data_5N28
#
_model_server_result.job_id            pL585I3sMjHT5HzcG3YOLQ 
_model_server_result.datetime_utc      '2024-11-04 23:05:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":605}' 
#
_entry.id    5N28 
#
_exptl.entry_id    5N28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              39.098 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'POTASSIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.8 
_cell.angle_gamma         90 
_cell.entry_id            5N28 
_cell.length_a            103.68 
_cell.length_b            81.16 
_cell.length_c            154.95 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 259 A LYS 259 1_555 A N MHS 260 A MHS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale2 A C MHS 260 A MHS 260 1_555 A N ALA 261 A ALA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale3 A C ARG 273 A ARG 273 1_555 A N AGM 274 A AGM 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C AGM 274 A AGM 274 1_555 A N ALA 275 A ALA 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale5 A C SER 401 A SER 401 1_555 A N MGN 402 A MGN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
covale ? covale6 A C MGN 402 A MGN 402 1_555 A N ARG 403 A ARG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale7 A C GLY 428 A GLY 428 1_555 A N TRX 429 A TRX 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale8 A C TRX 429 A TRX 429 1_555 A N TYR 430 A TYR 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale9 A C TYR 446 A TYR 446 1_555 A N GL3 447 A GL3 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale10 A C GL3 447 A GL3 447 1_555 A N TYR 448 A TYR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale11 D C LYS 259 D LYS 259 1_555 D N MHS 260 D MHS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale12 D C MHS 260 D MHS 260 1_555 D N ALA 261 D ALA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale13 D C ARG 273 D ARG 273 1_555 D N AGM 274 D AGM 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 D C AGM 274 D AGM 274 1_555 D N ALA 275 D ALA 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale15 D C SER 401 D SER 401 1_555 D N MGN 402 D MGN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale16 D C MGN 402 D MGN 402 1_555 D N ARG 403 D ARG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale17 D C GLY 428 D GLY 428 1_555 D N TRX 429 D TRX 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale18 D C TRX 429 D TRX 429 1_555 D N TYR 430 D TYR 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale19 D C TYR 446 D TYR 446 1_555 D N GL3 447 D GL3 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale20 D C GL3 447 D GL3 447 1_555 D N TYR 448 D TYR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 A OE1 GLN 150 A GLN 150 1_555 J NI F43 . A F43 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc2 A O GLY 218 A GLY 218 1_555 K K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc3 A O ARG 219 A ARG 219 1_555 K K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc4 A O CYS 221 A CYS 221 1_555 K K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc5 K K K . A K 605 1_555 D O GLY 218 D GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc6 K K K . A K 605 1_555 D O ARG 219 D ARG 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc7 K K K . A K 605 1_555 D O CYS 221 D CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc8 D OE1 GLN 150 D GLN 150 1_555 L NI F43 . D F43 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
#
_chem_comp.formula           'K 1' 
_chem_comp.formula_weight    39.098 
_chem_comp.id                K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'POTASSIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5N28 
_atom_sites.fract_transf_matrix[1][1]    0.009645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003097 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006778 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 COM A 1 601 553 COM COM . 
H 5 TP7 A 1 602 554 TP7 TP7 . 
I 5 TP7 A 1 603 554 TP7 TP7 . 
J 6 F43 A 1 604 555 F43 F43 . 
K 7 K A 1 605 1 K K . 
L 6 F43 D 1 601 555 F43 F43 . 
M 4 COM D 1 602 553 COM COM . 
N 8 HOH A 1 701 46 HOH HOH . 
N 8 HOH A 2 702 52 HOH HOH . 
N 8 HOH A 3 703 15 HOH HOH . 
N 8 HOH A 4 704 12 HOH HOH . 
N 8 HOH A 5 705 42 HOH HOH . 
N 8 HOH A 6 706 31 HOH HOH . 
N 8 HOH A 7 707 3 HOH HOH . 
N 8 HOH A 8 708 51 HOH HOH . 
N 8 HOH A 9 709 30 HOH HOH . 
O 8 HOH B 1 501 53 HOH HOH . 
O 8 HOH B 2 502 19 HOH HOH . 
O 8 HOH B 3 503 40 HOH HOH . 
O 8 HOH B 4 504 28 HOH HOH . 
O 8 HOH B 5 505 5 HOH HOH . 
O 8 HOH B 6 506 48 HOH HOH . 
O 8 HOH B 7 507 29 HOH HOH . 
O 8 HOH B 8 508 6 HOH HOH . 
O 8 HOH B 9 509 54 HOH HOH . 
P 8 HOH C 1 301 27 HOH HOH . 
P 8 HOH C 2 302 13 HOH HOH . 
P 8 HOH C 3 303 55 HOH HOH . 
Q 8 HOH D 1 701 32 HOH HOH . 
Q 8 HOH D 2 702 23 HOH HOH . 
Q 8 HOH D 3 703 21 HOH HOH . 
Q 8 HOH D 4 704 20 HOH HOH . 
Q 8 HOH D 5 705 4 HOH HOH . 
R 8 HOH E 1 501 38 HOH HOH . 
R 8 HOH E 2 502 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           K 
_atom_site.label_atom_id         K 
_atom_site.label_comp_id         K 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -3.203 
_atom_site.Cartn_y               0.194 
_atom_site.Cartn_z               24.306 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        72.97 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          K 
_atom_site.auth_comp_id          K 
_atom_site.auth_seq_id           605 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#