data_5MZR
#
_model_server_result.job_id            DSKKOlaG0lItfkYti9zNsQ 
_model_server_result.datetime_utc      '2024-11-27 06:12:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mzr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"NA","auth_seq_id":406}' 
#
_entry.id    5MZR 
#
_exptl.entry_id    5MZR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.83 
_cell.angle_gamma         90 
_cell.entry_id            5MZR 
_cell.length_a            182.842 
_cell.length_b            132.989 
_cell.length_c            161.162 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MZR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 R N N 
? 4 W N N 
? 4 EA N N 
? 4 NA N N 
? 4 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? 
metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc3 B O PRO 68 B PRO 68 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? 
metalc ? metalc4 B O ILE 71 B ILE 71 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc5 C O ILE 71 C ILE 71 1_555 EA NA NA . C NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc6 D O ILE 71 D ILE 71 1_555 NA NA NA . D NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc7 E O ILE 71 E ILE 71 1_555 XA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5MZR 
_atom_sites.fract_transf_matrix[1][1]    0.005469 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001246 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PLC A 1 401 402 PLC PLC . 
G 2 PLC A 1 402 403 PLC PLC . 
H 2 PLC A 1 403 404 PLC PLC . 
I 3 CL A 1 404 405 CL CL . 
J 3 CL A 1 405 406 CL CL . 
K 3 CL A 1 406 407 CL CL . 
L 4 NA A 1 407 408 NA NA . 
M 5 ACT A 1 408 410 ACT ACT . 
N 6 LMT A 1 409 411 LMT LMT . 
O 6 LMT A 1 410 412 LMT LMT . 
P 5 ACT A 1 411 401 ACT ACT . 
Q 7 PFL A 1 412 4 PFL PFL . 
R 4 NA B 1 401 409 NA NA . 
S 2 PLC B 1 402 402 PLC PLC . 
T 2 PLC B 1 403 403 PLC PLC . 
U 2 PLC B 1 404 404 PLC PLC . 
V 3 CL B 1 405 405 CL CL . 
W 4 NA B 1 406 406 NA NA . 
X 5 ACT B 1 407 407 ACT ACT . 
Y 6 LMT B 1 408 408 LMT LMT . 
Z 5 ACT C 1 401 401 ACT ACT . 
AA 2 PLC C 1 402 402 PLC PLC . 
BA 2 PLC C 1 403 403 PLC PLC . 
CA 2 PLC C 1 404 404 PLC PLC . 
DA 3 CL C 1 405 405 CL CL . 
EA 4 NA C 1 406 406 NA NA . 
FA 5 ACT C 1 407 407 ACT ACT . 
GA 6 LMT C 1 408 408 LMT LMT . 
HA 7 PFL C 1 409 1 PFL PFL . 
IA 5 ACT D 1 401 401 ACT ACT . 
JA 2 PLC D 1 402 402 PLC PLC . 
KA 2 PLC D 1 403 403 PLC PLC . 
LA 2 PLC D 1 404 404 PLC PLC . 
MA 3 CL D 1 405 405 CL CL . 
NA 4 NA D 1 406 406 NA NA . 
OA 5 ACT D 1 407 407 ACT ACT . 
PA 6 LMT D 1 408 408 LMT LMT . 
QA 5 ACT D 1 409 401 ACT ACT . 
RA 7 PFL D 1 410 2 PFL PFL . 
SA 5 ACT E 1 401 401 ACT ACT . 
TA 2 PLC E 1 402 402 PLC PLC . 
UA 2 PLC E 1 403 403 PLC PLC . 
VA 2 PLC E 1 404 404 PLC PLC . 
WA 3 CL E 1 405 405 CL CL . 
XA 4 NA E 1 406 406 NA NA . 
YA 5 ACT E 1 407 407 ACT ACT . 
ZA 6 LMT E 1 408 408 LMT LMT . 
AB 7 PFL E 1 409 3 PFL PFL . 
BB 8 HOH A 1 501 530 HOH HOH . 
BB 8 HOH A 2 502 556 HOH HOH . 
BB 8 HOH A 3 503 587 HOH HOH . 
BB 8 HOH A 4 504 43 HOH HOH . 
BB 8 HOH A 5 505 570 HOH HOH . 
BB 8 HOH A 6 506 10 HOH HOH . 
BB 8 HOH A 7 507 18 HOH HOH . 
BB 8 HOH A 8 508 569 HOH HOH . 
BB 8 HOH A 9 509 593 HOH HOH . 
BB 8 HOH A 10 510 586 HOH HOH . 
BB 8 HOH A 11 511 609 HOH HOH . 
BB 8 HOH A 12 512 566 HOH HOH . 
BB 8 HOH A 13 513 37 HOH HOH . 
BB 8 HOH A 14 514 544 HOH HOH . 
BB 8 HOH A 15 515 504 HOH HOH . 
BB 8 HOH A 16 516 573 HOH HOH . 
BB 8 HOH A 17 517 552 HOH HOH . 
BB 8 HOH A 18 518 551 HOH HOH . 
BB 8 HOH A 19 519 538 HOH HOH . 
BB 8 HOH A 20 520 522 HOH HOH . 
BB 8 HOH A 21 521 25 HOH HOH . 
BB 8 HOH A 22 522 47 HOH HOH . 
BB 8 HOH A 23 523 574 HOH HOH . 
BB 8 HOH A 24 524 515 HOH HOH . 
BB 8 HOH A 25 525 568 HOH HOH . 
BB 8 HOH A 26 526 579 HOH HOH . 
BB 8 HOH A 27 527 572 HOH HOH . 
BB 8 HOH A 28 528 565 HOH HOH . 
BB 8 HOH A 29 529 545 HOH HOH . 
BB 8 HOH A 30 530 595 HOH HOH . 
BB 8 HOH A 31 531 539 HOH HOH . 
BB 8 HOH A 32 532 571 HOH HOH . 
BB 8 HOH A 33 533 503 HOH HOH . 
BB 8 HOH A 34 534 517 HOH HOH . 
BB 8 HOH A 35 535 567 HOH HOH . 
BB 8 HOH A 36 536 608 HOH HOH . 
BB 8 HOH A 37 537 2 HOH HOH . 
CB 8 HOH B 1 501 531 HOH HOH . 
CB 8 HOH B 2 502 32 HOH HOH . 
CB 8 HOH B 3 503 551 HOH HOH . 
CB 8 HOH B 4 504 513 HOH HOH . 
CB 8 HOH B 5 505 39 HOH HOH . 
CB 8 HOH B 6 506 590 HOH HOH . 
CB 8 HOH B 7 507 20 HOH HOH . 
CB 8 HOH B 8 508 46 HOH HOH . 
CB 8 HOH B 9 509 560 HOH HOH . 
CB 8 HOH B 10 510 528 HOH HOH . 
CB 8 HOH B 11 511 24 HOH HOH . 
CB 8 HOH B 12 512 535 HOH HOH . 
CB 8 HOH B 13 513 26 HOH HOH . 
CB 8 HOH B 14 514 540 HOH HOH . 
CB 8 HOH B 15 515 12 HOH HOH . 
CB 8 HOH B 16 516 19 HOH HOH . 
CB 8 HOH B 17 517 529 HOH HOH . 
CB 8 HOH B 18 518 547 HOH HOH . 
CB 8 HOH B 19 519 22 HOH HOH . 
CB 8 HOH B 20 520 512 HOH HOH . 
CB 8 HOH B 21 521 615 HOH HOH . 
CB 8 HOH B 22 522 530 HOH HOH . 
CB 8 HOH B 23 523 541 HOH HOH . 
CB 8 HOH B 24 524 42 HOH HOH . 
CB 8 HOH B 25 525 578 HOH HOH . 
CB 8 HOH B 26 526 598 HOH HOH . 
CB 8 HOH B 27 527 562 HOH HOH . 
CB 8 HOH B 28 528 578 HOH HOH . 
CB 8 HOH B 29 529 621 HOH HOH . 
CB 8 HOH B 30 530 548 HOH HOH . 
CB 8 HOH B 31 531 41 HOH HOH . 
CB 8 HOH B 32 532 550 HOH HOH . 
CB 8 HOH B 33 533 561 HOH HOH . 
CB 8 HOH B 34 534 579 HOH HOH . 
CB 8 HOH B 35 535 516 HOH HOH . 
CB 8 HOH B 36 536 38 HOH HOH . 
CB 8 HOH B 37 537 559 HOH HOH . 
CB 8 HOH B 38 538 33 HOH HOH . 
CB 8 HOH B 39 539 3 HOH HOH . 
DB 8 HOH C 1 501 564 HOH HOH . 
DB 8 HOH C 2 502 555 HOH HOH . 
DB 8 HOH C 3 503 538 HOH HOH . 
DB 8 HOH C 4 504 13 HOH HOH . 
DB 8 HOH C 5 505 510 HOH HOH . 
DB 8 HOH C 6 506 11 HOH HOH . 
DB 8 HOH C 7 507 44 HOH HOH . 
DB 8 HOH C 8 508 567 HOH HOH . 
DB 8 HOH C 9 509 570 HOH HOH . 
DB 8 HOH C 10 510 550 HOH HOH . 
DB 8 HOH C 11 511 547 HOH HOH . 
DB 8 HOH C 12 512 592 HOH HOH . 
DB 8 HOH C 13 513 584 HOH HOH . 
DB 8 HOH C 14 514 28 HOH HOH . 
DB 8 HOH C 15 515 521 HOH HOH . 
DB 8 HOH C 16 516 549 HOH HOH . 
DB 8 HOH C 17 517 553 HOH HOH . 
DB 8 HOH C 18 518 21 HOH HOH . 
DB 8 HOH C 19 519 509 HOH HOH . 
DB 8 HOH C 20 520 546 HOH HOH . 
DB 8 HOH C 21 521 580 HOH HOH . 
DB 8 HOH C 22 522 34 HOH HOH . 
DB 8 HOH C 23 523 7 HOH HOH . 
DB 8 HOH C 24 524 538 HOH HOH . 
DB 8 HOH C 25 525 4 HOH HOH . 
EB 8 HOH D 1 501 554 HOH HOH . 
EB 8 HOH D 2 502 23 HOH HOH . 
EB 8 HOH D 3 503 512 HOH HOH . 
EB 8 HOH D 4 504 8 HOH HOH . 
EB 8 HOH D 5 505 553 HOH HOH . 
EB 8 HOH D 6 506 573 HOH HOH . 
EB 8 HOH D 7 507 45 HOH HOH . 
EB 8 HOH D 8 508 35 HOH HOH . 
EB 8 HOH D 9 509 30 HOH HOH . 
EB 8 HOH D 10 510 568 HOH HOH . 
EB 8 HOH D 11 511 526 HOH HOH . 
EB 8 HOH D 12 512 575 HOH HOH . 
EB 8 HOH D 13 513 577 HOH HOH . 
EB 8 HOH D 14 514 540 HOH HOH . 
EB 8 HOH D 15 515 539 HOH HOH . 
EB 8 HOH D 16 516 582 HOH HOH . 
EB 8 HOH D 17 517 525 HOH HOH . 
EB 8 HOH D 18 518 548 HOH HOH . 
EB 8 HOH D 19 519 31 HOH HOH . 
EB 8 HOH D 20 520 519 HOH HOH . 
EB 8 HOH D 21 521 29 HOH HOH . 
EB 8 HOH D 22 522 559 HOH HOH . 
EB 8 HOH D 23 523 542 HOH HOH . 
EB 8 HOH D 24 524 585 HOH HOH . 
EB 8 HOH D 25 525 560 HOH HOH . 
EB 8 HOH D 26 526 543 HOH HOH . 
EB 8 HOH D 27 527 581 HOH HOH . 
EB 8 HOH D 28 528 5 HOH HOH . 
FB 8 HOH E 1 501 558 HOH HOH . 
FB 8 HOH E 2 502 553 HOH HOH . 
FB 8 HOH E 3 503 513 HOH HOH . 
FB 8 HOH E 4 504 522 HOH HOH . 
FB 8 HOH E 5 505 573 HOH HOH . 
FB 8 HOH E 6 506 524 HOH HOH . 
FB 8 HOH E 7 507 555 HOH HOH . 
FB 8 HOH E 8 508 40 HOH HOH . 
FB 8 HOH E 9 509 9 HOH HOH . 
FB 8 HOH E 10 510 16 HOH HOH . 
FB 8 HOH E 11 511 528 HOH HOH . 
FB 8 HOH E 12 512 526 HOH HOH . 
FB 8 HOH E 13 513 15 HOH HOH . 
FB 8 HOH E 14 514 578 HOH HOH . 
FB 8 HOH E 15 515 562 HOH HOH . 
FB 8 HOH E 16 516 17 HOH HOH . 
FB 8 HOH E 17 517 580 HOH HOH . 
FB 8 HOH E 18 518 602 HOH HOH . 
FB 8 HOH E 19 519 541 HOH HOH . 
FB 8 HOH E 20 520 566 HOH HOH . 
FB 8 HOH E 21 521 27 HOH HOH . 
FB 8 HOH E 22 522 571 HOH HOH . 
FB 8 HOH E 23 523 530 HOH HOH . 
FB 8 HOH E 24 524 557 HOH HOH . 
FB 8 HOH E 25 525 570 HOH HOH . 
FB 8 HOH E 26 526 557 HOH HOH . 
FB 8 HOH E 27 527 538 HOH HOH . 
FB 8 HOH E 28 528 36 HOH HOH . 
FB 8 HOH E 29 529 577 HOH HOH . 
FB 8 HOH E 30 530 6 HOH HOH . 
FB 8 HOH E 31 531 1 HOH HOH . 
FB 8 HOH E 32 532 560 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         NA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               42.837 
_atom_site.Cartn_y               -36.909 
_atom_site.Cartn_z               -10.358 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        95.13 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           406 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#