8 308 11 HOH HOH . X 6 HOH A 9 309 78 HOH HOH . X 6 HOH A 10 310 174 HOH HOH . X 6 HOH A 11 311 111 HOH HOH . X 6 HOH A 12 312 186 HOH HOH . X 6 HOH A 13 313 16 HOH HOH . X 6 HOH A 14 314 79 HOH HOH . X 6 HOH A 15 315 195 HOH HOH . X 6 HOH A 16 316 46 HOH HOH . X 6 HOH A 17 317 88 HOH HOH . X 6 HOH A 18 318 34 HOH HOH . X 6 HOH A 19 319 24 HOH HOH . X 6 HOH A 20 320 38 HOH HOH . X 6 HOH A 21 321 2 HOH HOH . X 6 HOH A 22 322 176 HOH HOH . X 6 HOH A 23 323 33 HOH HOH . X 6 HOH A 24 324 207 HOH HOH . X 6 HOH A 25 325 145 HOH HOH . X 6 HOH A 26 326 48 HOH HOH . X 6 HOH A 27 327 31 HOH HOH . X 6 HOH A 28 328 39 HOH HOH . X 6 HOH A 29 329 59 HOH HOH . X 6 HOH A 30 330 192 HOH HOH . X 6 HOH A 31 331 10 HOH HOH . X 6 HOH A 32 332 26 HOH HOH . X 6 HOH A 33 333 208 HOH HOH . X 6 HOH A 34 334 21 HOH HOH . X 6 HOH A 35 335 179 HOH HOH . X 6 HOH A 36 336 177 HOH HOH . X 6 HOH A 37 337 206 HOH HOH . X 6 HOH A 38 338 43 HOH HOH . X 6 HOH A 39 339 183 HOH HOH . X 6 HOH A 40 340 209 HOH HOH . X 6 HOH A 41 341 115 HOH HOH . X 6 HOH A 42 342 5 HOH HOH . X 6 HOH A 43 343 36 HOH HOH . X 6 HOH A 44 344 17 HOH HOH . X 6 HOH A 45 345 6 HOH HOH . X 6 HOH A 46 346 125 HOH HOH . X 6 HOH A 47 347 9 HOH HOH . X 6 HOH A 48 348 194 HOH HOH . X 6 HOH A 49 349 44 HOH HOH . X 6 HOH A 50 350 40 HOH HOH . X 6 HOH A 51 351 178 HOH HOH . X 6 HOH A 52 352 14 HOH HOH . X 6 HOH A 53 353 110 HOH HOH . X 6 HOH A 54 354 72 HOH HOH . X 6 HOH A 55 355 47 HOH HOH . X 6 HOH A 56 356 18 HOH HOH . X 6 HOH A 57 357 13 HOH HOH . X 6 HOH A 58 358 28 HOH HOH . X 6 HOH A 59 359 12 HOH HOH . X 6 HOH A 60 360 37 HOH HOH . X 6 HOH A 61 361 100 HOH HOH . X 6 HOH A 62 362 173 HOH HOH . X 6 HOH A 63 363 29 HOH HOH . X 6 HOH A 64 364 193 HOH HOH . X 6 HOH A 65 365 57 HOH HOH . X 6 HOH A 66 366 3 HOH HOH . X 6 HOH A 67 367 23 HOH HOH . X 6 HOH A 68 368 1 HOH HOH . X 6 HOH A 69 369 51 HOH HOH . X 6 HOH A 70 370 49 HOH HOH . X 6 HOH A 71 371 15 HOH HOH . X 6 HOH A 72 372 25 HOH HOH . X 6 HOH A 73 373 127 HOH HOH . X 6 HOH A 74 374 119 HOH HOH . X 6 HOH A 75 375 4 HOH HOH . X 6 HOH A 76 376 8 HOH HOH . X 6 HOH A 77 377 35 HOH HOH . X 6 HOH A 78 378 148 HOH HOH . X 6 HOH A 79 379 90 HOH HOH . X 6 HOH A 80 380 101 HOH HOH . X 6 HOH A 81 381 185 HOH HOH . X 6 HOH A 82 382 102 HOH HOH . X 6 HOH A 83 383 45 HOH HOH . X 6 HOH A 84 384 117 HOH HOH . X 6 HOH A 85 385 19 HOH HOH . X 6 HOH A 86 386 180 HOH HOH . X 6 HOH A 87 387 55 HOH HOH . X 6 HOH A 88 388 133 HOH HOH . X 6 HOH A 89 389 30 HOH HOH . X 6 HOH A 90 390 191 HOH HOH . X 6 HOH A 91 391 50 HOH HOH . X 6 HOH A 92 392 104 HOH HOH . X 6 HOH A 93 393 32 HOH HOH . X 6 HOH A 94 394 74 HOH HOH . X 6 HOH A 95 395 70 HOH HOH . X 6 HOH A 96 396 62 HOH HOH . X 6 HOH A 97 397 42 HOH HOH . X 6 HOH A 98 398 103 HOH HOH . X 6 HOH A 99 399 77 HOH HOH . X 6 HOH A 100 400 85 HOH HOH . X 6 HOH A 101 401 67 HOH HOH . X 6 HOH A 102 402 41 HOH HOH . X 6 HOH A 103 403 53 HOH HOH . X 6 HOH A 104 404 81 HOH HOH . X 6 HOH A 105 405 52 HOH HOH . X 6 HOH A 106 406 116 HOH HOH . X 6 HOH A 107 407 58 HOH HOH . X 6 HOH A 108 408 196 HOH HOH . X 6 HOH A 109 409 66 HOH HOH . X 6 HOH A 110 410 60 HOH HOH . X 6 HOH A 111 411 175 HOH HOH . X 6 HOH A 112 412 68 HOH HOH . X 6 HOH A 113 413 114 HOH HOH . X 6 HOH A 114 414 22 HOH HOH . X 6 HOH A 115 415 75 HOH HOH . X 6 HOH A 116 416 122 HOH HOH . X 6 HOH A 117 417 91 HOH HOH . X 6 HOH A 118 418 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.431 _atom_site.Cartn_y -23.206 _atom_site.Cartn_z 4.809 _atom_site.occupancy 0.15 _atom_site.B_iso_or_equiv 17.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #