data_5MZA # _model_server_result.job_id n6IauyyjNx_UmhleC5oeFA _model_server_result.datetime_utc '2024-11-22 19:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 5MZA # _exptl.entry_id 5MZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MZA _cell.length_a 68.639 _cell.length_b 109.83 _cell.length_c 112.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 211 NAG 3 n C NAG 2 C 2 NAG B 212 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 730 1_555 A SG CYS 456 A CYS 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 62 A CYS 788 1_555 A SG CYS 251 A CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 79 A CYS 805 1_555 A SG CYS 117 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 173 A CYS 899 1_555 A SG CYS 257 A CYS 983 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 285 A CYS 1011 1_555 A SG CYS 449 A CYS 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 298 A CYS 1024 1_555 A SG CYS 318 A CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 315 A CYS 1041 1_555 A SG CYS 488 A CYS 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 322 A CYS 1048 1_555 A SG CYS 486 A CYS 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 21 B CYS 21 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 25 B CYS 25 1_555 B SG CYS 69 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 108 B CYS 108 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 B ND2 ASN 118 B ASN 118 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 156 B ASN 156 1_555 F C1 NAG . B NAG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 B ND2 ASN 175 B ASN 175 1_555 E C1 NAG . B NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 169 n n C1 C6 IHP sing 170 n n C1 O11 IHP sing 171 n n C1 H1 IHP sing 172 n n C2 C3 IHP sing 173 n n C2 O12 IHP sing 174 n n C2 H2 IHP sing 175 n n C3 C4 IHP sing 176 n n C3 O13 IHP sing 177 n n C3 H3 IHP sing 178 n n C4 C5 IHP sing 179 n n C4 O14 IHP sing 180 n n C4 H4 IHP sing 181 n n C5 C6 IHP sing 182 n n C5 O15 IHP sing 183 n n C5 H5 IHP sing 184 n n C6 O16 IHP sing 185 n n C6 H6 IHP sing 186 n n O11 P1 IHP sing 187 n n P1 O21 IHP doub 188 n n P1 O31 IHP sing 189 n n P1 O41 IHP sing 190 n n O31 H31 IHP sing 191 n n O41 H41 IHP sing 192 n n O12 P2 IHP sing 193 n n P2 O22 IHP doub 194 n n P2 O32 IHP sing 195 n n P2 O42 IHP sing 196 n n O32 H32 IHP sing 197 n n O42 H42 IHP sing 198 n n O13 P3 IHP sing 199 n n P3 O23 IHP doub 200 n n P3 O33 IHP sing 201 n n P3 O43 IHP sing 202 n n O33 H33 IHP sing 203 n n O43 H43 IHP sing 204 n n O14 P4 IHP sing 205 n n P4 O24 IHP doub 206 n n P4 O34 IHP sing 207 n n P4 O44 IHP sing 208 n n O34 H34 IHP sing 209 n n O44 H44 IHP sing 210 n n O15 P5 IHP sing 211 n n P5 O25 IHP doub 212 n n P5 O35 IHP sing 213 n n P5 O45 IHP sing 214 n n O35 H35 IHP sing 215 n n O45 H45 IHP sing 216 n n O16 P6 IHP sing 217 n n P6 O26 IHP doub 218 n n P6 O36 IHP sing 219 n n P6 O46 IHP sing 220 n n O36 H36 IHP sing 221 n n O46 H46 IHP sing 222 n n # _atom_sites.entry_id 5MZA _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 3PO A 1 1301 15 3PO 3PO . E 5 NAG B 1 203 221 NAG NAG . F 5 NAG B 1 204 231 NAG NAG . G 6 IHP B 1 205 14 IHP IHP . H 7 HOH A 1 1401 5 HOH HOH . H 7 HOH A 2 1402 1 HOH HOH . H 7 HOH A 3 1403 2 HOH HOH . H 7 HOH A 4 1404 9 HOH HOH . H 7 HOH A 5 1405 6 HOH HOH . H 7 HOH A 6 1406 3 HOH HOH . H 7 HOH A 7 1407 4 HOH HOH . I 7 HOH B 1 301 10 HOH HOH . I 7 HOH B 2 302 12 HOH HOH . I 7 HOH B 3 303 13 HOH HOH . I 7 HOH B 4 304 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . G 6 4.748 3.571 -12.217 1 92.2 ? C1 IHP 205 B 1 HETATM 2 C C2 IHP . . . G 6 4.472 4.632 -11.156 1 91.58 ? C2 IHP 205 B 1 HETATM 3 C C3 IHP . . . G 6 3.433 5.652 -11.58 1 93.45 ? C3 IHP 205 B 1 HETATM 4 C C4 IHP . . . G 6 2.293 4.862 -12.19 1 92.6 ? C4 IHP 205 B 1 HETATM 5 C C5 IHP . . . G 6 2.664 4.273 -13.546 1 94.54 ? C5 IHP 205 B 1 HETATM 6 C C6 IHP . . . G 6 4.114 3.795 -13.588 1 95.68 ? C6 IHP 205 B 1 HETATM 7 O O11 IHP . . . G 6 6.174 3.428 -12.383 1 91.49 ? O11 IHP 205 B 1 HETATM 8 P P1 IHP . . . G 6 7.088 2.289 -11.706 1 88.83 ? P1 IHP 205 B 1 HETATM 9 O O21 IHP . . . G 6 6.299 1.392 -10.813 1 85.34 ? O21 IHP 205 B 1 HETATM 10 O O31 IHP . . . G 6 8.17 3.05 -10.942 1 89.43 ? O31 IHP 205 B 1 HETATM 11 O O41 IHP . . . G 6 7.735 1.545 -12.882 1 90.01 ? O41 IHP 205 B 1 HETATM 12 O O12 IHP . . . G 6 5.685 5.308 -10.76 1 92.22 ? O12 IHP 205 B 1 HETATM 13 P P2 IHP . . . G 6 5.983 5.855 -9.244 1 90.55 ? P2 IHP 205 B 1 HETATM 14 O O22 IHP . . . G 6 7.414 6.3 -9.139 1 91.97 ? O22 IHP 205 B 1 HETATM 15 O O32 IHP . . . G 6 4.987 6.992 -8.988 1 90.85 ? O32 IHP 205 B 1 HETATM 16 O O42 IHP . . . G 6 5.648 4.725 -8.269 1 86.78 ? O42 IHP 205 B 1 HETATM 17 O O13 IHP . . . G 6 3.996 6.551 -12.561 1 98.15 ? O13 IHP 205 B 1 HETATM 18 P P3 IHP . . . G 6 3.395 8.01 -13.039 1 100.78 ? P3 IHP 205 B 1 HETATM 19 O O23 IHP . . . G 6 4.369 8.663 -13.97 1 103.51 ? O23 IHP 205 B 1 HETATM 20 O O33 IHP . . . G 6 2.049 7.757 -13.72 1 101.23 ? O33 IHP 205 B 1 HETATM 21 O O43 IHP . . . G 6 3.155 8.816 -11.753 1 99.05 ? O43 IHP 205 B 1 HETATM 22 O O14 IHP . . . G 6 1.109 5.686 -12.242 1 91.82 ? O14 IHP 205 B 1 HETATM 23 P P4 IHP . . . G 6 0.271 6.032 -10.85 1 87.61 ? P4 IHP 205 B 1 HETATM 24 O O24 IHP . . . G 6 0.768 5.224 -9.678 1 83.27 ? O24 IHP 205 B 1 HETATM 25 O O34 IHP . . . G 6 0.447 7.532 -10.605 1 88.44 ? O34 IHP 205 B 1 HETATM 26 O O44 IHP . . . G 6 -1.199 5.756 -11.176 1 88.47 ? O44 IHP 205 B 1 HETATM 27 O O15 IHP . . . G 6 2.426 5.223 -14.609 1 95.94 ? O15 IHP 205 B 1 HETATM 28 P P5 IHP . . . G 6 1.854 4.826 -16.103 1 98.04 ? P5 IHP 205 B 1 HETATM 29 O O25 IHP . . . G 6 2.22 3.427 -16.5 1 97.27 ? O25 IHP 205 B 1 HETATM 30 O O35 IHP . . . G 6 0.334 5.021 -16.03 1 97.72 ? O35 IHP 205 B 1 HETATM 31 O O45 IHP . . . G 6 2.424 5.866 -17.083 1 100.36 ? O45 IHP 205 B 1 HETATM 32 O O16 IHP . . . G 6 4.933 4.683 -14.38 1 100.33 ? O16 IHP 205 B 1 HETATM 33 P P6 IHP . . . G 6 5.903 4.192 -15.622 1 104.89 ? P6 IHP 205 B 1 HETATM 34 O O26 IHP . . . G 6 5.119 3.929 -16.876 1 107.02 ? O26 IHP 205 B 1 HETATM 35 O O36 IHP . . . G 6 6.939 5.307 -15.826 1 107.07 ? O36 IHP 205 B 1 HETATM 36 O O46 IHP . . . G 6 6.638 2.942 -15.123 1 103.64 ? O46 IHP 205 B 1 HETATM 37 H H1 IHP . . . G 6 4.361 2.628 -11.834 1 90.87 ? H1 IHP 205 B 1 HETATM 38 H H2 IHP . . . G 6 4.094 4.115 -10.276 1 89.63 ? H2 IHP 205 B 1 HETATM 39 H H3 IHP . . . G 6 3.094 6.209 -10.708 1 92.17 ? H3 IHP 205 B 1 HETATM 40 H H4 IHP . . . G 6 2.069 4.032 -11.522 1 90.9 ? H4 IHP 205 B 1 HETATM 41 H H5 IHP . . . G 6 2.029 3.412 -13.743 1 94.25 ? H5 IHP 205 B 1 HETATM 42 H H6 IHP . . . G 6 4.103 2.828 -14.085 1 95.99 ? H6 IHP 205 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #