data_5N2A # _model_server_result.job_id f-HNlS1eIZ0JSh3-xSnubA _model_server_result.datetime_utc '2025-02-27 22:39:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5N2A # _exptl.entry_id 5N2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.197 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-THIOETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5N2A _cell.length_a 127.699 _cell.length_b 127.699 _cell.length_c 160.376 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 53.458667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 259 A LYS 259 1_555 A N MHS 260 A MHS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 A C MHS 260 A MHS 260 1_555 A N ALA 261 A ALA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 A C ARG 273 A ARG 273 1_555 A N AGM 274 A AGM 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C AGM 274 A AGM 274 1_555 A N ALA 275 A ALA 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale5 A C SER 401 A SER 401 1_555 A N MGN 402 A MGN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale6 A C MGN 402 A MGN 402 1_555 A N ARG 403 A ARG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale7 A C GLY 428 A GLY 428 1_555 A N TRX 429 A TRX 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 A C TRX 429 A TRX 429 1_555 A N TYR 430 A TYR 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale9 A C TYR 446 A TYR 446 1_555 A N GL3 447 A GL3 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale10 A C GL3 447 A GL3 447 1_555 A N TYR 448 A TYR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A OE1 GLN 150 A GLN 150 1_555 F NI F43 . A F43 603 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A O GLY 218 A GLY 218 1_555 G K K . A K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A O GLY 218 A GLY 218 1_555 G K K . A K 604 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc4 A O ARG 219 A ARG 219 1_555 G K K . A K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc5 A O ARG 219 A ARG 219 1_555 G K K . A K 604 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc6 A O CYS 221 A CYS 221 1_555 G K K . A K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc7 A O CYS 221 A CYS 221 1_555 G K K . A K 604 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'C2 H6 O3 S2' _chem_comp.formula_weight 142.197 _chem_comp.id COM _chem_comp.mon_nstd_flag . _chem_comp.name '1-THIOETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 COM sing 99 n n C1 S1 COM sing 100 n n C1 H11 COM sing 101 n n C1 H12 COM sing 102 n n C2 S2 COM sing 103 n n C2 H21 COM sing 104 n n C2 H22 COM sing 105 n n S1 HS1 COM sing 106 n n S2 O1S COM doub 107 n n S2 O2S COM doub 108 n n S2 O3S COM sing 109 n n O3S HOS3 COM sing 110 n n # _atom_sites.entry_id 5N2A _atom_sites.fract_transf_matrix[1][1] 0.007831 _atom_sites.fract_transf_matrix[1][2] 0.004521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 COM A 1 601 553 COM COM . E 5 TP7 A 1 602 554 TP7 TP7 . F 6 F43 A 1 603 555 F43 F43 . G 7 K A 1 604 1 K K . H 8 BR C 1 301 1 BR BR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 COM . . . D 4 -29.948 8.584 2.297 1 74.61 ? C1 COM 601 A 1 HETATM 2 C C2 COM . . . D 4 -30.907 7.416 2.183 1 77.8 ? C2 COM 601 A 1 HETATM 3 S S1 COM . . . D 4 -28.914 8.411 3.727 1 70.92 ? S1 COM 601 A 1 HETATM 4 S S2 COM . . . D 4 -31.874 7.553 0.696 1 80.94 ? S2 COM 601 A 1 HETATM 5 O O1S COM . . . D 4 -32.866 6.422 0.558 1 82.3 ? O1S COM 601 A 1 HETATM 6 O O2S COM . . . D 4 -31.072 7.32 -0.558 1 81.92 ? O2S COM 601 A 1 HETATM 7 O O3S COM . . . D 4 -32.565 8.89 0.671 1 80.76 ? O3S COM 601 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #