data_5N20 # _model_server_result.job_id PF-eOJNLEcvZUtV71hRgXQ _model_server_result.datetime_utc '2024-11-22 07:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5N20 # _exptl.entry_id 5N20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-2-[(3~{R})-3-(dimethylamino)pyrrolidin-1-yl]phenyl]ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.13 _cell.angle_gamma 90 _cell.entry_id 5N20 _cell.length_a 30.52 _cell.length_b 71.66 _cell.length_c 54.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 16.253194 0 52.765271 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 N9 O' _chem_comp.formula_weight 459.547 _chem_comp.id 8GN _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-2-[(3~{R})-3-(dimethylamino)pyrrolidin-1-yl]phenyl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N2 8GN sing 1 n n C13 N2 8GN sing 2 n n N2 C10 8GN sing 3 n n C9 C10 8GN sing 4 n n C9 C8 8GN sing 5 n n C10 C11 8GN sing 6 n n C8 N1 8GN sing 7 n n C C1 8GN sing 8 n n C11 N1 8GN sing 9 n n N1 C7 8GN sing 10 n n C1 N 8GN sing 11 n n C1 O 8GN doub 12 n n N C2 8GN sing 13 n n C7 C2 8GN doub 14 n y C7 C6 8GN sing 15 n y C2 C3 8GN sing 16 n y C6 C5 8GN doub 17 n y C3 C4 8GN doub 18 n y C5 C4 8GN sing 19 n y C4 N3 8GN sing 20 n n N3 C14 8GN sing 21 n n C23 C21 8GN sing 22 n n C23 C22 8GN sing 23 n n C21 C22 8GN sing 24 n n C21 N8 8GN sing 25 n n C15 C14 8GN sing 26 n y C15 C16 8GN doub 27 n y C14 N5 8GN doub 28 n y N8 C16 8GN sing 29 n n C16 N4 8GN sing 30 n y N5 C17 8GN sing 31 n y N4 C17 8GN sing 32 n y N4 N6 8GN sing 33 n y C17 C18 8GN doub 34 n y N6 C19 8GN doub 35 n y C18 C20 8GN sing 36 n n C18 C19 8GN sing 37 n y C20 N7 8GN trip 38 n n C3 H1 8GN sing 39 n n C8 H2 8GN sing 40 n n C8 H3 8GN sing 41 n n C9 H4 8GN sing 42 n n C9 H5 8GN sing 43 n n C10 H6 8GN sing 44 n n C11 H7 8GN sing 45 n n C11 H8 8GN sing 46 n n C12 H9 8GN sing 47 n n C12 H10 8GN sing 48 n n C12 H11 8GN sing 49 n n C13 H12 8GN sing 50 n n C13 H13 8GN sing 51 n n C13 H14 8GN sing 52 n n C15 H15 8GN sing 53 n n C19 H16 8GN sing 54 n n C21 H17 8GN sing 55 n n C22 H18 8GN sing 56 n n C22 H19 8GN sing 57 n n N8 H20 8GN sing 58 n n C23 H21 8GN sing 59 n n C23 H22 8GN sing 60 n n N3 H23 8GN sing 61 n n C5 H24 8GN sing 62 n n C6 H25 8GN sing 63 n n N H26 8GN sing 64 n n C H27 8GN sing 65 n n C H28 8GN sing 66 n n C H29 8GN sing 67 n n # _atom_sites.entry_id 5N20 _atom_sites.fract_transf_matrix[1][1] 0.032765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8GN A 1 201 1 8GN INH . C 3 HOH A 1 301 26 HOH HOH . C 3 HOH A 2 302 30 HOH HOH . C 3 HOH A 3 303 54 HOH HOH . C 3 HOH A 4 304 32 HOH HOH . C 3 HOH A 5 305 52 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 27 HOH HOH . C 3 HOH A 8 308 13 HOH HOH . C 3 HOH A 9 309 65 HOH HOH . C 3 HOH A 10 310 2 HOH HOH . C 3 HOH A 11 311 64 HOH HOH . C 3 HOH A 12 312 68 HOH HOH . C 3 HOH A 13 313 36 HOH HOH . C 3 HOH A 14 314 29 HOH HOH . C 3 HOH A 15 315 38 HOH HOH . C 3 HOH A 16 316 46 HOH HOH . C 3 HOH A 17 317 44 HOH HOH . C 3 HOH A 18 318 67 HOH HOH . C 3 HOH A 19 319 48 HOH HOH . C 3 HOH A 20 320 24 HOH HOH . C 3 HOH A 21 321 55 HOH HOH . C 3 HOH A 22 322 51 HOH HOH . C 3 HOH A 23 323 16 HOH HOH . C 3 HOH A 24 324 31 HOH HOH . C 3 HOH A 25 325 22 HOH HOH . C 3 HOH A 26 326 11 HOH HOH . C 3 HOH A 27 327 21 HOH HOH . C 3 HOH A 28 328 57 HOH HOH . C 3 HOH A 29 329 56 HOH HOH . C 3 HOH A 30 330 28 HOH HOH . C 3 HOH A 31 331 19 HOH HOH . C 3 HOH A 32 332 39 HOH HOH . C 3 HOH A 33 333 3 HOH HOH . C 3 HOH A 34 334 14 HOH HOH . C 3 HOH A 35 335 17 HOH HOH . C 3 HOH A 36 336 43 HOH HOH . C 3 HOH A 37 337 5 HOH HOH . C 3 HOH A 38 338 69 HOH HOH . C 3 HOH A 39 339 4 HOH HOH . C 3 HOH A 40 340 1 HOH HOH . C 3 HOH A 41 341 33 HOH HOH . C 3 HOH A 42 342 59 HOH HOH . C 3 HOH A 43 343 60 HOH HOH . C 3 HOH A 44 344 35 HOH HOH . C 3 HOH A 45 345 12 HOH HOH . C 3 HOH A 46 346 40 HOH HOH . C 3 HOH A 47 347 8 HOH HOH . C 3 HOH A 48 348 7 HOH HOH . C 3 HOH A 49 349 66 HOH HOH . C 3 HOH A 50 350 10 HOH HOH . C 3 HOH A 51 351 20 HOH HOH . C 3 HOH A 52 352 25 HOH HOH . C 3 HOH A 53 353 42 HOH HOH . C 3 HOH A 54 354 50 HOH HOH . C 3 HOH A 55 355 58 HOH HOH . C 3 HOH A 56 356 23 HOH HOH . C 3 HOH A 57 357 37 HOH HOH . C 3 HOH A 58 358 18 HOH HOH . C 3 HOH A 59 359 61 HOH HOH . C 3 HOH A 60 360 45 HOH HOH . C 3 HOH A 61 361 34 HOH HOH . C 3 HOH A 62 362 15 HOH HOH . C 3 HOH A 63 363 41 HOH HOH . C 3 HOH A 64 364 47 HOH HOH . C 3 HOH A 65 365 9 HOH HOH . C 3 HOH A 66 366 53 HOH HOH . C 3 HOH A 67 367 63 HOH HOH . C 3 HOH A 68 368 62 HOH HOH . C 3 HOH A 69 369 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8GN . . . B 2 14.991 -0.169 9.294 1 59.67 ? C1 8GN 201 A 1 HETATM 2 C C2 8GN . . . B 2 16.174 -2.199 10.273 1 54.73 ? C2 8GN 201 A 1 HETATM 3 C C3 8GN . . . B 2 16.567 -1.665 11.501 1 50.56 ? C3 8GN 201 A 1 HETATM 4 N N6 8GN . . . B 2 14.446 -0.667 17.849 1 22.4 ? N6 8GN 201 A 1 HETATM 5 C C7 8GN . . . B 2 16.604 -3.488 9.909 1 56.12 ? C7 8GN 201 A 1 HETATM 6 C C8 8GN . . . B 2 16.829 -3.505 7.36 1 61.91 ? C8 8GN 201 A 1 HETATM 7 C C9 8GN . . . B 2 16.641 -4.665 6.393 1 62.73 ? C9 8GN 201 A 1 HETATM 8 C C10 8GN . . . B 2 15.347 -5.307 6.903 1 63.44 ? C10 8GN 201 A 1 HETATM 9 C C11 8GN . . . B 2 15.547 -5.269 8.414 1 61.88 ? C11 8GN 201 A 1 HETATM 10 C C12 8GN . . . B 2 14.197 -6.533 5.049 1 65.18 ? C12 8GN 201 A 1 HETATM 11 C C13 8GN . . . B 2 16.001 -7.647 6.202 1 65.8 ? C13 8GN 201 A 1 HETATM 12 C C14 8GN . . . B 2 16.773 -1.624 14.702 1 34.48 ? C14 8GN 201 A 1 HETATM 13 C C15 8GN . . . B 2 15.41 -1.888 14.544 1 28.11 ? C15 8GN 201 A 1 HETATM 14 C C16 8GN . . . B 2 14.525 -1.596 15.581 1 18.65 ? C16 8GN 201 A 1 HETATM 15 C C19 8GN . . . B 2 15.414 -0.135 18.582 1 22.02 ? C19 8GN 201 A 1 HETATM 16 C C20 8GN . . . B 2 17.896 0.426 18.347 1 28.59 ? C20 8GN 201 A 1 HETATM 17 C C21 8GN . . . B 2 12.548 -2.242 14.253 1 27.34 ? C21 8GN 201 A 1 HETATM 18 C C22 8GN . . . B 2 11.269 -3.002 14.366 1 28.79 ? C22 8GN 201 A 1 HETATM 19 N N7 8GN . . . B 2 18.923 0.85 18.609 1 33.06 ? N7 8GN 201 A 1 HETATM 20 C C18 8GN . . . B 2 16.653 -0.137 17.928 1 24.6 ? C18 8GN 201 A 1 HETATM 21 N N4 8GN . . . B 2 15.055 -1.024 16.707 1 20.78 ? N4 8GN 201 A 1 HETATM 22 N N8 8GN . . . B 2 13.205 -1.792 15.483 1 18.47 ? N8 8GN 201 A 1 HETATM 23 C C23 8GN . . . B 2 12.415 -3.711 14.025 1 29.9 ? C23 8GN 201 A 1 HETATM 24 C C17 8GN . . . B 2 16.407 -0.739 16.726 1 23.34 ? C17 8GN 201 A 1 HETATM 25 N N5 8GN . . . B 2 17.275 -1.029 15.767 1 30.47 ? N5 8GN 201 A 1 HETATM 26 N N3 8GN . . . B 2 17.615 -2.041 13.699 1 41.2 ? N3 8GN 201 A 1 HETATM 27 C C4 8GN . . . B 2 17.408 -2.377 12.352 1 47.77 ? C4 8GN 201 A 1 HETATM 28 C C5 8GN . . . B 2 17.836 -3.646 11.982 1 51.46 ? C5 8GN 201 A 1 HETATM 29 C C6 8GN . . . B 2 17.417 -4.206 10.786 1 54.39 ? C6 8GN 201 A 1 HETATM 30 N N 8GN . . . B 2 15.428 -1.457 9.317 1 57.64 ? N 8GN 201 A 1 HETATM 31 O O 8GN . . . B 2 15.096 0.596 10.246 1 60.44 ? O 8GN 201 A 1 HETATM 32 C C 8GN . . . B 2 14.398 0.268 7.988 1 60.22 ? C 8GN 201 A 1 HETATM 33 N N1 8GN . . . B 2 16.273 -4.013 8.62 1 60.62 ? N1 8GN 201 A 1 HETATM 34 N N2 8GN . . . B 2 14.92 -6.659 6.315 1 65.25 ? N2 8GN 201 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #