data_5MZM
#
_model_server_result.job_id            o34OhQVAOebxRJyvi3Nn4g 
_model_server_result.datetime_utc      '2024-12-26 21:04:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mzm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    5MZM 
#
_exptl.entry_id    5MZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.53 
_cell.angle_gamma         90 
_cell.entry_id            5MZM 
_cell.length_a            91.35 
_cell.length_b            125.01 
_cell.length_c            98.053 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L 1 1 
D,E,F,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 E SG CYS 25 E CYS 25 1_555 E SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5MZM 
_atom_sites.fract_transf_matrix[1][1]    0.010947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002635 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GOL A 1 301 1 GOL GOL . 
H 5 SO4 B 1 101 1 SO4 SO4 . 
I 5 SO4 B 1 102 2 SO4 SO4 . 
J 6 HOH A 1 401 116 HOH HOH . 
J 6 HOH A 2 402 104 HOH HOH . 
J 6 HOH A 3 403 86 HOH HOH . 
J 6 HOH A 4 404 185 HOH HOH . 
J 6 HOH A 5 405 119 HOH HOH . 
J 6 HOH A 6 406 88 HOH HOH . 
J 6 HOH A 7 407 70 HOH HOH . 
J 6 HOH A 8 408 52 HOH HOH . 
J 6 HOH A 9 409 48 HOH HOH . 
J 6 HOH A 10 410 132 HOH HOH . 
J 6 HOH A 11 411 165 HOH HOH . 
J 6 HOH A 12 412 136 HOH HOH . 
J 6 HOH A 13 413 18 HOH HOH . 
J 6 HOH A 14 414 4 HOH HOH . 
J 6 HOH A 15 415 28 HOH HOH . 
J 6 HOH A 16 416 76 HOH HOH . 
J 6 HOH A 17 417 1 HOH HOH . 
J 6 HOH A 18 418 50 HOH HOH . 
J 6 HOH A 19 419 55 HOH HOH . 
J 6 HOH A 20 420 34 HOH HOH . 
J 6 HOH A 21 421 16 HOH HOH . 
J 6 HOH A 22 422 128 HOH HOH . 
J 6 HOH A 23 423 143 HOH HOH . 
J 6 HOH A 24 424 121 HOH HOH . 
J 6 HOH A 25 425 33 HOH HOH . 
J 6 HOH A 26 426 157 HOH HOH . 
J 6 HOH A 27 427 147 HOH HOH . 
J 6 HOH A 28 428 101 HOH HOH . 
J 6 HOH A 29 429 10 HOH HOH . 
J 6 HOH A 30 430 57 HOH HOH . 
J 6 HOH A 31 431 14 HOH HOH . 
J 6 HOH A 32 432 71 HOH HOH . 
J 6 HOH A 33 433 39 HOH HOH . 
J 6 HOH A 34 434 114 HOH HOH . 
J 6 HOH A 35 435 31 HOH HOH . 
J 6 HOH A 36 436 15 HOH HOH . 
J 6 HOH A 37 437 7 HOH HOH . 
J 6 HOH A 38 438 102 HOH HOH . 
J 6 HOH A 39 439 105 HOH HOH . 
J 6 HOH A 40 440 36 HOH HOH . 
J 6 HOH A 41 441 45 HOH HOH . 
J 6 HOH A 42 442 146 HOH HOH . 
J 6 HOH A 43 443 162 HOH HOH . 
J 6 HOH A 44 444 176 HOH HOH . 
K 6 HOH B 1 201 38 HOH HOH . 
K 6 HOH B 2 202 123 HOH HOH . 
K 6 HOH B 3 203 66 HOH HOH . 
K 6 HOH B 4 204 51 HOH HOH . 
K 6 HOH B 5 205 19 HOH HOH . 
K 6 HOH B 6 206 138 HOH HOH . 
K 6 HOH B 7 207 80 HOH HOH . 
K 6 HOH B 8 208 142 HOH HOH . 
K 6 HOH B 9 209 89 HOH HOH . 
K 6 HOH B 10 210 81 HOH HOH . 
K 6 HOH B 11 211 40 HOH HOH . 
K 6 HOH B 12 212 37 HOH HOH . 
K 6 HOH B 13 213 97 HOH HOH . 
K 6 HOH B 14 214 122 HOH HOH . 
K 6 HOH B 15 215 103 HOH HOH . 
K 6 HOH B 16 216 118 HOH HOH . 
K 6 HOH B 17 217 20 HOH HOH . 
K 6 HOH B 18 218 139 HOH HOH . 
K 6 HOH B 19 219 127 HOH HOH . 
K 6 HOH B 20 220 186 HOH HOH . 
K 6 HOH B 21 221 113 HOH HOH . 
K 6 HOH B 22 222 133 HOH HOH . 
K 6 HOH B 23 223 135 HOH HOH . 
K 6 HOH B 24 224 184 HOH HOH . 
K 6 HOH B 25 225 9 HOH HOH . 
K 6 HOH B 26 226 26 HOH HOH . 
K 6 HOH B 27 227 23 HOH HOH . 
L 6 HOH C 1 101 174 HOH HOH . 
L 6 HOH C 2 102 110 HOH HOH . 
M 6 HOH D 1 301 72 HOH HOH . 
M 6 HOH D 2 302 94 HOH HOH . 
M 6 HOH D 3 303 168 HOH HOH . 
M 6 HOH D 4 304 30 HOH HOH . 
M 6 HOH D 5 305 41 HOH HOH . 
M 6 HOH D 6 306 35 HOH HOH . 
M 6 HOH D 7 307 96 HOH HOH . 
M 6 HOH D 8 308 140 HOH HOH . 
M 6 HOH D 9 309 11 HOH HOH . 
M 6 HOH D 10 310 144 HOH HOH . 
M 6 HOH D 11 311 141 HOH HOH . 
M 6 HOH D 12 312 13 HOH HOH . 
M 6 HOH D 13 313 95 HOH HOH . 
M 6 HOH D 14 314 137 HOH HOH . 
M 6 HOH D 15 315 172 HOH HOH . 
M 6 HOH D 16 316 29 HOH HOH . 
M 6 HOH D 17 317 12 HOH HOH . 
M 6 HOH D 18 318 21 HOH HOH . 
M 6 HOH D 19 319 58 HOH HOH . 
M 6 HOH D 20 320 2 HOH HOH . 
M 6 HOH D 21 321 22 HOH HOH . 
M 6 HOH D 22 322 5 HOH HOH . 
M 6 HOH D 23 323 77 HOH HOH . 
M 6 HOH D 24 324 27 HOH HOH . 
M 6 HOH D 25 325 43 HOH HOH . 
M 6 HOH D 26 326 155 HOH HOH . 
M 6 HOH D 27 327 111 HOH HOH . 
M 6 HOH D 28 328 187 HOH HOH . 
M 6 HOH D 29 329 150 HOH HOH . 
M 6 HOH D 30 330 109 HOH HOH . 
M 6 HOH D 31 331 134 HOH HOH . 
M 6 HOH D 32 332 159 HOH HOH . 
M 6 HOH D 33 333 173 HOH HOH . 
M 6 HOH D 34 334 188 HOH HOH . 
M 6 HOH D 35 335 125 HOH HOH . 
M 6 HOH D 36 336 124 HOH HOH . 
M 6 HOH D 37 337 170 HOH HOH . 
N 6 HOH E 1 101 64 HOH HOH . 
N 6 HOH E 2 102 180 HOH HOH . 
N 6 HOH E 3 103 90 HOH HOH . 
N 6 HOH E 4 104 65 HOH HOH . 
N 6 HOH E 5 105 92 HOH HOH . 
N 6 HOH E 6 106 17 HOH HOH . 
N 6 HOH E 7 107 63 HOH HOH . 
N 6 HOH E 8 108 24 HOH HOH . 
N 6 HOH E 9 109 126 HOH HOH . 
N 6 HOH E 10 110 106 HOH HOH . 
N 6 HOH E 11 111 74 HOH HOH . 
N 6 HOH E 12 112 152 HOH HOH . 
N 6 HOH E 13 113 75 HOH HOH . 
N 6 HOH E 14 114 83 HOH HOH . 
N 6 HOH E 15 115 175 HOH HOH . 
O 6 HOH F 1 101 3 HOH HOH . 
O 6 HOH F 2 102 87 HOH HOH . 
O 6 HOH F 3 103 8 HOH HOH . 
O 6 HOH F 4 104 32 HOH HOH . 
O 6 HOH F 5 105 145 HOH HOH . 
O 6 HOH F 6 106 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -26.349 -10.422 81.609 1 66.22 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . G 4 -25.679 -11.311 82.475 1 64.85 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . G 4 -26.087 -8.986 82.047 1 68.08 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . G 4 -26.454 -8.827 83.399 1 70.93 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . G 4 -26.896 -8.029 81.18 1 67.36 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . G 4 -27.427 -7 81.984 1 62.32 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#