data_5N0D
#
_model_server_result.job_id            iHPN2stoCzTKIXFJkZm-DQ 
_model_server_result.datetime_utc      '2024-11-22 19:15:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5N0D 
#
_exptl.entry_id    5N0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.29 
_cell.angle_gamma         90 
_cell.entry_id            5N0D 
_cell.length_a            42.3 
_cell.length_b            41.33 
_cell.length_c            71.81 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 96 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc2 A NE2 HIS 98 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc3 A ND1 HIS 121 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N2 8F2 . A 8F2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 182 n n 
C1 C2 GOL sing 183 n n 
C1 H11 GOL sing 184 n n 
C1 H12 GOL sing 185 n n 
O1 HO1 GOL sing 186 n n 
C2 O2 GOL sing 187 n n 
C2 C3 GOL sing 188 n n 
C2 H2 GOL sing 189 n n 
O2 HO2 GOL sing 190 n n 
C3 O3 GOL sing 191 n n 
C3 H31 GOL sing 192 n n 
C3 H32 GOL sing 193 n n 
O3 HO3 GOL sing 194 n n 
#
_atom_sites.entry_id                     5N0D 
_atom_sites.fract_transf_matrix[1][1]    0.023641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006022 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01437 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 8F2 A 1 302 263 8F2 EB2 . 
D 4 GOL A 1 303 264 GOL GOL . 
E 5 HOH A 1 401 538 HOH HOH . 
E 5 HOH A 2 402 324 HOH HOH . 
E 5 HOH A 3 403 390 HOH HOH . 
E 5 HOH A 4 404 404 HOH HOH . 
E 5 HOH A 5 405 391 HOH HOH . 
E 5 HOH A 6 406 523 HOH HOH . 
E 5 HOH A 7 407 504 HOH HOH . 
E 5 HOH A 8 408 528 HOH HOH . 
E 5 HOH A 9 409 321 HOH HOH . 
E 5 HOH A 10 410 329 HOH HOH . 
E 5 HOH A 11 411 435 HOH HOH . 
E 5 HOH A 12 412 411 HOH HOH . 
E 5 HOH A 13 413 330 HOH HOH . 
E 5 HOH A 14 414 494 HOH HOH . 
E 5 HOH A 15 415 425 HOH HOH . 
E 5 HOH A 16 416 481 HOH HOH . 
E 5 HOH A 17 417 306 HOH HOH . 
E 5 HOH A 18 418 483 HOH HOH . 
E 5 HOH A 19 419 421 HOH HOH . 
E 5 HOH A 20 420 505 HOH HOH . 
E 5 HOH A 21 421 503 HOH HOH . 
E 5 HOH A 22 422 526 HOH HOH . 
E 5 HOH A 23 423 353 HOH HOH . 
E 5 HOH A 24 424 301 HOH HOH . 
E 5 HOH A 25 425 395 HOH HOH . 
E 5 HOH A 26 426 348 HOH HOH . 
E 5 HOH A 27 427 408 HOH HOH . 
E 5 HOH A 28 428 336 HOH HOH . 
E 5 HOH A 29 429 514 HOH HOH . 
E 5 HOH A 30 430 489 HOH HOH . 
E 5 HOH A 31 431 342 HOH HOH . 
E 5 HOH A 32 432 424 HOH HOH . 
E 5 HOH A 33 433 527 HOH HOH . 
E 5 HOH A 34 434 452 HOH HOH . 
E 5 HOH A 35 435 328 HOH HOH . 
E 5 HOH A 36 436 331 HOH HOH . 
E 5 HOH A 37 437 323 HOH HOH . 
E 5 HOH A 38 438 410 HOH HOH . 
E 5 HOH A 39 439 454 HOH HOH . 
E 5 HOH A 40 440 486 HOH HOH . 
E 5 HOH A 41 441 307 HOH HOH . 
E 5 HOH A 42 442 368 HOH HOH . 
E 5 HOH A 43 443 318 HOH HOH . 
E 5 HOH A 44 444 322 HOH HOH . 
E 5 HOH A 45 445 357 HOH HOH . 
E 5 HOH A 46 446 340 HOH HOH . 
E 5 HOH A 47 447 317 HOH HOH . 
E 5 HOH A 48 448 461 HOH HOH . 
E 5 HOH A 49 449 423 HOH HOH . 
E 5 HOH A 50 450 512 HOH HOH . 
E 5 HOH A 51 451 333 HOH HOH . 
E 5 HOH A 52 452 320 HOH HOH . 
E 5 HOH A 53 453 429 HOH HOH . 
E 5 HOH A 54 454 367 HOH HOH . 
E 5 HOH A 55 455 304 HOH HOH . 
E 5 HOH A 56 456 406 HOH HOH . 
E 5 HOH A 57 457 377 HOH HOH . 
E 5 HOH A 58 458 466 HOH HOH . 
E 5 HOH A 59 459 441 HOH HOH . 
E 5 HOH A 60 460 524 HOH HOH . 
E 5 HOH A 61 461 356 HOH HOH . 
E 5 HOH A 62 462 366 HOH HOH . 
E 5 HOH A 63 463 360 HOH HOH . 
E 5 HOH A 64 464 470 HOH HOH . 
E 5 HOH A 65 465 371 HOH HOH . 
E 5 HOH A 66 466 303 HOH HOH . 
E 5 HOH A 67 467 498 HOH HOH . 
E 5 HOH A 68 468 426 HOH HOH . 
E 5 HOH A 69 469 507 HOH HOH . 
E 5 HOH A 70 470 430 HOH HOH . 
E 5 HOH A 71 471 314 HOH HOH . 
E 5 HOH A 72 472 413 HOH HOH . 
E 5 HOH A 73 473 354 HOH HOH . 
E 5 HOH A 74 474 337 HOH HOH . 
E 5 HOH A 75 475 326 HOH HOH . 
E 5 HOH A 76 476 499 HOH HOH . 
E 5 HOH A 77 477 407 HOH HOH . 
E 5 HOH A 78 478 308 HOH HOH . 
E 5 HOH A 79 479 334 HOH HOH . 
E 5 HOH A 80 480 375 HOH HOH . 
E 5 HOH A 81 481 392 HOH HOH . 
E 5 HOH A 82 482 478 HOH HOH . 
E 5 HOH A 83 483 305 HOH HOH . 
E 5 HOH A 84 484 373 HOH HOH . 
E 5 HOH A 85 485 388 HOH HOH . 
E 5 HOH A 86 486 347 HOH HOH . 
E 5 HOH A 87 487 349 HOH HOH . 
E 5 HOH A 88 488 370 HOH HOH . 
E 5 HOH A 89 489 315 HOH HOH . 
E 5 HOH A 90 490 467 HOH HOH . 
E 5 HOH A 91 491 302 HOH HOH . 
E 5 HOH A 92 492 339 HOH HOH . 
E 5 HOH A 93 493 343 HOH HOH . 
E 5 HOH A 94 494 405 HOH HOH . 
E 5 HOH A 95 495 309 HOH HOH . 
E 5 HOH A 96 496 439 HOH HOH . 
E 5 HOH A 97 497 345 HOH HOH . 
E 5 HOH A 98 498 311 HOH HOH . 
E 5 HOH A 99 499 335 HOH HOH . 
E 5 HOH A 100 500 472 HOH HOH . 
E 5 HOH A 101 501 434 HOH HOH . 
E 5 HOH A 102 502 444 HOH HOH . 
E 5 HOH A 103 503 455 HOH HOH . 
E 5 HOH A 104 504 364 HOH HOH . 
E 5 HOH A 105 505 428 HOH HOH . 
E 5 HOH A 106 506 325 HOH HOH . 
E 5 HOH A 107 507 399 HOH HOH . 
E 5 HOH A 108 508 402 HOH HOH . 
E 5 HOH A 109 509 378 HOH HOH . 
E 5 HOH A 110 510 387 HOH HOH . 
E 5 HOH A 111 511 436 HOH HOH . 
E 5 HOH A 112 512 350 HOH HOH . 
E 5 HOH A 113 513 465 HOH HOH . 
E 5 HOH A 114 514 385 HOH HOH . 
E 5 HOH A 115 515 515 HOH HOH . 
E 5 HOH A 116 516 383 HOH HOH . 
E 5 HOH A 117 517 456 HOH HOH . 
E 5 HOH A 118 518 362 HOH HOH . 
E 5 HOH A 119 519 376 HOH HOH . 
E 5 HOH A 120 520 365 HOH HOH . 
E 5 HOH A 121 521 327 HOH HOH . 
E 5 HOH A 122 522 346 HOH HOH . 
E 5 HOH A 123 523 525 HOH HOH . 
E 5 HOH A 124 524 427 HOH HOH . 
E 5 HOH A 125 525 412 HOH HOH . 
E 5 HOH A 126 526 374 HOH HOH . 
E 5 HOH A 127 527 511 HOH HOH . 
E 5 HOH A 128 528 310 HOH HOH . 
E 5 HOH A 129 529 363 HOH HOH . 
E 5 HOH A 130 530 497 HOH HOH . 
E 5 HOH A 131 531 419 HOH HOH . 
E 5 HOH A 132 532 379 HOH HOH . 
E 5 HOH A 133 533 531 HOH HOH . 
E 5 HOH A 134 534 458 HOH HOH . 
E 5 HOH A 135 535 416 HOH HOH . 
E 5 HOH A 136 536 332 HOH HOH . 
E 5 HOH A 137 537 450 HOH HOH . 
E 5 HOH A 138 538 313 HOH HOH . 
E 5 HOH A 139 539 496 HOH HOH . 
E 5 HOH A 140 540 352 HOH HOH . 
E 5 HOH A 141 541 358 HOH HOH . 
E 5 HOH A 142 542 475 HOH HOH . 
E 5 HOH A 143 543 397 HOH HOH . 
E 5 HOH A 144 544 361 HOH HOH . 
E 5 HOH A 145 545 468 HOH HOH . 
E 5 HOH A 146 546 446 HOH HOH . 
E 5 HOH A 147 547 398 HOH HOH . 
E 5 HOH A 148 548 463 HOH HOH . 
E 5 HOH A 149 549 517 HOH HOH . 
E 5 HOH A 150 550 471 HOH HOH . 
E 5 HOH A 151 551 338 HOH HOH . 
E 5 HOH A 152 552 372 HOH HOH . 
E 5 HOH A 153 553 453 HOH HOH . 
E 5 HOH A 154 554 510 HOH HOH . 
E 5 HOH A 155 555 520 HOH HOH . 
E 5 HOH A 156 556 473 HOH HOH . 
E 5 HOH A 157 557 381 HOH HOH . 
E 5 HOH A 158 558 369 HOH HOH . 
E 5 HOH A 159 559 341 HOH HOH . 
E 5 HOH A 160 560 447 HOH HOH . 
E 5 HOH A 161 561 355 HOH HOH . 
E 5 HOH A 162 562 487 HOH HOH . 
E 5 HOH A 163 563 344 HOH HOH . 
E 5 HOH A 164 564 319 HOH HOH . 
E 5 HOH A 165 565 500 HOH HOH . 
E 5 HOH A 166 566 491 HOH HOH . 
E 5 HOH A 167 567 479 HOH HOH . 
E 5 HOH A 168 568 474 HOH HOH . 
E 5 HOH A 169 569 393 HOH HOH . 
E 5 HOH A 170 570 418 HOH HOH . 
E 5 HOH A 171 571 438 HOH HOH . 
E 5 HOH A 172 572 509 HOH HOH . 
E 5 HOH A 173 573 480 HOH HOH . 
E 5 HOH A 174 574 351 HOH HOH . 
E 5 HOH A 175 575 312 HOH HOH . 
E 5 HOH A 176 576 432 HOH HOH . 
E 5 HOH A 177 577 403 HOH HOH . 
E 5 HOH A 178 578 495 HOH HOH . 
E 5 HOH A 179 579 389 HOH HOH . 
E 5 HOH A 180 580 485 HOH HOH . 
E 5 HOH A 181 581 459 HOH HOH . 
E 5 HOH A 182 582 316 HOH HOH . 
E 5 HOH A 183 583 414 HOH HOH . 
E 5 HOH A 184 584 417 HOH HOH . 
E 5 HOH A 185 585 451 HOH HOH . 
E 5 HOH A 186 586 440 HOH HOH . 
E 5 HOH A 187 587 400 HOH HOH . 
E 5 HOH A 188 588 443 HOH HOH . 
E 5 HOH A 189 589 359 HOH HOH . 
E 5 HOH A 190 590 535 HOH HOH . 
E 5 HOH A 191 591 476 HOH HOH . 
E 5 HOH A 192 592 522 HOH HOH . 
E 5 HOH A 193 593 492 HOH HOH . 
E 5 HOH A 194 594 420 HOH HOH . 
E 5 HOH A 195 595 518 HOH HOH . 
E 5 HOH A 196 596 493 HOH HOH . 
E 5 HOH A 197 597 380 HOH HOH . 
E 5 HOH A 198 598 431 HOH HOH . 
E 5 HOH A 199 599 415 HOH HOH . 
E 5 HOH A 200 600 460 HOH HOH . 
E 5 HOH A 201 601 401 HOH HOH . 
E 5 HOH A 202 602 469 HOH HOH . 
E 5 HOH A 203 603 530 HOH HOH . 
E 5 HOH A 204 604 540 HOH HOH . 
E 5 HOH A 205 605 508 HOH HOH . 
E 5 HOH A 206 606 445 HOH HOH . 
E 5 HOH A 207 607 394 HOH HOH . 
E 5 HOH A 208 608 382 HOH HOH . 
E 5 HOH A 209 609 464 HOH HOH . 
E 5 HOH A 210 610 502 HOH HOH . 
E 5 HOH A 211 611 532 HOH HOH . 
E 5 HOH A 212 612 513 HOH HOH . 
E 5 HOH A 213 613 462 HOH HOH . 
E 5 HOH A 214 614 396 HOH HOH . 
E 5 HOH A 215 615 384 HOH HOH . 
E 5 HOH A 216 616 536 HOH HOH . 
E 5 HOH A 217 617 448 HOH HOH . 
E 5 HOH A 218 618 442 HOH HOH . 
E 5 HOH A 219 619 437 HOH HOH . 
E 5 HOH A 220 620 501 HOH HOH . 
E 5 HOH A 221 621 516 HOH HOH . 
E 5 HOH A 222 622 534 HOH HOH . 
E 5 HOH A 223 623 490 HOH HOH . 
E 5 HOH A 224 624 477 HOH HOH . 
E 5 HOH A 225 625 506 HOH HOH . 
E 5 HOH A 226 626 457 HOH HOH . 
E 5 HOH A 227 627 521 HOH HOH . 
E 5 HOH A 228 628 488 HOH HOH . 
E 5 HOH A 229 629 539 HOH HOH . 
E 5 HOH A 230 630 409 HOH HOH . 
E 5 HOH A 231 631 386 HOH HOH . 
E 5 HOH A 232 632 433 HOH HOH . 
E 5 HOH A 233 633 449 HOH HOH . 
E 5 HOH A 234 634 529 HOH HOH . 
E 5 HOH A 235 635 533 HOH HOH . 
E 5 HOH A 236 636 422 HOH HOH . 
E 5 HOH A 237 637 519 HOH HOH . 
E 5 HOH A 238 638 537 HOH HOH . 
E 5 HOH A 239 639 482 HOH HOH . 
E 5 HOH A 240 640 484 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 10.017 -1.984 14.345 1 30.28 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 9.958 -3.027 13.146 1 34.58 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 10.869 -0.953 13.99 1 29.91 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 10.209 0.227 13.968 1 28.75 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 11.937 -0.937 14.892 1 30.17 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 11.472 -0.302 16.291 1 30.13 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#