data_5MZV # _model_server_result.job_id qBEV4ioMR2IrXHHNf6nglw _model_server_result.datetime_utc '2025-03-06 01:11:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 5MZV # _exptl.entry_id 5MZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.24 _cell.angle_gamma 90 _cell.entry_id 5MZV _cell.length_a 67.219 _cell.length_b 112.19 _cell.length_c 109.87 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 L N N ? 8 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 5 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 5 7 6 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 400 NAG 5 n E NAG 2 E 2 NAG A 401 NAG 5 n E BMA 3 E 3 BMA A 402 BMA 5 n E MAN 4 E 4 MAN A 403 MAN 5 n E MAN 5 E 5 MAN A 407 MAN 5 n E MAN 6 E 6 MAN A 404 MAN 5 n E MAN 7 E 7 MAN A 408 MAN 6 n F NAG 1 F 1 NAG C 410 NAG 6 n F NAG 2 F 2 NAG C 411 NAG 7 n G NAG 1 G 1 NAG C 420 NAG 7 n G NAG 2 G 2 NAG C 421 NAG 7 n G BMA 3 G 3 BMA C 422 BMA 6 n H NAG 1 H 1 NAG C 430 NAG 6 n H NAG 2 H 2 NAG C 431 NAG 6 n I NAG 1 I 1 NAG C 440 NAG 6 n I NAG 2 I 2 NAG C 441 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 131 A CYS 131 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 170 A CYS 170 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 199 A CYS 199 1_555 B SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 300 A CYS 300 1_555 A SG CYS 327 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 77 B CYS 77 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 30 C CYS 30 1_555 C SG CYS 115 C CYS 115 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 52 C CYS 52 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 59 C CYS 59 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 C SG CYS 133 C CYS 133 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 253 C CYS 253 1_555 C SG CYS 296 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 D SG CYS 44 D CYS 22 1_555 D SG CYS 118 D CYS 96 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 D SG CYS 44 D CYS 22 1_555 D SG CYS 118 D CYS 96 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 222 A ASN 222 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 C ND2 ASN 47 C ASN 47 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 C ND2 ASN 81 C ASN 81 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 141 C ASN 141 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 C ND2 ASN 180 C ASN 180 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 C ND2 ASN 262 C ASN 262 1_555 N C1 NAG . C NAG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 C ND2 ASN 273 C ASN 273 1_555 O C1 NAG . C NAG 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 E O2 MAN . E MAN 4 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 E O3 MAN . E MAN 6 1_555 E C1 MAN . E MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale16 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale17 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OD1 ASP 84 A ASP 84 1_555 K NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc2 K NA NA . A NA 402 2_546 C OE2 GLU 168 C GLU 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MZV _atom_sites.fract_transf_matrix[1][1] 0.014877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 8 CL A 1 401 350 CL CL . K 9 NA A 1 402 351 NA NA . L 8 CL C 1 401 350 CL CL . M 8 CL C 1 402 351 CL CL . N 10 NAG C 1 412 460 NAG NAG . O 10 NAG C 1 413 470 NAG NAG . P 11 HOH A 1 501 371 HOH HOH . P 11 HOH A 2 502 352 HOH HOH . P 11 HOH A 3 503 356 HOH HOH . P 11 HOH A 4 504 378 HOH HOH . P 11 HOH A 5 505 374 HOH HOH . P 11 HOH A 6 506 156 HOH HOH . P 11 HOH A 7 507 363 HOH HOH . P 11 HOH A 8 508 377 HOH HOH . P 11 HOH A 9 509 373 HOH HOH . P 11 HOH A 10 510 359 HOH HOH . P 11 HOH A 11 511 361 HOH HOH . P 11 HOH A 12 512 362 HOH HOH . P 11 HOH A 13 513 355 HOH HOH . P 11 HOH A 14 514 357 HOH HOH . P 11 HOH A 15 515 366 HOH HOH . P 11 HOH A 16 516 370 HOH HOH . P 11 HOH A 17 517 354 HOH HOH . P 11 HOH A 18 518 360 HOH HOH . P 11 HOH A 19 519 375 HOH HOH . P 11 HOH A 20 520 364 HOH HOH . P 11 HOH A 21 521 353 HOH HOH . P 11 HOH A 22 522 365 HOH HOH . P 11 HOH A 23 523 376 HOH HOH . P 11 HOH A 24 524 367 HOH HOH . P 11 HOH A 25 525 358 HOH HOH . P 11 HOH A 26 526 372 HOH HOH . P 11 HOH A 27 527 368 HOH HOH . P 11 HOH A 28 528 369 HOH HOH . P 11 HOH A 29 529 382 HOH HOH . Q 11 HOH B 1 201 201 HOH HOH . Q 11 HOH B 2 202 200 HOH HOH . R 11 HOH C 1 501 365 HOH HOH . R 11 HOH C 2 502 358 HOH HOH . R 11 HOH C 3 503 369 HOH HOH . R 11 HOH C 4 504 377 HOH HOH . R 11 HOH C 5 505 378 HOH HOH . R 11 HOH C 6 506 370 HOH HOH . R 11 HOH C 7 507 379 HOH HOH . R 11 HOH C 8 508 383 HOH HOH . R 11 HOH C 9 509 373 HOH HOH . R 11 HOH C 10 510 375 HOH HOH . R 11 HOH C 11 511 385 HOH HOH . R 11 HOH C 12 512 368 HOH HOH . R 11 HOH C 13 513 363 HOH HOH . R 11 HOH C 14 514 388 HOH HOH . R 11 HOH C 15 515 360 HOH HOH . R 11 HOH C 16 516 357 HOH HOH . R 11 HOH C 17 517 361 HOH HOH . R 11 HOH C 18 518 353 HOH HOH . R 11 HOH C 19 519 367 HOH HOH . R 11 HOH C 20 520 376 HOH HOH . R 11 HOH C 21 521 389 HOH HOH . R 11 HOH C 22 522 354 HOH HOH . R 11 HOH C 23 523 355 HOH HOH . R 11 HOH C 24 524 374 HOH HOH . R 11 HOH C 25 525 362 HOH HOH . R 11 HOH C 26 526 359 HOH HOH . R 11 HOH C 27 527 384 HOH HOH . R 11 HOH C 28 528 381 HOH HOH . R 11 HOH C 29 529 387 HOH HOH . R 11 HOH C 30 530 380 HOH HOH . R 11 HOH C 31 531 372 HOH HOH . R 11 HOH C 32 532 356 HOH HOH . R 11 HOH C 33 533 352 HOH HOH . R 11 HOH C 34 534 364 HOH HOH . R 11 HOH C 35 535 366 HOH HOH . R 11 HOH C 36 536 386 HOH HOH . R 11 HOH C 37 537 371 HOH HOH . R 11 HOH C 38 538 390 HOH HOH . S 11 HOH D 1 201 155 HOH HOH . S 11 HOH D 2 202 154 HOH HOH . S 11 HOH D 3 203 150 HOH HOH . S 11 HOH D 4 204 153 HOH HOH . S 11 HOH D 5 205 151 HOH HOH . S 11 HOH D 6 206 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x -63.788 _atom_site.Cartn_y 8.012 _atom_site.Cartn_z 42.159 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #