data_5N0M # _model_server_result.job_id 5WmMDZCU_QNBcR651hfp_A _model_server_result.datetime_utc '2025-03-31 00:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 5N0M # _exptl.entry_id 5N0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.83 _cell.angle_gamma 90 _cell.entry_id 5N0M _cell.length_a 147.91 _cell.length_b 61.3 _cell.length_c 115.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 652 A CYS 645 1_555 I C2 8HT . A 8HT 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 ? metalc ? metalc1 A OD1 ASN 160 A ASN 153 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A OD1 ASP 162 A ASP 155 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A OD2 ASP 162 A ASP 155 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A OD2 ASP 164 A ASP 157 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc5 A OD2 ASP 164 A ASP 157 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc6 A OD2 ASP 172 A ASP 165 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 A O ASP 172 A ASP 165 1_555 H CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 A OD1 ASP 175 A ASP 168 1_555 H CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A O GLU 177 A GLU 170 1_555 H CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 A OD1 ASP 183 A ASP 176 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc11 A OD2 ASP 186 A ASP 179 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc12 A OD1 ASP 186 A ASP 179 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc13 A OD2 ASP 186 A ASP 179 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc14 A OE1 GLN 356 A GLN 349 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc15 A OE1 GLU 358 A GLU 351 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc16 A OE1 GLU 360 A GLU 353 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc17 A OD1 ASP 376 A ASP 369 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc18 A O SER 377 A SER 370 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc19 A OD1 ASN 380 A ASN 373 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc20 A OD1 ASP 395 A ASP 388 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc21 A O PHE 414 A PHE 407 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc22 A O LEU 417 A LEU 410 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc23 A OE1 GLU 418 A GLU 411 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc24 D CA CA . A CA 703 1_555 J O HOH . A HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc25 D CA CA . A CA 703 1_555 J O HOH . A HOH 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc26 E CA CA . A CA 704 1_555 J O HOH . A HOH 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc27 E CA CA . A CA 704 1_555 J O HOH . A HOH 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc28 G CA CA . A CA 706 1_555 J O HOH . A HOH 879 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc29 H CA CA . A CA 707 1_555 J O HOH . A HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc30 H CA CA . A CA 707 1_555 J O HOH . A HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc31 H CA CA . A CA 707 1_555 J O HOH . A HOH 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N0M _atom_sites.fract_transf_matrix[1][1] 0.006761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 905 SO4 SO4 . C 2 SO4 A 1 702 907 SO4 SO4 . D 3 CA A 1 703 900 CA CA . E 3 CA A 1 704 901 CA CA . F 3 CA A 1 705 902 CA CA . G 3 CA A 1 706 903 CA CA . H 3 CA A 1 707 904 CA CA . I 4 8HT A 1 708 1 8HT UNL . J 5 HOH A 1 801 707 HOH HOH . J 5 HOH A 2 802 737 HOH HOH . J 5 HOH A 3 803 799 HOH HOH . J 5 HOH A 4 804 711 HOH HOH . J 5 HOH A 5 805 796 HOH HOH . J 5 HOH A 6 806 714 HOH HOH . J 5 HOH A 7 807 771 HOH HOH . J 5 HOH A 8 808 731 HOH HOH . J 5 HOH A 9 809 702 HOH HOH . J 5 HOH A 10 810 801 HOH HOH . J 5 HOH A 11 811 836 HOH HOH . J 5 HOH A 12 812 760 HOH HOH . J 5 HOH A 13 813 727 HOH HOH . J 5 HOH A 14 814 680 HOH HOH . J 5 HOH A 15 815 723 HOH HOH . J 5 HOH A 16 816 674 HOH HOH . J 5 HOH A 17 817 832 HOH HOH . J 5 HOH A 18 818 794 HOH HOH . J 5 HOH A 19 819 689 HOH HOH . J 5 HOH A 20 820 700 HOH HOH . J 5 HOH A 21 821 792 HOH HOH . J 5 HOH A 22 822 807 HOH HOH . J 5 HOH A 23 823 770 HOH HOH . J 5 HOH A 24 824 718 HOH HOH . J 5 HOH A 25 825 777 HOH HOH . J 5 HOH A 26 826 747 HOH HOH . J 5 HOH A 27 827 780 HOH HOH . J 5 HOH A 28 828 667 HOH HOH . J 5 HOH A 29 829 748 HOH HOH . J 5 HOH A 30 830 732 HOH HOH . J 5 HOH A 31 831 739 HOH HOH . J 5 HOH A 32 832 672 HOH HOH . J 5 HOH A 33 833 705 HOH HOH . J 5 HOH A 34 834 694 HOH HOH . J 5 HOH A 35 835 720 HOH HOH . J 5 HOH A 36 836 819 HOH HOH . J 5 HOH A 37 837 685 HOH HOH . J 5 HOH A 38 838 769 HOH HOH . J 5 HOH A 39 839 791 HOH HOH . J 5 HOH A 40 840 665 HOH HOH . J 5 HOH A 41 841 757 HOH HOH . J 5 HOH A 42 842 725 HOH HOH . J 5 HOH A 43 843 691 HOH HOH . J 5 HOH A 44 844 736 HOH HOH . J 5 HOH A 45 845 682 HOH HOH . J 5 HOH A 46 846 788 HOH HOH . J 5 HOH A 47 847 687 HOH HOH . J 5 HOH A 48 848 724 HOH HOH . J 5 HOH A 49 849 666 HOH HOH . J 5 HOH A 50 850 778 HOH HOH . J 5 HOH A 51 851 735 HOH HOH . J 5 HOH A 52 852 670 HOH HOH . J 5 HOH A 53 853 664 HOH HOH . J 5 HOH A 54 854 763 HOH HOH . J 5 HOH A 55 855 743 HOH HOH . J 5 HOH A 56 856 810 HOH HOH . J 5 HOH A 57 857 697 HOH HOH . J 5 HOH A 58 858 673 HOH HOH . J 5 HOH A 59 859 833 HOH HOH . J 5 HOH A 60 860 750 HOH HOH . J 5 HOH A 61 861 726 HOH HOH . J 5 HOH A 62 862 703 HOH HOH . J 5 HOH A 63 863 741 HOH HOH . J 5 HOH A 64 864 692 HOH HOH . J 5 HOH A 65 865 676 HOH HOH . J 5 HOH A 66 866 779 HOH HOH . J 5 HOH A 67 867 708 HOH HOH . J 5 HOH A 68 868 772 HOH HOH . J 5 HOH A 69 869 761 HOH HOH . J 5 HOH A 70 870 719 HOH HOH . J 5 HOH A 71 871 756 HOH HOH . J 5 HOH A 72 872 678 HOH HOH . J 5 HOH A 73 873 699 HOH HOH . J 5 HOH A 74 874 713 HOH HOH . J 5 HOH A 75 875 815 HOH HOH . J 5 HOH A 76 876 758 HOH HOH . J 5 HOH A 77 877 698 HOH HOH . J 5 HOH A 78 878 716 HOH HOH . J 5 HOH A 79 879 740 HOH HOH . J 5 HOH A 80 880 837 HOH HOH . J 5 HOH A 81 881 710 HOH HOH . J 5 HOH A 82 882 754 HOH HOH . J 5 HOH A 83 883 755 HOH HOH . J 5 HOH A 84 884 764 HOH HOH . J 5 HOH A 85 885 759 HOH HOH . J 5 HOH A 86 886 793 HOH HOH . J 5 HOH A 87 887 671 HOH HOH . J 5 HOH A 88 888 712 HOH HOH . J 5 HOH A 89 889 717 HOH HOH . J 5 HOH A 90 890 686 HOH HOH . J 5 HOH A 91 891 675 HOH HOH . J 5 HOH A 92 892 729 HOH HOH . J 5 HOH A 93 893 734 HOH HOH . J 5 HOH A 94 894 749 HOH HOH . J 5 HOH A 95 895 744 HOH HOH . J 5 HOH A 96 896 834 HOH HOH . J 5 HOH A 97 897 820 HOH HOH . J 5 HOH A 98 898 706 HOH HOH . J 5 HOH A 99 899 681 HOH HOH . J 5 HOH A 100 900 683 HOH HOH . J 5 HOH A 101 901 679 HOH HOH . J 5 HOH A 102 902 831 HOH HOH . J 5 HOH A 103 903 835 HOH HOH . J 5 HOH A 104 904 827 HOH HOH . J 5 HOH A 105 905 826 HOH HOH . J 5 HOH A 106 906 669 HOH HOH . J 5 HOH A 107 907 690 HOH HOH . J 5 HOH A 108 908 768 HOH HOH . J 5 HOH A 109 909 733 HOH HOH . J 5 HOH A 110 910 701 HOH HOH . J 5 HOH A 111 911 775 HOH HOH . J 5 HOH A 112 912 773 HOH HOH . J 5 HOH A 113 913 684 HOH HOH . J 5 HOH A 114 914 688 HOH HOH . J 5 HOH A 115 915 730 HOH HOH . J 5 HOH A 116 916 677 HOH HOH . J 5 HOH A 117 917 821 HOH HOH . J 5 HOH A 118 918 776 HOH HOH . J 5 HOH A 119 919 767 HOH HOH . J 5 HOH A 120 920 745 HOH HOH . J 5 HOH A 121 921 785 HOH HOH . J 5 HOH A 122 922 738 HOH HOH . J 5 HOH A 123 923 709 HOH HOH . J 5 HOH A 124 924 830 HOH HOH . J 5 HOH A 125 925 817 HOH HOH . J 5 HOH A 126 926 795 HOH HOH . J 5 HOH A 127 927 790 HOH HOH . J 5 HOH A 128 928 704 HOH HOH . J 5 HOH A 129 929 774 HOH HOH . J 5 HOH A 130 930 695 HOH HOH . J 5 HOH A 131 931 722 HOH HOH . J 5 HOH A 132 932 696 HOH HOH . J 5 HOH A 133 933 715 HOH HOH . J 5 HOH A 134 934 721 HOH HOH . J 5 HOH A 135 935 787 HOH HOH . J 5 HOH A 136 936 802 HOH HOH . J 5 HOH A 137 937 762 HOH HOH . J 5 HOH A 138 938 668 HOH HOH . J 5 HOH A 139 939 753 HOH HOH . J 5 HOH A 140 940 751 HOH HOH . J 5 HOH A 141 941 808 HOH HOH . J 5 HOH A 142 942 824 HOH HOH . J 5 HOH A 143 943 765 HOH HOH . J 5 HOH A 144 944 823 HOH HOH . J 5 HOH A 145 945 728 HOH HOH . J 5 HOH A 146 946 822 HOH HOH . J 5 HOH A 147 947 693 HOH HOH . J 5 HOH A 148 948 752 HOH HOH . J 5 HOH A 149 949 804 HOH HOH . J 5 HOH A 150 950 818 HOH HOH . J 5 HOH A 151 951 782 HOH HOH . J 5 HOH A 152 952 806 HOH HOH . J 5 HOH A 153 953 828 HOH HOH . J 5 HOH A 154 954 781 HOH HOH . J 5 HOH A 155 955 766 HOH HOH . J 5 HOH A 156 956 797 HOH HOH . J 5 HOH A 157 957 829 HOH HOH . J 5 HOH A 158 958 813 HOH HOH . J 5 HOH A 159 959 816 HOH HOH . J 5 HOH A 160 960 838 HOH HOH . J 5 HOH A 161 961 798 HOH HOH . J 5 HOH A 162 962 800 HOH HOH . J 5 HOH A 163 963 746 HOH HOH . J 5 HOH A 164 964 805 HOH HOH . J 5 HOH A 165 965 814 HOH HOH . J 5 HOH A 166 966 742 HOH HOH . J 5 HOH A 167 967 789 HOH HOH . J 5 HOH A 168 968 825 HOH HOH . J 5 HOH A 169 969 811 HOH HOH . J 5 HOH A 170 970 783 HOH HOH . J 5 HOH A 171 971 809 HOH HOH . J 5 HOH A 172 972 784 HOH HOH . J 5 HOH A 173 973 803 HOH HOH . J 5 HOH A 174 974 812 HOH HOH . J 5 HOH A 175 975 786 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -20.525 _atom_site.Cartn_y 16.857 _atom_site.Cartn_z -7.453 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 704 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #