data_5N0P
#
_model_server_result.job_id            WgY81FyBrtaVFMhYztJW-w 
_model_server_result.datetime_utc      '2025-03-09 06:07:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5N0P 
#
_exptl.entry_id    5N0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N0P 
_cell.length_a            74.802 
_cell.length_b            100.216 
_cell.length_c            124.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 286 n n 
N HN1 SAH sing 287 n n 
N HN2 SAH sing 288 n n 
CA CB SAH sing 289 n n 
CA C SAH sing 290 n n 
CA HA SAH sing 291 n n 
CB CG SAH sing 292 n n 
CB HB1 SAH sing 293 n n 
CB HB2 SAH sing 294 n n 
CG SD SAH sing 295 n n 
CG HG1 SAH sing 296 n n 
CG HG2 SAH sing 297 n n 
SD C5' SAH sing 298 n n 
C O SAH doub 299 n n 
C OXT SAH sing 300 n n 
OXT HXT SAH sing 301 n n 
C5' C4' SAH sing 302 n n 
C5' "H5'1" SAH sing 303 n n 
C5' "H5'2" SAH sing 304 n n 
C4' O4' SAH sing 305 n n 
C4' C3' SAH sing 306 n n 
C4' H4' SAH sing 307 n n 
O4' C1' SAH sing 308 n n 
C3' O3' SAH sing 309 n n 
C3' C2' SAH sing 310 n n 
C3' H3' SAH sing 311 n n 
O3' HO3' SAH sing 312 n n 
C2' O2' SAH sing 313 n n 
C2' C1' SAH sing 314 n n 
C2' H2' SAH sing 315 n n 
O2' HO2' SAH sing 316 n n 
C1' N9 SAH sing 317 n n 
C1' H1' SAH sing 318 n n 
N9 C8 SAH sing 319 n y 
N9 C4 SAH sing 320 n y 
C8 N7 SAH doub 321 n y 
C8 H8 SAH sing 322 n n 
N7 C5 SAH sing 323 n y 
C5 C6 SAH sing 324 n y 
C5 C4 SAH doub 325 n y 
C6 N6 SAH sing 326 n n 
C6 N1 SAH doub 327 n y 
N6 HN61 SAH sing 328 n n 
N6 HN62 SAH sing 329 n n 
N1 C2 SAH sing 330 n y 
C2 N3 SAH doub 331 n y 
C2 H2 SAH sing 332 n n 
N3 C4 SAH sing 333 n y 
#
_atom_sites.entry_id                     5N0P 
_atom_sites.fract_transf_matrix[1][1]    0.013369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 501 501 SAH SAH . 
D 3 EDO A 1 502 2 EDO EDO . 
E 2 SAH B 1 501 501 SAH SAH . 
F 3 EDO B 1 502 1 EDO EDO . 
G 4 HOH A 1 601 74 HOH HOH . 
G 4 HOH A 2 602 52 HOH HOH . 
G 4 HOH A 3 603 6 HOH HOH . 
G 4 HOH A 4 604 11 HOH HOH . 
G 4 HOH A 5 605 119 HOH HOH . 
G 4 HOH A 6 606 61 HOH HOH . 
G 4 HOH A 7 607 117 HOH HOH . 
G 4 HOH A 8 608 71 HOH HOH . 
G 4 HOH A 9 609 60 HOH HOH . 
G 4 HOH A 10 610 27 HOH HOH . 
G 4 HOH A 11 611 64 HOH HOH . 
G 4 HOH A 12 612 90 HOH HOH . 
G 4 HOH A 13 613 82 HOH HOH . 
G 4 HOH A 14 614 95 HOH HOH . 
G 4 HOH A 15 615 89 HOH HOH . 
G 4 HOH A 16 616 75 HOH HOH . 
G 4 HOH A 17 617 45 HOH HOH . 
G 4 HOH A 18 618 79 HOH HOH . 
G 4 HOH A 19 619 40 HOH HOH . 
G 4 HOH A 20 620 118 HOH HOH . 
G 4 HOH A 21 621 50 HOH HOH . 
G 4 HOH A 22 622 12 HOH HOH . 
G 4 HOH A 23 623 32 HOH HOH . 
G 4 HOH A 24 624 81 HOH HOH . 
G 4 HOH A 25 625 107 HOH HOH . 
G 4 HOH A 26 626 58 HOH HOH . 
G 4 HOH A 27 627 29 HOH HOH . 
G 4 HOH A 28 628 39 HOH HOH . 
G 4 HOH A 29 629 104 HOH HOH . 
G 4 HOH A 30 630 83 HOH HOH . 
G 4 HOH A 31 631 46 HOH HOH . 
G 4 HOH A 32 632 3 HOH HOH . 
G 4 HOH A 33 633 93 HOH HOH . 
G 4 HOH A 34 634 1 HOH HOH . 
G 4 HOH A 35 635 4 HOH HOH . 
G 4 HOH A 36 636 68 HOH HOH . 
G 4 HOH A 37 637 7 HOH HOH . 
G 4 HOH A 38 638 111 HOH HOH . 
G 4 HOH A 39 639 116 HOH HOH . 
G 4 HOH A 40 640 114 HOH HOH . 
G 4 HOH A 41 641 25 HOH HOH . 
G 4 HOH A 42 642 113 HOH HOH . 
G 4 HOH A 43 643 98 HOH HOH . 
G 4 HOH A 44 644 18 HOH HOH . 
G 4 HOH A 45 645 76 HOH HOH . 
G 4 HOH A 46 646 86 HOH HOH . 
G 4 HOH A 47 647 9 HOH HOH . 
G 4 HOH A 48 648 105 HOH HOH . 
G 4 HOH A 49 649 23 HOH HOH . 
G 4 HOH A 50 650 94 HOH HOH . 
G 4 HOH A 51 651 31 HOH HOH . 
G 4 HOH A 52 652 100 HOH HOH . 
G 4 HOH A 53 653 97 HOH HOH . 
G 4 HOH A 54 654 73 HOH HOH . 
G 4 HOH A 55 655 103 HOH HOH . 
H 4 HOH B 1 601 70 HOH HOH . 
H 4 HOH B 2 602 67 HOH HOH . 
H 4 HOH B 3 603 28 HOH HOH . 
H 4 HOH B 4 604 34 HOH HOH . 
H 4 HOH B 5 605 63 HOH HOH . 
H 4 HOH B 6 606 57 HOH HOH . 
H 4 HOH B 7 607 48 HOH HOH . 
H 4 HOH B 8 608 99 HOH HOH . 
H 4 HOH B 9 609 21 HOH HOH . 
H 4 HOH B 10 610 15 HOH HOH . 
H 4 HOH B 11 611 65 HOH HOH . 
H 4 HOH B 12 612 19 HOH HOH . 
H 4 HOH B 13 613 88 HOH HOH . 
H 4 HOH B 14 614 72 HOH HOH . 
H 4 HOH B 15 615 20 HOH HOH . 
H 4 HOH B 16 616 55 HOH HOH . 
H 4 HOH B 17 617 59 HOH HOH . 
H 4 HOH B 18 618 53 HOH HOH . 
H 4 HOH B 19 619 96 HOH HOH . 
H 4 HOH B 20 620 115 HOH HOH . 
H 4 HOH B 21 621 106 HOH HOH . 
H 4 HOH B 22 622 10 HOH HOH . 
H 4 HOH B 23 623 87 HOH HOH . 
H 4 HOH B 24 624 22 HOH HOH . 
H 4 HOH B 25 625 66 HOH HOH . 
H 4 HOH B 26 626 56 HOH HOH . 
H 4 HOH B 27 627 43 HOH HOH . 
H 4 HOH B 28 628 92 HOH HOH . 
H 4 HOH B 29 629 108 HOH HOH . 
H 4 HOH B 30 630 80 HOH HOH . 
H 4 HOH B 31 631 49 HOH HOH . 
H 4 HOH B 32 632 33 HOH HOH . 
H 4 HOH B 33 633 109 HOH HOH . 
H 4 HOH B 34 634 14 HOH HOH . 
H 4 HOH B 35 635 112 HOH HOH . 
H 4 HOH B 36 636 85 HOH HOH . 
H 4 HOH B 37 637 2 HOH HOH . 
H 4 HOH B 38 638 5 HOH HOH . 
H 4 HOH B 39 639 44 HOH HOH . 
H 4 HOH B 40 640 91 HOH HOH . 
H 4 HOH B 41 641 51 HOH HOH . 
H 4 HOH B 42 642 54 HOH HOH . 
H 4 HOH B 43 643 26 HOH HOH . 
H 4 HOH B 44 644 101 HOH HOH . 
H 4 HOH B 45 645 42 HOH HOH . 
H 4 HOH B 46 646 41 HOH HOH . 
H 4 HOH B 47 647 78 HOH HOH . 
H 4 HOH B 48 648 47 HOH HOH . 
H 4 HOH B 49 649 30 HOH HOH . 
H 4 HOH B 50 650 35 HOH HOH . 
H 4 HOH B 51 651 37 HOH HOH . 
H 4 HOH B 52 652 120 HOH HOH . 
H 4 HOH B 53 653 24 HOH HOH . 
H 4 HOH B 54 654 84 HOH HOH . 
H 4 HOH B 55 655 17 HOH HOH . 
H 4 HOH B 56 656 69 HOH HOH . 
H 4 HOH B 57 657 13 HOH HOH . 
H 4 HOH B 58 658 77 HOH HOH . 
H 4 HOH B 59 659 8 HOH HOH . 
H 4 HOH B 60 660 16 HOH HOH . 
H 4 HOH B 61 661 62 HOH HOH . 
H 4 HOH B 62 662 36 HOH HOH . 
H 4 HOH B 63 663 110 HOH HOH . 
H 4 HOH B 64 664 102 HOH HOH . 
H 4 HOH B 65 665 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 5.65 -12.385 -20.617 1 52.81 ? N SAH 501 A 1 
HETATM 2 C CA SAH . . . C 2 6.239 -12.725 -19.287 1 54.04 ? CA SAH 501 A 1 
HETATM 3 C CB SAH . . . C 2 5.372 -13.748 -18.532 1 57.99 ? CB SAH 501 A 1 
HETATM 4 C CG SAH . . . C 2 4.005 -13.193 -18.117 1 62.28 ? CG SAH 501 A 1 
HETATM 5 S SD SAH . . . C 2 2.982 -14.438 -17.343 1 67.56 ? SD SAH 501 A 1 
HETATM 6 C C SAH . . . C 2 7.653 -13.229 -19.495 1 52.66 ? C SAH 501 A 1 
HETATM 7 O O SAH . . . C 2 8.372 -12.788 -20.407 1 48.84 ? O SAH 501 A 1 
HETATM 8 O OXT SAH . . . C 2 8.14 -14.083 -18.754 1 53.38 -1 OXT SAH 501 A 1 
HETATM 9 C C5' SAH . . . C 2 3.671 -14.557 -15.722 1 64.23 ? C5' SAH 501 A 1 
HETATM 10 C C4' SAH . . . C 2 4.388 -15.885 -15.461 1 64.1 ? C4' SAH 501 A 1 
HETATM 11 O O4' SAH . . . C 2 5.785 -15.734 -15.746 1 61.51 ? O4' SAH 501 A 1 
HETATM 12 C C3' SAH . . . C 2 4.313 -16.341 -13.994 1 65.02 ? C3' SAH 501 A 1 
HETATM 13 O O3' SAH . . . C 2 3.326 -17.342 -13.739 1 67.43 ? O3' SAH 501 A 1 
HETATM 14 C C2' SAH . . . C 2 5.692 -16.875 -13.658 1 64.09 ? C2' SAH 501 A 1 
HETATM 15 O O2' SAH . . . C 2 5.774 -18.301 -13.78 1 65.11 ? O2' SAH 501 A 1 
HETATM 16 C C1' SAH . . . C 2 6.605 -16.171 -14.653 1 60.45 ? C1' SAH 501 A 1 
HETATM 17 N N9 SAH . . . C 2 7.265 -15.027 -13.971 1 58.59 ? N9 SAH 501 A 1 
HETATM 18 C C8 SAH . . . C 2 6.897 -13.73 -14.011 1 57.63 ? C8 SAH 501 A 1 
HETATM 19 N N7 SAH . . . C 2 7.723 -12.957 -13.259 1 56.89 ? N7 SAH 501 A 1 
HETATM 20 C C5 SAH . . . C 2 8.634 -13.777 -12.708 1 56.93 ? C5 SAH 501 A 1 
HETATM 21 C C6 SAH . . . C 2 9.8 -13.618 -11.809 1 57.41 ? C6 SAH 501 A 1 
HETATM 22 N N6 SAH . . . C 2 10.12 -12.384 -11.35 1 57.62 ? N6 SAH 501 A 1 
HETATM 23 N N1 SAH . . . C 2 10.514 -14.728 -11.474 1 57.55 ? N1 SAH 501 A 1 
HETATM 24 C C2 SAH . . . C 2 10.176 -15.961 -11.939 1 58.01 ? C2 SAH 501 A 1 
HETATM 25 N N3 SAH . . . C 2 9.127 -16.163 -12.764 1 57.27 ? N3 SAH 501 A 1 
HETATM 26 C C4 SAH . . . C 2 8.339 -15.136 -13.179 1 57.36 ? C4 SAH 501 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#