data_5N1T # _model_server_result.job_id 0C3xxWAxcVgnsTYMxIavQg _model_server_result.datetime_utc '2024-11-22 14:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5N1T # _exptl.entry_id 5N1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N1T _cell.length_a 39.53 _cell.length_b 138.4 _cell.length_c 155.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 77 A CYS 73 1_555 E C8M FAD . A FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? covale ? covale2 A C ARG 196 A ARG 192 1_555 A N CSS 197 A CSS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C CSS 197 A CSS 193 1_555 A N PRO 198 A PRO 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B SG CYS 38 B CYS 11 1_555 F CAB HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? covale ? covale5 B SG CYS 41 B CYS 14 1_555 F CAC HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? covale ? covale6 B SG CYS 41 B CYS 14 1_555 F CBC HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc1 B NE2 HIS 42 B HIS 15 1_555 F FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc2 B SD MET 80 B MET 53 1_555 F FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 D N HIS 31 W HIS 1 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 D ND1 HIS 31 W HIS 1 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 D OD2 ASP 140 W ASP 110 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc6 D ND1 HIS 142 W HIS 112 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 97 n n PA O2A FAD sing 98 n n PA O5B FAD sing 99 n n PA O3P FAD sing 100 n n O2A HOA2 FAD sing 101 n n O5B C5B FAD sing 102 n n C5B C4B FAD sing 103 n n C5B H51A FAD sing 104 n n C5B H52A FAD sing 105 n n C4B O4B FAD sing 106 n n C4B C3B FAD sing 107 n n C4B H4B FAD sing 108 n n O4B C1B FAD sing 109 n n C3B O3B FAD sing 110 n n C3B C2B FAD sing 111 n n C3B H3B FAD sing 112 n n O3B HO3A FAD sing 113 n n C2B O2B FAD sing 114 n n C2B C1B FAD sing 115 n n C2B H2B FAD sing 116 n n O2B HO2A FAD sing 117 n n C1B N9A FAD sing 118 n n C1B H1B FAD sing 119 n n N9A C8A FAD sing 120 n y N9A C4A FAD sing 121 n y C8A N7A FAD doub 122 n y C8A H8A FAD sing 123 n n N7A C5A FAD sing 124 n y C5A C6A FAD sing 125 n y C5A C4A FAD doub 126 n y C6A N6A FAD sing 127 n n C6A N1A FAD doub 128 n y N6A H61A FAD sing 129 n n N6A H62A FAD sing 130 n n N1A C2A FAD sing 131 n y C2A N3A FAD doub 132 n y C2A H2A FAD sing 133 n n N3A C4A FAD sing 134 n y N1 C2 FAD sing 135 n n N1 C10 FAD doub 136 n n C2 O2 FAD doub 137 n n C2 N3 FAD sing 138 n n N3 C4 FAD sing 139 n n N3 HN3 FAD sing 140 n n C4 O4 FAD doub 141 n n C4 C4X FAD sing 142 n n C4X N5 FAD doub 143 n n C4X C10 FAD sing 144 n n N5 C5X FAD sing 145 n n C5X C6 FAD doub 146 n y C5X C9A FAD sing 147 n y C6 C7 FAD sing 148 n y C6 H6 FAD sing 149 n n C7 C7M FAD sing 150 n n C7 C8 FAD doub 151 n y C7M HM71 FAD sing 152 n n C7M HM72 FAD sing 153 n n C7M HM73 FAD sing 154 n n C8 C8M FAD sing 155 n n C8 C9 FAD sing 156 n y C8M HM81 FAD sing 157 n n C8M HM82 FAD sing 158 n n C8M HM83 FAD sing 159 n n C9 C9A FAD doub 160 n y C9 H9 FAD sing 161 n n C9A N10 FAD sing 162 n n N10 C10 FAD sing 163 n n N10 C1' FAD sing 164 n n C1' C2' FAD sing 165 n n C1' "H1'1" FAD sing 166 n n C1' "H1'2" FAD sing 167 n n C2' O2' FAD sing 168 n n C2' C3' FAD sing 169 n n C2' H2' FAD sing 170 n n O2' HO2' FAD sing 171 n n C3' O3' FAD sing 172 n n C3' C4' FAD sing 173 n n C3' H3' FAD sing 174 n n O3' HO3' FAD sing 175 n n C4' O4' FAD sing 176 n n C4' C5' FAD sing 177 n n C4' H4' FAD sing 178 n n O4' HO4' FAD sing 179 n n C5' O5' FAD sing 180 n n C5' "H5'1" FAD sing 181 n n C5' "H5'2" FAD sing 182 n n O5' P FAD sing 183 n n P O1P FAD doub 184 n n P O2P FAD sing 185 n n P O3P FAD sing 186 n n O2P HOP2 FAD sing 187 n n # _atom_sites.entry_id 5N1T _atom_sites.fract_transf_matrix[1][1] 0.025297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 FAD A 1 501 699 FAD FAD . F 5 HEC B 1 901 901 HEC HEC . G 6 CU W 1 201 1 CU CU . H 7 GOL W 1 202 1 GOL GOL . I 8 HOH A 1 601 47 HOH HOH . I 8 HOH A 2 602 17 HOH HOH . I 8 HOH A 3 603 23 HOH HOH . I 8 HOH A 4 604 40 HOH HOH . I 8 HOH A 5 605 14 HOH HOH . I 8 HOH A 6 606 26 HOH HOH . I 8 HOH A 7 607 7 HOH HOH . I 8 HOH A 8 608 32 HOH HOH . I 8 HOH A 9 609 29 HOH HOH . I 8 HOH A 10 610 1 HOH HOH . I 8 HOH A 11 611 3 HOH HOH . I 8 HOH A 12 612 25 HOH HOH . I 8 HOH A 13 613 35 HOH HOH . I 8 HOH A 14 614 4 HOH HOH . I 8 HOH A 15 615 38 HOH HOH . I 8 HOH A 16 616 5 HOH HOH . I 8 HOH A 17 617 28 HOH HOH . I 8 HOH A 18 618 21 HOH HOH . I 8 HOH A 19 619 2 HOH HOH . I 8 HOH A 20 620 42 HOH HOH . I 8 HOH A 21 621 41 HOH HOH . I 8 HOH A 22 622 57 HOH HOH . I 8 HOH A 23 623 18 HOH HOH . I 8 HOH A 24 624 48 HOH HOH . I 8 HOH A 25 625 24 HOH HOH . I 8 HOH A 26 626 8 HOH HOH . I 8 HOH A 27 627 12 HOH HOH . I 8 HOH A 28 628 30 HOH HOH . I 8 HOH A 29 629 58 HOH HOH . I 8 HOH A 30 630 16 HOH HOH . I 8 HOH A 31 631 44 HOH HOH . I 8 HOH A 32 632 9 HOH HOH . I 8 HOH A 33 633 20 HOH HOH . I 8 HOH A 34 634 11 HOH HOH . I 8 HOH A 35 635 19 HOH HOH . I 8 HOH A 36 636 46 HOH HOH . I 8 HOH A 37 637 13 HOH HOH . I 8 HOH A 38 638 45 HOH HOH . I 8 HOH A 39 639 43 HOH HOH . J 8 HOH B 1 1001 27 HOH HOH . J 8 HOH B 2 1002 37 HOH HOH . J 8 HOH B 3 1003 49 HOH HOH . J 8 HOH B 4 1004 50 HOH HOH . J 8 HOH B 5 1005 31 HOH HOH . J 8 HOH B 6 1006 22 HOH HOH . K 8 HOH M 1 201 6 HOH HOH . K 8 HOH M 2 202 34 HOH HOH . K 8 HOH M 3 203 53 HOH HOH . K 8 HOH M 4 204 52 HOH HOH . L 8 HOH W 1 301 36 HOH HOH . L 8 HOH W 2 302 54 HOH HOH . L 8 HOH W 3 303 39 HOH HOH . L 8 HOH W 4 304 15 HOH HOH . L 8 HOH W 5 305 33 HOH HOH . L 8 HOH W 6 306 51 HOH HOH . L 8 HOH W 7 307 10 HOH HOH . L 8 HOH W 8 308 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 4 5.074 0.259 15.64 1 37.13 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . E 4 5.226 1.018 16.937 1 43.61 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . E 4 4.806 1.072 14.396 1 36.33 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . E 4 3.855 -0.725 15.853 1 38.96 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . E 4 3.745 -1.619 16.965 1 41.93 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . E 4 2.241 -1.694 17.286 1 45.23 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . E 4 1.827 -2.931 17.851 1 45.84 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . E 4 1.757 -0.637 18.268 1 46.95 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . E 4 0.556 -0.093 17.709 1 52.58 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . E 4 1.49 -1.365 19.577 1 43.56 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . E 4 0.4 -0.833 20.331 1 43.61 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . E 4 1.118 -2.724 19.08 1 46.11 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . E 4 1.534 -3.763 20.04 1 50.16 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . E 4 2.759 -3.954 20.584 1 49.97 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . E 4 2.771 -5.056 21.386 1 51.87 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . E 4 1.524 -5.569 21.351 1 50.7 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . E 4 0.826 -6.716 21.975 1 50.18 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . E 4 1.48 -7.56 22.816 1 48.26 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . E 4 -0.479 -6.9 21.64 1 53.5 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . E 4 -1.163 -6.088 20.783 1 55.23 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . E 4 -0.602 -5.02 20.196 1 50.49 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . E 4 0.71 -4.722 20.45 1 49.95 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . E 4 10.475 5.853 10.311 1 36.73 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . E 4 10.585 6.208 8.999 1 39.1 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . E 4 10.576 5.29 8.142 1 39.62 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . E 4 10.698 7.511 8.604 1 37.25 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . E 4 10.72 8.506 9.503 1 33.94 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . E 4 10.842 9.695 9.151 1 36.17 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . E 4 10.561 8.194 10.936 1 33.3 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . E 4 10.52 9.157 11.863 1 34.38 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . E 4 10.444 8.877 13.188 1 35.67 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . E 4 10.447 9.94 14.084 1 34.88 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . E 4 10.307 9.68 15.435 1 39.07 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . E 4 10.297 10.869 16.381 1 40.27 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . E 4 10.172 8.261 15.949 1 37.6 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . E 4 9.949 8.003 17.451 1 39.96 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . E 4 10.167 7.204 15.025 1 32.94 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . E 4 10.312 7.458 13.657 1 34.68 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . E 4 10.295 6.438 12.656 1 34.63 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . E 4 10.456 6.781 11.306 1 34.36 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . E 4 10.248 5.011 12.961 1 36.75 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . E 4 8.947 4.286 12.992 1 37.53 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . E 4 8.172 4.91 13.977 1 38.43 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . E 4 9.271 2.892 13.5 1 40.13 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . E 4 10.546 2.396 12.982 1 40.42 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . E 4 8.06 2.015 13.211 1 39.06 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . E 4 7.025 2.358 14.143 1 45.09 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . E 4 8.343 0.547 13.377 1 36.43 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . E 4 7.163 -0.167 13.053 1 37.12 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . E 4 6.759 -1.392 14.013 1 41.26 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . E 4 5.464 -1.923 13.429 1 37.05 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . E 4 8.022 -2.253 14.13 1 36.44 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . E 4 6.372 -0.712 15.454 1 38.92 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 53 #