data_5N1V # _model_server_result.job_id e_bhza37UB219FNrNhPAgg _model_server_result.datetime_utc '2024-10-18 23:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":412}' # _entry.id 5N1V # _exptl.entry_id 5N1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 487.511 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pyrazolo-pyrimidine macrocycle' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N1V _cell.length_a 128.767 _cell.length_b 128.767 _cell.length_c 125.981 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,BA 1 1 B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 AA N N # _chem_comp.formula 'C25 H25 N7 O4' _chem_comp.formula_weight 487.511 _chem_comp.id 8GQ _chem_comp.mon_nstd_flag . _chem_comp.name 'pyrazolo-pyrimidine macrocycle' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C8 8GQ doub 1 n n C9 O1 8GQ sing 2 n n C9 C10 8GQ sing 3 n n C8 N 8GQ sing 4 n n C8 C7 8GQ sing 5 n n O1 C3 8GQ sing 6 n n N C4 8GQ sing 7 n n C10 C11 8GQ doub 8 e n C11 C12 8GQ sing 9 n n C12 O2 8GQ sing 10 n n C7 C6 8GQ sing 11 n n C3 C4 8GQ doub 12 n y C3 C2 8GQ sing 13 n y C4 C5 8GQ sing 14 n y O2 C13 8GQ sing 15 n n C2 C1 8GQ doub 16 n y C5 C6 8GQ sing 17 n n C5 C 8GQ doub 18 n y C13 C16 8GQ sing 19 n n C13 C14 8GQ sing 20 n n C16 N1 8GQ sing 21 n n C1 C 8GQ sing 22 n y C1 N6 8GQ sing 23 n n C14 C15 8GQ sing 24 n n N1 C15 8GQ sing 25 n n N1 C17 8GQ sing 26 n n C18 C17 8GQ sing 27 n y C18 C19 8GQ doub 28 n y N6 C19 8GQ sing 29 n n C15 C24 8GQ sing 30 n n C24 O3 8GQ sing 31 n n C17 N3 8GQ doub 32 n y C19 N2 8GQ sing 33 n y N3 C20 8GQ sing 34 n y N2 C20 8GQ sing 35 n y N2 N4 8GQ sing 36 n y C20 C21 8GQ doub 37 n y N4 C22 8GQ doub 38 n y C21 C22 8GQ sing 39 n y C21 C23 8GQ sing 40 n n C23 N5 8GQ trip 41 n n C2 H1 8GQ sing 42 n n N6 H2 8GQ sing 43 n n C7 H3 8GQ sing 44 n n C7 H4 8GQ sing 45 n n C9 H5 8GQ sing 46 n n C9 H6 8GQ sing 47 n n C10 H7 8GQ sing 48 n n C11 H8 8GQ sing 49 n n C12 H9 8GQ sing 50 n n C12 H10 8GQ sing 51 n n C13 H11 8GQ sing 52 n n C14 H12 8GQ sing 53 n n C14 H13 8GQ sing 54 n n C15 H14 8GQ sing 55 n n C16 H15 8GQ sing 56 n n C16 H16 8GQ sing 57 n n C22 H17 8GQ sing 58 n n C24 H18 8GQ sing 59 n n C24 H19 8GQ sing 60 n n C18 H20 8GQ sing 61 n n O3 H21 8GQ sing 62 n n N H22 8GQ sing 63 n n C6 H23 8GQ sing 64 n n C6 H24 8GQ sing 65 n n C H25 8GQ sing 66 n n # _atom_sites.entry_id 5N1V _atom_sites.fract_transf_matrix[1][1] 0.007766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 1 SO4 SO4 . D 2 SO4 A 1 402 2 SO4 SO4 . E 2 SO4 A 1 403 4 SO4 SO4 . F 2 SO4 A 1 404 5 SO4 SO4 . G 2 SO4 A 1 405 8 SO4 SO4 . H 3 EDO A 1 406 3 EDO EDO . I 3 EDO A 1 407 8 EDO EDO . J 3 EDO A 1 408 12 EDO EDO . K 3 EDO A 1 409 25 EDO EDO . L 3 EDO A 1 410 30 EDO EDO . M 3 EDO A 1 411 32 EDO EDO . N 3 EDO A 1 412 33 EDO EDO . O 4 8GQ A 1 413 1 8GQ INH . P 2 SO4 B 1 401 3 SO4 SO4 . Q 2 SO4 B 1 402 9 SO4 SO4 . R 3 EDO B 1 403 1 EDO EDO . S 3 EDO B 1 404 4 EDO EDO . T 3 EDO B 1 405 7 EDO EDO . U 3 EDO B 1 406 9 EDO EDO . V 3 EDO B 1 407 10 EDO EDO . W 3 EDO B 1 408 18 EDO EDO . X 3 EDO B 1 409 22 EDO EDO . Y 3 EDO B 1 410 31 EDO EDO . Z 3 EDO B 1 411 34 EDO EDO . AA 4 8GQ B 1 412 2 8GQ INH . BA 5 HOH A 1 501 30 HOH HOH . BA 5 HOH A 2 502 50 HOH HOH . BA 5 HOH A 3 503 16 HOH HOH . BA 5 HOH A 4 504 58 HOH HOH . BA 5 HOH A 5 505 13 HOH HOH . BA 5 HOH A 6 506 26 HOH HOH . BA 5 HOH A 7 507 67 HOH HOH . BA 5 HOH A 8 508 57 HOH HOH . BA 5 HOH A 9 509 60 HOH HOH . BA 5 HOH A 10 510 15 HOH HOH . BA 5 HOH A 11 511 12 HOH HOH . BA 5 HOH A 12 512 124 HOH HOH . BA 5 HOH A 13 513 94 HOH HOH . BA 5 HOH A 14 514 82 HOH HOH . BA 5 HOH A 15 515 3 HOH HOH . BA 5 HOH A 16 516 109 HOH HOH . BA 5 HOH A 17 517 20 HOH HOH . BA 5 HOH A 18 518 47 HOH HOH . BA 5 HOH A 19 519 93 HOH HOH . BA 5 HOH A 20 520 100 HOH HOH . BA 5 HOH A 21 521 104 HOH HOH . BA 5 HOH A 22 522 31 HOH HOH . BA 5 HOH A 23 523 40 HOH HOH . BA 5 HOH A 24 524 77 HOH HOH . BA 5 HOH A 25 525 81 HOH HOH . BA 5 HOH A 26 526 70 HOH HOH . BA 5 HOH A 27 527 91 HOH HOH . BA 5 HOH A 28 528 42 HOH HOH . BA 5 HOH A 29 529 143 HOH HOH . BA 5 HOH A 30 530 44 HOH HOH . BA 5 HOH A 31 531 25 HOH HOH . BA 5 HOH A 32 532 56 HOH HOH . BA 5 HOH A 33 533 28 HOH HOH . BA 5 HOH A 34 534 2 HOH HOH . BA 5 HOH A 35 535 33 HOH HOH . BA 5 HOH A 36 536 21 HOH HOH . BA 5 HOH A 37 537 146 HOH HOH . BA 5 HOH A 38 538 38 HOH HOH . BA 5 HOH A 39 539 142 HOH HOH . BA 5 HOH A 40 540 123 HOH HOH . BA 5 HOH A 41 541 136 HOH HOH . BA 5 HOH A 42 542 125 HOH HOH . BA 5 HOH A 43 543 76 HOH HOH . BA 5 HOH A 44 544 139 HOH HOH . BA 5 HOH A 45 545 135 HOH HOH . BA 5 HOH A 46 546 4 HOH HOH . BA 5 HOH A 47 547 108 HOH HOH . BA 5 HOH A 48 548 103 HOH HOH . BA 5 HOH A 49 549 54 HOH HOH . BA 5 HOH A 50 550 86 HOH HOH . BA 5 HOH A 51 551 78 HOH HOH . BA 5 HOH A 52 552 73 HOH HOH . BA 5 HOH A 53 553 29 HOH HOH . BA 5 HOH A 54 554 69 HOH HOH . BA 5 HOH A 55 555 137 HOH HOH . BA 5 HOH A 56 556 132 HOH HOH . BA 5 HOH A 57 557 140 HOH HOH . BA 5 HOH A 58 558 45 HOH HOH . BA 5 HOH A 59 559 138 HOH HOH . BA 5 HOH A 60 560 102 HOH HOH . BA 5 HOH A 61 561 89 HOH HOH . BA 5 HOH A 62 562 32 HOH HOH . BA 5 HOH A 63 563 141 HOH HOH . BA 5 HOH A 64 564 145 HOH HOH . BA 5 HOH A 65 565 126 HOH HOH . BA 5 HOH A 66 566 127 HOH HOH . CA 5 HOH B 1 501 24 HOH HOH . CA 5 HOH B 2 502 43 HOH HOH . CA 5 HOH B 3 503 53 HOH HOH . CA 5 HOH B 4 504 11 HOH HOH . CA 5 HOH B 5 505 101 HOH HOH . CA 5 HOH B 6 506 98 HOH HOH . CA 5 HOH B 7 507 14 HOH HOH . CA 5 HOH B 8 508 10 HOH HOH . CA 5 HOH B 9 509 36 HOH HOH . CA 5 HOH B 10 510 134 HOH HOH . CA 5 HOH B 11 511 95 HOH HOH . CA 5 HOH B 12 512 64 HOH HOH . CA 5 HOH B 13 513 61 HOH HOH . CA 5 HOH B 14 514 90 HOH HOH . CA 5 HOH B 15 515 35 HOH HOH . CA 5 HOH B 16 516 96 HOH HOH . CA 5 HOH B 17 517 49 HOH HOH . CA 5 HOH B 18 518 110 HOH HOH . CA 5 HOH B 19 519 122 HOH HOH . CA 5 HOH B 20 520 66 HOH HOH . CA 5 HOH B 21 521 37 HOH HOH . CA 5 HOH B 22 522 144 HOH HOH . CA 5 HOH B 23 523 19 HOH HOH . CA 5 HOH B 24 524 112 HOH HOH . CA 5 HOH B 25 525 9 HOH HOH . CA 5 HOH B 26 526 5 HOH HOH . CA 5 HOH B 27 527 23 HOH HOH . CA 5 HOH B 28 528 18 HOH HOH . CA 5 HOH B 29 529 17 HOH HOH . CA 5 HOH B 30 530 128 HOH HOH . CA 5 HOH B 31 531 51 HOH HOH . CA 5 HOH B 32 532 34 HOH HOH . CA 5 HOH B 33 533 106 HOH HOH . CA 5 HOH B 34 534 8 HOH HOH . CA 5 HOH B 35 535 133 HOH HOH . CA 5 HOH B 36 536 74 HOH HOH . CA 5 HOH B 37 537 129 HOH HOH . CA 5 HOH B 38 538 117 HOH HOH . CA 5 HOH B 39 539 48 HOH HOH . CA 5 HOH B 40 540 75 HOH HOH . CA 5 HOH B 41 541 115 HOH HOH . CA 5 HOH B 42 542 41 HOH HOH . CA 5 HOH B 43 543 46 HOH HOH . CA 5 HOH B 44 544 105 HOH HOH . CA 5 HOH B 45 545 88 HOH HOH . CA 5 HOH B 46 546 130 HOH HOH . CA 5 HOH B 47 547 114 HOH HOH . CA 5 HOH B 48 548 107 HOH HOH . CA 5 HOH B 49 549 121 HOH HOH . CA 5 HOH B 50 550 80 HOH HOH . CA 5 HOH B 51 551 59 HOH HOH . CA 5 HOH B 52 552 1 HOH HOH . CA 5 HOH B 53 553 22 HOH HOH . CA 5 HOH B 54 554 83 HOH HOH . CA 5 HOH B 55 555 71 HOH HOH . CA 5 HOH B 56 556 68 HOH HOH . CA 5 HOH B 57 557 116 HOH HOH . CA 5 HOH B 58 558 79 HOH HOH . CA 5 HOH B 59 559 39 HOH HOH . CA 5 HOH B 60 560 65 HOH HOH . CA 5 HOH B 61 561 119 HOH HOH . CA 5 HOH B 62 562 92 HOH HOH . CA 5 HOH B 63 563 7 HOH HOH . CA 5 HOH B 64 564 120 HOH HOH . CA 5 HOH B 65 565 85 HOH HOH . CA 5 HOH B 66 566 52 HOH HOH . CA 5 HOH B 67 567 6 HOH HOH . CA 5 HOH B 68 568 97 HOH HOH . CA 5 HOH B 69 569 111 HOH HOH . CA 5 HOH B 70 570 118 HOH HOH . CA 5 HOH B 71 571 99 HOH HOH . CA 5 HOH B 72 572 55 HOH HOH . CA 5 HOH B 73 573 63 HOH HOH . CA 5 HOH B 74 574 62 HOH HOH . CA 5 HOH B 75 575 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8GQ . . . AA 4 -44.39 6.429 -30.261 1 64.1 ? C1 8GQ 412 B 1 HETATM 2 C C2 8GQ . . . AA 4 -44.7 5.186 -30.812 1 66.13 ? C2 8GQ 412 B 1 HETATM 3 C C3 8GQ . . . AA 4 -44.742 5.028 -32.186 1 68.21 ? C3 8GQ 412 B 1 HETATM 4 N N6 8GQ . . . AA 4 -44.427 6.535 -28.857 1 58.3 ? N6 8GQ 412 B 1 HETATM 5 C C7 8GQ . . . AA 4 -43.107 7.989 -34.656 1 79.62 ? C7 8GQ 412 B 1 HETATM 6 C C8 8GQ . . . AA 4 -43.704 6.744 -35.258 1 81.67 ? C8 8GQ 412 B 1 HETATM 7 C C9 8GQ . . . AA 4 -46.267 3.295 -32.935 1 57.88 ? C9 8GQ 412 B 1 HETATM 8 C C10 8GQ . . . AA 4 -46.79 2.708 -31.681 1 55.1 ? C10 8GQ 412 B 1 HETATM 9 C C11 8GQ . . . AA 4 -47.659 1.716 -31.561 1 56.17 ? C11 8GQ 412 B 1 HETATM 10 C C12 8GQ . . . AA 4 -49.134 1.771 -31.303 1 56.36 ? C12 8GQ 412 B 1 HETATM 11 C C13 8GQ . . . AA 4 -49.997 2.961 -29.373 1 52.12 ? C13 8GQ 412 B 1 HETATM 12 C C14 8GQ . . . AA 4 -50.469 2.791 -27.937 1 51.09 ? C14 8GQ 412 B 1 HETATM 13 C C15 8GQ . . . AA 4 -49.204 2.991 -27.088 1 51.73 ? C15 8GQ 412 B 1 HETATM 14 C C16 8GQ . . . AA 4 -48.96 4.073 -29.271 1 49.39 ? C16 8GQ 412 B 1 HETATM 15 C C19 8GQ . . . AA 4 -45.271 5.838 -27.993 1 51.66 ? C19 8GQ 412 B 1 HETATM 16 C C20 8GQ . . . AA 4 -45.752 4.994 -25.821 1 44.95 ? C20 8GQ 412 B 1 HETATM 17 C C21 8GQ . . . AA 4 -45.133 5.09 -24.561 1 41.75 ? C21 8GQ 412 B 1 HETATM 18 C C22 8GQ . . . AA 4 -43.984 5.861 -24.784 1 45.18 ? C22 8GQ 412 B 1 HETATM 19 C C24 8GQ . . . AA 4 -48.617 1.68 -26.583 1 52.91 ? C24 8GQ 412 B 1 HETATM 20 N N5 8GQ . . . AA 4 -45.832 4.057 -22.325 1 42.03 ? N5 8GQ 412 B 1 HETATM 21 C C23 8GQ . . . AA 4 -45.557 4.508 -23.333 1 40.2 ? C23 8GQ 412 B 1 HETATM 22 N N4 8GQ . . . AA 4 -43.846 6.241 -26.056 1 48.54 ? N4 8GQ 412 B 1 HETATM 23 N N2 8GQ . . . AA 4 -44.936 5.709 -26.681 1 48.02 ? N2 8GQ 412 B 1 HETATM 24 C C18 8GQ . . . AA 4 -46.478 5.279 -28.401 1 49.46 ? C18 8GQ 412 B 1 HETATM 25 N N3 8GQ . . . AA 4 -46.887 4.38 -26.211 1 45.74 ? N3 8GQ 412 B 1 HETATM 26 C C17 8GQ . . . AA 4 -47.22 4.493 -27.518 1 48.31 ? C17 8GQ 412 B 1 HETATM 27 N N1 8GQ . . . AA 4 -48.333 3.794 -27.97 1 50.29 ? N1 8GQ 412 B 1 HETATM 28 O O3 8GQ . . . AA 4 -49.592 0.93 -25.858 1 53.05 ? O3 8GQ 412 B 1 HETATM 29 O O2 8GQ . . . AA 4 -49.488 1.727 -29.906 1 55.36 ? O2 8GQ 412 B 1 HETATM 30 O O1 8GQ . . . AA 4 -44.928 3.819 -32.821 1 62.89 ? O1 8GQ 412 B 1 HETATM 31 C C4 8GQ . . . AA 4 -44.447 6.107 -33.035 1 73.37 ? C4 8GQ 412 B 1 HETATM 32 N N 8GQ . . . AA 4 -44.346 5.913 -34.406 1 78.9 ? N 8GQ 412 B 1 HETATM 33 O O 8GQ . . . AA 4 -43.617 6.492 -36.458 1 84.51 ? O 8GQ 412 B 1 HETATM 34 C C6 8GQ . . . AA 4 -43.827 8.5 -33.409 1 76.12 ? C6 8GQ 412 B 1 HETATM 35 C C5 8GQ . . . AA 4 -44.163 7.361 -32.479 1 72.84 ? C5 8GQ 412 B 1 HETATM 36 C C 8GQ . . . AA 4 -44.144 7.519 -31.094 1 68.07 ? C 8GQ 412 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #