data_5N0Z # _model_server_result.job_id 1vOp3H4iJOmuXDnZg06Ihw _model_server_result.datetime_utc '2025-03-30 23:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 5N0Z # _exptl.entry_id 5N0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.68 _cell.angle_gamma 90 _cell.entry_id 5N0Z _cell.length_a 147.15 _cell.length_b 60.94 _cell.length_c 115.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 652 A CYS 645 1_555 I C20 8FT . A 8FT 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? metalc ? metalc1 A OD1 ASN 160 A ASN 153 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc2 A OD1 ASP 162 A ASP 155 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A OD2 ASP 162 A ASP 155 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A OD2 ASP 164 A ASP 157 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc5 A OD1 ASP 164 A ASP 157 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc6 A OD2 ASP 164 A ASP 157 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A OD2 ASP 172 A ASP 165 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc8 A O ASP 172 A ASP 165 1_555 H CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc9 A OD1 ASP 175 A ASP 168 1_555 H CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 A O GLU 177 A GLU 170 1_555 H CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 A OD1 ASP 183 A ASP 176 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc12 A OD2 ASP 186 A ASP 179 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc13 A OD1 ASP 186 A ASP 179 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc14 A OD2 ASP 186 A ASP 179 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc15 A OE1 GLN 356 A GLN 349 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc16 A OE1 GLU 358 A GLU 351 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc17 A OE1 GLU 360 A GLU 353 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc18 A OD1 ASP 376 A ASP 369 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc19 A O SER 377 A SER 370 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc20 A OD1 ASN 380 A ASN 373 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc21 A OD1 ASP 395 A ASP 388 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc22 A O PHE 414 A PHE 407 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc23 A O LEU 417 A LEU 410 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc24 A OE1 GLU 418 A GLU 411 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc25 D CA CA . A CA 703 1_555 J O HOH . A HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc26 D CA CA . A CA 703 1_555 J O HOH . A HOH 943 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc27 E CA CA . A CA 704 1_555 J O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc28 E CA CA . A CA 704 1_555 J O HOH . A HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc29 G CA CA . A CA 706 1_555 J O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc30 H CA CA . A CA 707 1_555 J O HOH . A HOH 825 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc31 H CA CA . A CA 707 1_555 J O HOH . A HOH 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc32 H CA CA . A CA 707 1_555 J O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N0Z _atom_sites.fract_transf_matrix[1][1] 0.006796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 950 SO4 SO4 . C 2 SO4 A 1 702 952 SO4 SO4 . D 3 CA A 1 703 961 CA CA . E 3 CA A 1 704 962 CA CA . F 3 CA A 1 705 963 CA CA . G 3 CA A 1 706 964 CA CA . H 3 CA A 1 707 965 CA CA . I 4 8FT A 1 708 1 8FT UNL . J 5 HOH A 1 801 703 HOH HOH . J 5 HOH A 2 802 710 HOH HOH . J 5 HOH A 3 803 722 HOH HOH . J 5 HOH A 4 804 780 HOH HOH . J 5 HOH A 5 805 833 HOH HOH . J 5 HOH A 6 806 765 HOH HOH . J 5 HOH A 7 807 828 HOH HOH . J 5 HOH A 8 808 770 HOH HOH . J 5 HOH A 9 809 846 HOH HOH . J 5 HOH A 10 810 688 HOH HOH . J 5 HOH A 11 811 699 HOH HOH . J 5 HOH A 12 812 720 HOH HOH . J 5 HOH A 13 813 753 HOH HOH . J 5 HOH A 14 814 823 HOH HOH . J 5 HOH A 15 815 706 HOH HOH . J 5 HOH A 16 816 799 HOH HOH . J 5 HOH A 17 817 782 HOH HOH . J 5 HOH A 18 818 696 HOH HOH . J 5 HOH A 19 819 769 HOH HOH . J 5 HOH A 20 820 732 HOH HOH . J 5 HOH A 21 821 695 HOH HOH . J 5 HOH A 22 822 743 HOH HOH . J 5 HOH A 23 823 686 HOH HOH . J 5 HOH A 24 824 730 HOH HOH . J 5 HOH A 25 825 727 HOH HOH . J 5 HOH A 26 826 675 HOH HOH . J 5 HOH A 27 827 718 HOH HOH . J 5 HOH A 28 828 847 HOH HOH . J 5 HOH A 29 829 806 HOH HOH . J 5 HOH A 30 830 856 HOH HOH . J 5 HOH A 31 831 759 HOH HOH . J 5 HOH A 32 832 857 HOH HOH . J 5 HOH A 33 833 721 HOH HOH . J 5 HOH A 34 834 792 HOH HOH . J 5 HOH A 35 835 679 HOH HOH . J 5 HOH A 36 836 690 HOH HOH . J 5 HOH A 37 837 827 HOH HOH . J 5 HOH A 38 838 697 HOH HOH . J 5 HOH A 39 839 855 HOH HOH . J 5 HOH A 40 840 702 HOH HOH . J 5 HOH A 41 841 681 HOH HOH . J 5 HOH A 42 842 791 HOH HOH . J 5 HOH A 43 843 704 HOH HOH . J 5 HOH A 44 844 708 HOH HOH . J 5 HOH A 45 845 666 HOH HOH . J 5 HOH A 46 846 667 HOH HOH . J 5 HOH A 47 847 754 HOH HOH . J 5 HOH A 48 848 740 HOH HOH . J 5 HOH A 49 849 737 HOH HOH . J 5 HOH A 50 850 771 HOH HOH . J 5 HOH A 51 851 671 HOH HOH . J 5 HOH A 52 852 804 HOH HOH . J 5 HOH A 53 853 852 HOH HOH . J 5 HOH A 54 854 665 HOH HOH . J 5 HOH A 55 855 715 HOH HOH . J 5 HOH A 56 856 678 HOH HOH . J 5 HOH A 57 857 807 HOH HOH . J 5 HOH A 58 858 751 HOH HOH . J 5 HOH A 59 859 673 HOH HOH . J 5 HOH A 60 860 841 HOH HOH . J 5 HOH A 61 861 755 HOH HOH . J 5 HOH A 62 862 766 HOH HOH . J 5 HOH A 63 863 735 HOH HOH . J 5 HOH A 64 864 700 HOH HOH . J 5 HOH A 65 865 713 HOH HOH . J 5 HOH A 66 866 729 HOH HOH . J 5 HOH A 67 867 674 HOH HOH . J 5 HOH A 68 868 756 HOH HOH . J 5 HOH A 69 869 712 HOH HOH . J 5 HOH A 70 870 664 HOH HOH . J 5 HOH A 71 871 781 HOH HOH . J 5 HOH A 72 872 816 HOH HOH . J 5 HOH A 73 873 812 HOH HOH . J 5 HOH A 74 874 824 HOH HOH . J 5 HOH A 75 875 672 HOH HOH . J 5 HOH A 76 876 739 HOH HOH . J 5 HOH A 77 877 808 HOH HOH . J 5 HOH A 78 878 832 HOH HOH . J 5 HOH A 79 879 669 HOH HOH . J 5 HOH A 80 880 719 HOH HOH . J 5 HOH A 81 881 758 HOH HOH . J 5 HOH A 82 882 764 HOH HOH . J 5 HOH A 83 883 689 HOH HOH . J 5 HOH A 84 884 682 HOH HOH . J 5 HOH A 85 885 787 HOH HOH . J 5 HOH A 86 886 676 HOH HOH . J 5 HOH A 87 887 795 HOH HOH . J 5 HOH A 88 888 716 HOH HOH . J 5 HOH A 89 889 726 HOH HOH . J 5 HOH A 90 890 843 HOH HOH . J 5 HOH A 91 891 749 HOH HOH . J 5 HOH A 92 892 851 HOH HOH . J 5 HOH A 93 893 684 HOH HOH . J 5 HOH A 94 894 731 HOH HOH . J 5 HOH A 95 895 853 HOH HOH . J 5 HOH A 96 896 677 HOH HOH . J 5 HOH A 97 897 744 HOH HOH . J 5 HOH A 98 898 693 HOH HOH . J 5 HOH A 99 899 748 HOH HOH . J 5 HOH A 100 900 724 HOH HOH . J 5 HOH A 101 901 736 HOH HOH . J 5 HOH A 102 902 810 HOH HOH . J 5 HOH A 103 903 820 HOH HOH . J 5 HOH A 104 904 825 HOH HOH . J 5 HOH A 105 905 801 HOH HOH . J 5 HOH A 106 906 692 HOH HOH . J 5 HOH A 107 907 694 HOH HOH . J 5 HOH A 108 908 709 HOH HOH . J 5 HOH A 109 909 850 HOH HOH . J 5 HOH A 110 910 831 HOH HOH . J 5 HOH A 111 911 741 HOH HOH . J 5 HOH A 112 912 687 HOH HOH . J 5 HOH A 113 913 839 HOH HOH . J 5 HOH A 114 914 805 HOH HOH . J 5 HOH A 115 915 815 HOH HOH . J 5 HOH A 116 916 714 HOH HOH . J 5 HOH A 117 917 837 HOH HOH . J 5 HOH A 118 918 698 HOH HOH . J 5 HOH A 119 919 848 HOH HOH . J 5 HOH A 120 920 670 HOH HOH . J 5 HOH A 121 921 813 HOH HOH . J 5 HOH A 122 922 734 HOH HOH . J 5 HOH A 123 923 818 HOH HOH . J 5 HOH A 124 924 752 HOH HOH . J 5 HOH A 125 925 789 HOH HOH . J 5 HOH A 126 926 809 HOH HOH . J 5 HOH A 127 927 685 HOH HOH . J 5 HOH A 128 928 750 HOH HOH . J 5 HOH A 129 929 793 HOH HOH . J 5 HOH A 130 930 680 HOH HOH . J 5 HOH A 131 931 830 HOH HOH . J 5 HOH A 132 932 767 HOH HOH . J 5 HOH A 133 933 728 HOH HOH . J 5 HOH A 134 934 701 HOH HOH . J 5 HOH A 135 935 775 HOH HOH . J 5 HOH A 136 936 835 HOH HOH . J 5 HOH A 137 937 859 HOH HOH . J 5 HOH A 138 938 683 HOH HOH . J 5 HOH A 139 939 768 HOH HOH . J 5 HOH A 140 940 778 HOH HOH . J 5 HOH A 141 941 707 HOH HOH . J 5 HOH A 142 942 763 HOH HOH . J 5 HOH A 143 943 745 HOH HOH . J 5 HOH A 144 944 746 HOH HOH . J 5 HOH A 145 945 797 HOH HOH . J 5 HOH A 146 946 668 HOH HOH . J 5 HOH A 147 947 834 HOH HOH . J 5 HOH A 148 948 829 HOH HOH . J 5 HOH A 149 949 844 HOH HOH . J 5 HOH A 150 950 794 HOH HOH . J 5 HOH A 151 951 705 HOH HOH . J 5 HOH A 152 952 760 HOH HOH . J 5 HOH A 153 953 826 HOH HOH . J 5 HOH A 154 954 747 HOH HOH . J 5 HOH A 155 955 733 HOH HOH . J 5 HOH A 156 956 821 HOH HOH . J 5 HOH A 157 957 817 HOH HOH . J 5 HOH A 158 958 773 HOH HOH . J 5 HOH A 159 959 802 HOH HOH . J 5 HOH A 160 960 779 HOH HOH . J 5 HOH A 161 961 838 HOH HOH . J 5 HOH A 162 962 762 HOH HOH . J 5 HOH A 163 963 777 HOH HOH . J 5 HOH A 164 964 717 HOH HOH . J 5 HOH A 165 965 783 HOH HOH . J 5 HOH A 166 966 858 HOH HOH . J 5 HOH A 167 967 785 HOH HOH . J 5 HOH A 168 968 725 HOH HOH . J 5 HOH A 169 969 691 HOH HOH . J 5 HOH A 170 970 842 HOH HOH . J 5 HOH A 171 971 772 HOH HOH . J 5 HOH A 172 972 811 HOH HOH . J 5 HOH A 173 973 757 HOH HOH . J 5 HOH A 174 974 796 HOH HOH . J 5 HOH A 175 975 786 HOH HOH . J 5 HOH A 176 976 836 HOH HOH . J 5 HOH A 177 977 711 HOH HOH . J 5 HOH A 178 978 854 HOH HOH . J 5 HOH A 179 979 849 HOH HOH . J 5 HOH A 180 980 819 HOH HOH . J 5 HOH A 181 981 803 HOH HOH . J 5 HOH A 182 982 784 HOH HOH . J 5 HOH A 183 983 790 HOH HOH . J 5 HOH A 184 984 738 HOH HOH . J 5 HOH A 185 985 761 HOH HOH . J 5 HOH A 186 986 845 HOH HOH . J 5 HOH A 187 987 742 HOH HOH . J 5 HOH A 188 988 798 HOH HOH . J 5 HOH A 189 989 723 HOH HOH . J 5 HOH A 190 990 800 HOH HOH . J 5 HOH A 191 991 840 HOH HOH . J 5 HOH A 192 992 774 HOH HOH . J 5 HOH A 193 993 788 HOH HOH . J 5 HOH A 194 994 822 HOH HOH . J 5 HOH A 195 995 814 HOH HOH . J 5 HOH A 196 996 776 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -20.376 _atom_site.Cartn_y 17.004 _atom_site.Cartn_z -7.242 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 704 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #