data_5N1T # _model_server_result.job_id DtyViAxzJW_3o360lxrZWg _model_server_result.datetime_utc '2024-11-22 14:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5N1T # _exptl.entry_id 5N1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N1T _cell.length_a 39.53 _cell.length_b 138.4 _cell.length_c 155.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 77 A CYS 73 1_555 E C8M FAD . A FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? covale ? covale2 A C ARG 196 A ARG 192 1_555 A N CSS 197 A CSS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C CSS 197 A CSS 193 1_555 A N PRO 198 A PRO 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B SG CYS 38 B CYS 11 1_555 F CAB HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? covale ? covale5 B SG CYS 41 B CYS 14 1_555 F CAC HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? covale ? covale6 B SG CYS 41 B CYS 14 1_555 F CBC HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc1 B NE2 HIS 42 B HIS 15 1_555 F FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc2 B SD MET 80 B MET 53 1_555 F FE HEC . B HEC 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 D N HIS 31 W HIS 1 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 D ND1 HIS 31 W HIS 1 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 D OD2 ASP 140 W ASP 110 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc6 D ND1 HIS 142 W HIS 112 1_555 G CU CU . W CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 247 n n FE NB HEC sing 248 n n FE NC HEC sing 249 n n FE ND HEC sing 250 n n CHA C1A HEC doub 251 n n CHA C4D HEC sing 252 n n CHA HHA HEC sing 253 n n CHB C4A HEC doub 254 n n CHB C1B HEC sing 255 n n CHB HHB HEC sing 256 n n CHC C4B HEC doub 257 n n CHC C1C HEC sing 258 n n CHC HHC HEC sing 259 n n CHD C4C HEC doub 260 n n CHD C1D HEC sing 261 n n CHD HHD HEC sing 262 n n NA C1A HEC sing 263 n y NA C4A HEC sing 264 n y C1A C2A HEC sing 265 n y C2A C3A HEC doub 266 n y C2A CAA HEC sing 267 n n C3A C4A HEC sing 268 n y C3A CMA HEC sing 269 n n CMA HMA1 HEC sing 270 n n CMA HMA2 HEC sing 271 n n CMA HMA3 HEC sing 272 n n CAA CBA HEC sing 273 n n CAA HAA1 HEC sing 274 n n CAA HAA2 HEC sing 275 n n CBA CGA HEC sing 276 n n CBA HBA1 HEC sing 277 n n CBA HBA2 HEC sing 278 n n CGA O1A HEC doub 279 n n CGA O2A HEC sing 280 n n O2A H2A HEC sing 281 n n NB C1B HEC sing 282 n y NB C4B HEC sing 283 n y C1B C2B HEC doub 284 n y C2B C3B HEC sing 285 n y C2B CMB HEC sing 286 n n C3B C4B HEC sing 287 n y C3B CAB HEC doub 288 e n CMB HMB1 HEC sing 289 n n CMB HMB2 HEC sing 290 n n CMB HMB3 HEC sing 291 n n CAB CBB HEC sing 292 n n CAB HAB HEC sing 293 n n CBB HBB1 HEC sing 294 n n CBB HBB2 HEC sing 295 n n CBB HBB3 HEC sing 296 n n NC C1C HEC sing 297 n y NC C4C HEC sing 298 n y C1C C2C HEC doub 299 n y C2C C3C HEC sing 300 n y C2C CMC HEC sing 301 n n C3C C4C HEC sing 302 n y C3C CAC HEC doub 303 e n CMC HMC1 HEC sing 304 n n CMC HMC2 HEC sing 305 n n CMC HMC3 HEC sing 306 n n CAC CBC HEC sing 307 n n CAC HAC HEC sing 308 n n CBC HBC1 HEC sing 309 n n CBC HBC2 HEC sing 310 n n CBC HBC3 HEC sing 311 n n ND C1D HEC sing 312 n y ND C4D HEC sing 313 n y C1D C2D HEC doub 314 n y C2D C3D HEC sing 315 n y C2D CMD HEC sing 316 n n C3D C4D HEC doub 317 n y C3D CAD HEC sing 318 n n CMD HMD1 HEC sing 319 n n CMD HMD2 HEC sing 320 n n CMD HMD3 HEC sing 321 n n CAD CBD HEC sing 322 n n CAD HAD1 HEC sing 323 n n CAD HAD2 HEC sing 324 n n CBD CGD HEC sing 325 n n CBD HBD1 HEC sing 326 n n CBD HBD2 HEC sing 327 n n CGD O1D HEC doub 328 n n CGD O2D HEC sing 329 n n O2D H2D HEC sing 330 n n # _atom_sites.entry_id 5N1T _atom_sites.fract_transf_matrix[1][1] 0.025297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 FAD A 1 501 699 FAD FAD . F 5 HEC B 1 901 901 HEC HEC . G 6 CU W 1 201 1 CU CU . H 7 GOL W 1 202 1 GOL GOL . I 8 HOH A 1 601 47 HOH HOH . I 8 HOH A 2 602 17 HOH HOH . I 8 HOH A 3 603 23 HOH HOH . I 8 HOH A 4 604 40 HOH HOH . I 8 HOH A 5 605 14 HOH HOH . I 8 HOH A 6 606 26 HOH HOH . I 8 HOH A 7 607 7 HOH HOH . I 8 HOH A 8 608 32 HOH HOH . I 8 HOH A 9 609 29 HOH HOH . I 8 HOH A 10 610 1 HOH HOH . I 8 HOH A 11 611 3 HOH HOH . I 8 HOH A 12 612 25 HOH HOH . I 8 HOH A 13 613 35 HOH HOH . I 8 HOH A 14 614 4 HOH HOH . I 8 HOH A 15 615 38 HOH HOH . I 8 HOH A 16 616 5 HOH HOH . I 8 HOH A 17 617 28 HOH HOH . I 8 HOH A 18 618 21 HOH HOH . I 8 HOH A 19 619 2 HOH HOH . I 8 HOH A 20 620 42 HOH HOH . I 8 HOH A 21 621 41 HOH HOH . I 8 HOH A 22 622 57 HOH HOH . I 8 HOH A 23 623 18 HOH HOH . I 8 HOH A 24 624 48 HOH HOH . I 8 HOH A 25 625 24 HOH HOH . I 8 HOH A 26 626 8 HOH HOH . I 8 HOH A 27 627 12 HOH HOH . I 8 HOH A 28 628 30 HOH HOH . I 8 HOH A 29 629 58 HOH HOH . I 8 HOH A 30 630 16 HOH HOH . I 8 HOH A 31 631 44 HOH HOH . I 8 HOH A 32 632 9 HOH HOH . I 8 HOH A 33 633 20 HOH HOH . I 8 HOH A 34 634 11 HOH HOH . I 8 HOH A 35 635 19 HOH HOH . I 8 HOH A 36 636 46 HOH HOH . I 8 HOH A 37 637 13 HOH HOH . I 8 HOH A 38 638 45 HOH HOH . I 8 HOH A 39 639 43 HOH HOH . J 8 HOH B 1 1001 27 HOH HOH . J 8 HOH B 2 1002 37 HOH HOH . J 8 HOH B 3 1003 49 HOH HOH . J 8 HOH B 4 1004 50 HOH HOH . J 8 HOH B 5 1005 31 HOH HOH . J 8 HOH B 6 1006 22 HOH HOH . K 8 HOH M 1 201 6 HOH HOH . K 8 HOH M 2 202 34 HOH HOH . K 8 HOH M 3 203 53 HOH HOH . K 8 HOH M 4 204 52 HOH HOH . L 8 HOH W 1 301 36 HOH HOH . L 8 HOH W 2 302 54 HOH HOH . L 8 HOH W 3 303 39 HOH HOH . L 8 HOH W 4 304 15 HOH HOH . L 8 HOH W 5 305 33 HOH HOH . L 8 HOH W 6 306 51 HOH HOH . L 8 HOH W 7 307 10 HOH HOH . L 8 HOH W 8 308 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . F 5 9.965 7.096 -7.516 1 39.37 ? FE HEC 901 B 1 HETATM 2 C CHA HEC . . . F 5 9.932 10.035 -9.383 1 49.23 ? CHA HEC 901 B 1 HETATM 3 C CHB HEC . . . F 5 9.217 5.329 -10.309 1 42.66 ? CHB HEC 901 B 1 HETATM 4 C CHC HEC . . . F 5 10.611 4.124 -5.792 1 44.34 ? CHC HEC 901 B 1 HETATM 5 C CHD HEC . . . F 5 10.271 8.875 -4.672 1 43.32 ? CHD HEC 901 B 1 HETATM 6 N NA HEC . . . F 5 9.65 7.614 -9.51 1 46.07 ? NA HEC 901 B 1 HETATM 7 C C1A HEC . . . F 5 9.625 8.808 -10.107 1 49.63 ? C1A HEC 901 B 1 HETATM 8 C C2A HEC . . . F 5 9.309 8.811 -11.563 1 50.23 ? C2A HEC 901 B 1 HETATM 9 C C3A HEC . . . F 5 9.11 7.386 -11.834 1 48.94 ? C3A HEC 901 B 1 HETATM 10 C C4A HEC . . . F 5 9.346 6.775 -10.506 1 47.92 ? C4A HEC 901 B 1 HETATM 11 C CMA HEC . . . F 5 8.775 6.667 -13.103 1 55.28 ? CMA HEC 901 B 1 HETATM 12 C CAA HEC . . . F 5 9.201 9.994 -12.493 1 52.26 ? CAA HEC 901 B 1 HETATM 13 C CBA HEC . . . F 5 7.722 10.368 -12.365 1 49.93 ? CBA HEC 901 B 1 HETATM 14 C CGA HEC . . . F 5 7.242 11.479 -13.289 1 55.23 ? CGA HEC 901 B 1 HETATM 15 O O1A HEC . . . F 5 8.051 12.241 -13.86 1 56.28 ? O1A HEC 901 B 1 HETATM 16 O O2A HEC . . . F 5 6.008 11.62 -13.452 1 55.61 ? O2A HEC 901 B 1 HETATM 17 N NB HEC . . . F 5 9.937 5.061 -7.974 1 43.9 ? NB HEC 901 B 1 HETATM 18 C C1B HEC . . . F 5 9.593 4.53 -9.169 1 41.1 ? C1B HEC 901 B 1 HETATM 19 C C2B HEC . . . F 5 9.613 3.063 -9.28 1 43.28 ? C2B HEC 901 B 1 HETATM 20 C C3B HEC . . . F 5 10.059 2.67 -7.948 1 46.12 ? C3B HEC 901 B 1 HETATM 21 C C4B HEC . . . F 5 10.218 3.976 -7.201 1 47.04 ? C4B HEC 901 B 1 HETATM 22 C CMB HEC . . . F 5 9.317 2.168 -10.451 1 42.19 ? CMB HEC 901 B 1 HETATM 23 C CAB HEC . . . F 5 10.249 1.224 -7.663 1 46.56 ? CAB HEC 901 B 1 HETATM 24 C CBB HEC . . . F 5 10.698 0.594 -6.403 1 53.98 ? CBB HEC 901 B 1 HETATM 25 N NC HEC . . . F 5 10.363 6.566 -5.536 1 44.61 ? NC HEC 901 B 1 HETATM 26 C C1C HEC . . . F 5 10.562 5.35 -4.977 1 44.63 ? C1C HEC 901 B 1 HETATM 27 C C2C HEC . . . F 5 10.797 5.358 -3.498 1 43.34 ? C2C HEC 901 B 1 HETATM 28 C C3C HEC . . . F 5 10.71 6.811 -3.201 1 46.74 ? C3C HEC 901 B 1 HETATM 29 C C4C HEC . . . F 5 10.427 7.428 -4.507 1 42.73 ? C4C HEC 901 B 1 HETATM 30 C CMC HEC . . . F 5 11.06 4.176 -2.613 1 45.72 ? CMC HEC 901 B 1 HETATM 31 C CAC HEC . . . F 5 10.787 7.63 -1.954 1 48.95 ? CAC HEC 901 B 1 HETATM 32 C CBC HEC . . . F 5 11.122 7.132 -0.601 1 61.15 ? CBC HEC 901 B 1 HETATM 33 N ND HEC . . . F 5 10.089 9.111 -7.106 1 40.75 ? ND HEC 901 B 1 HETATM 34 C C1D HEC . . . F 5 10.263 9.667 -5.913 1 42.34 ? C1D HEC 901 B 1 HETATM 35 C C2D HEC . . . F 5 10.356 11.146 -5.921 1 44.49 ? C2D HEC 901 B 1 HETATM 36 C C3D HEC . . . F 5 10.237 11.477 -7.35 1 46.95 ? C3D HEC 901 B 1 HETATM 37 C C4D HEC . . . F 5 10.094 10.146 -7.95 1 46.18 ? C4D HEC 901 B 1 HETATM 38 C CMD HEC . . . F 5 10.496 12.091 -4.778 1 42.75 ? CMD HEC 901 B 1 HETATM 39 C CAD HEC . . . F 5 10.288 12.803 -8.038 1 40.84 ? CAD HEC 901 B 1 HETATM 40 C CBD HEC . . . F 5 11.687 12.797 -8.646 1 43.64 ? CBD HEC 901 B 1 HETATM 41 C CGD HEC . . . F 5 12.808 13.187 -7.704 1 47.96 ? CGD HEC 901 B 1 HETATM 42 O O1D HEC . . . F 5 12.849 14.35 -7.243 1 48.97 ? O1D HEC 901 B 1 HETATM 43 O O2D HEC . . . F 5 13.682 12.332 -7.436 1 54.56 ? O2D HEC 901 B 1 # _model_server_stats.io_time_ms 311 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #