data_5N2A # _model_server_result.job_id TUkNP1MjHDzV7l5FDxPB1g _model_server_result.datetime_utc '2025-02-27 22:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 5N2A # _exptl.entry_id 5N2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 906.58 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FACTOR 430' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5N2A _cell.length_a 127.699 _cell.length_b 127.699 _cell.length_c 160.376 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 53.458667 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 259 A LYS 259 1_555 A N MHS 260 A MHS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 A C MHS 260 A MHS 260 1_555 A N ALA 261 A ALA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 A C ARG 273 A ARG 273 1_555 A N AGM 274 A AGM 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C AGM 274 A AGM 274 1_555 A N ALA 275 A ALA 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale5 A C SER 401 A SER 401 1_555 A N MGN 402 A MGN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale6 A C MGN 402 A MGN 402 1_555 A N ARG 403 A ARG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale7 A C GLY 428 A GLY 428 1_555 A N TRX 429 A TRX 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 A C TRX 429 A TRX 429 1_555 A N TYR 430 A TYR 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale9 A C TYR 446 A TYR 446 1_555 A N GL3 447 A GL3 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale10 A C GL3 447 A GL3 447 1_555 A N TYR 448 A TYR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A OE1 GLN 150 A GLN 150 1_555 F NI F43 . A F43 603 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A O GLY 218 A GLY 218 1_555 G K K . A K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A O GLY 218 A GLY 218 1_555 G K K . A K 604 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc4 A O ARG 219 A ARG 219 1_555 G K K . A K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc5 A O ARG 219 A ARG 219 1_555 G K K . A K 604 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc6 A O CYS 221 A CYS 221 1_555 G K K . A K 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc7 A O CYS 221 A CYS 221 1_555 G K K . A K 604 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'C42 H51 N6 Ni O13 1' _chem_comp.formula_weight 906.58 _chem_comp.id F43 _chem_comp.mon_nstd_flag . _chem_comp.name 'FACTOR 430' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NI NA F43 sing 124 n n NI NB F43 sing 125 n n NI NC F43 sing 126 n n NI ND F43 sing 127 n n NA C1A F43 doub 128 n n NA C4A F43 sing 129 n n CHA C1A F43 sing 130 n n CHA C4D F43 sing 131 n n C1A C2A F43 sing 132 n n C2A C3A F43 sing 133 n n C2A C5A F43 sing 134 n n C2A C9A F43 sing 135 n n C3A C4A F43 sing 136 n n C3A CAA F43 sing 137 n n C4A CHB F43 sing 138 n n C5A C6A F43 sing 139 n n C6A O7A F43 doub 140 n n C6A N8A F43 sing 141 n n CAA CBA F43 sing 142 n n CBA CCA F43 sing 143 n n CCA ODA F43 sing 144 n n CCA OEA F43 doub 145 n n NB C1B F43 sing 146 n n NB C4B F43 doub 147 n n CHB C1B F43 sing 148 n n C1B C2B F43 sing 149 n n C1B N5B F43 sing 150 n n C2B C3B F43 sing 151 n n C2B C8B F43 sing 152 n n C2B C9B F43 sing 153 n n C3B C4B F43 sing 154 n n C3B CAB F43 sing 155 n n C4B CHC F43 sing 156 n n N5B C6B F43 sing 157 n n C6B O7B F43 doub 158 n n C6B C8B F43 sing 159 n n CAB CBB F43 sing 160 n n CBB CCB F43 sing 161 n n CCB ODB F43 doub 162 n n CCB OEB F43 sing 163 n n NC C1C F43 sing 164 n n NC C4C F43 sing 165 n n CHC C1C F43 doub 166 n n C1C C2C F43 sing 167 n n C2C C3C F43 sing 168 n n C2C C5C F43 sing 169 n n C3C C4C F43 sing 170 n n C3C C8C F43 sing 171 n n C4C CHD F43 doub 172 n n C5C C6C F43 sing 173 n n C6C O7C F43 doub 174 n n C6C O8C F43 sing 175 n n C8C C9C F43 sing 176 n n C9C CAC F43 sing 177 n n CAC OBC F43 sing 178 n n CAC OCC F43 doub 179 n n ND C1D F43 doub 180 n n ND C4D F43 sing 181 n n CHD C7D F43 sing 182 n n CHD C1D F43 sing 183 n n C5D C6D F43 sing 184 n n C5D C2D F43 sing 185 n n C6D C7D F43 sing 186 n n C7D O8D F43 doub 187 n n C9D CAD F43 sing 188 n n C9D C3D F43 sing 189 n n CAD OBD F43 doub 190 n n CAD OCD F43 sing 191 n n C1D C2D F43 sing 192 n n C2D C3D F43 sing 193 n n C3D C4D F43 sing 194 n n C4A H4A F43 sing 195 n n CHA HHA1 F43 sing 196 n n CHA HHA2 F43 sing 197 n n C4D H4D F43 sing 198 n n C3A H3A F43 sing 199 n n C5A H5A1 F43 sing 200 n n C5A H5A2 F43 sing 201 n n C9A H9A1 F43 sing 202 n n C9A H9A2 F43 sing 203 n n C9A H9A3 F43 sing 204 n n CAA HAA1 F43 sing 205 n n CAA HAA2 F43 sing 206 n n CHB HHB1 F43 sing 207 n n CHB HHB2 F43 sing 208 n n N8A H8A1 F43 sing 209 n n N8A H8A2 F43 sing 210 n n CBA HBA1 F43 sing 211 n n CBA HBA2 F43 sing 212 n n ODA HDA F43 sing 213 n n N5B H5B F43 sing 214 n n C3B H3B F43 sing 215 n n C8B H8B1 F43 sing 216 n n C8B H8B2 F43 sing 217 n n C9B H9B1 F43 sing 218 n n C9B H9B2 F43 sing 219 n n C9B H9B3 F43 sing 220 n n CAB HAB1 F43 sing 221 n n CAB HAB2 F43 sing 222 n n CHC HHC F43 sing 223 n n CBB HBB1 F43 sing 224 n n CBB HBB2 F43 sing 225 n n OEB HEB F43 sing 226 n n C2C H2C F43 sing 227 n n C3C H3C F43 sing 228 n n C5C H5C1 F43 sing 229 n n C5C H5C2 F43 sing 230 n n C8C H8C1 F43 sing 231 n n C8C H8C2 F43 sing 232 n n O8C H8C F43 sing 233 n n C9C H9C1 F43 sing 234 n n C9C H9C2 F43 sing 235 n n OBC HBC F43 sing 236 n n C5D H5D1 F43 sing 237 n n C5D H5D2 F43 sing 238 n n C6D H6D1 F43 sing 239 n n C6D H6D2 F43 sing 240 n n C2D H2D F43 sing 241 n n C9D H9D1 F43 sing 242 n n C9D H9D2 F43 sing 243 n n C3D H3D F43 sing 244 n n OCD HCD F43 sing 245 n n # _atom_sites.entry_id 5N2A _atom_sites.fract_transf_matrix[1][1] 0.007831 _atom_sites.fract_transf_matrix[1][2] 0.004521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 COM A 1 601 553 COM COM . E 5 TP7 A 1 602 554 TP7 TP7 . F 6 F43 A 1 603 555 F43 F43 . G 7 K A 1 604 1 K K . H 8 BR C 1 301 1 BR BR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 NI NI F43 . . . F 6 -26.293 7.844 1.979 1 59.41 ? NI F43 603 A 1 HETATM 2 N NA F43 . . . F 6 -25.82 6.297 3.25 1 59.58 ? NA F43 603 A 1 HETATM 3 C CHA F43 . . . F 6 -25.298 7.826 5.042 1 58.75 ? CHA F43 603 A 1 HETATM 4 C C1A F43 . . . F 6 -25.281 6.461 4.387 1 59.16 ? C1A F43 603 A 1 HETATM 5 C C2A F43 . . . F 6 -24.602 5.198 4.915 1 58.44 ? C2A F43 603 A 1 HETATM 6 C C3A F43 . . . F 6 -24.737 4.302 3.674 1 58.38 ? C3A F43 603 A 1 HETATM 7 C C4A F43 . . . F 6 -25.984 4.868 2.981 1 59.16 ? C4A F43 603 A 1 HETATM 8 C C5A F43 . . . F 6 -25.342 4.608 6.132 1 58.22 ? C5A F43 603 A 1 HETATM 9 C C6A F43 . . . F 6 -24.916 3.203 6.555 1 57.95 ? C6A F43 603 A 1 HETATM 10 O O7A F43 . . . F 6 -23.923 2.993 7.24 1 56.42 ? O7A F43 603 A 1 HETATM 11 N N8A F43 . . . F 6 -25.657 2.257 6.175 1 58.99 ? N8A F43 603 A 1 HETATM 12 C C9A F43 . . . F 6 -23.165 5.528 5.31 1 58.41 ? C9A F43 603 A 1 HETATM 13 C CAA F43 . . . F 6 -23.492 4.267 2.766 1 57.89 ? CAA F43 603 A 1 HETATM 14 C CBA F43 . . . F 6 -22.764 2.937 2.918 1 57.28 ? CBA F43 603 A 1 HETATM 15 C CCA F43 . . . F 6 -21.592 2.754 1.986 1 56.83 ? CCA F43 603 A 1 HETATM 16 O ODA F43 . . . F 6 -21.201 3.679 1.237 1 57.86 ? ODA F43 603 A 1 HETATM 17 O OEA F43 . . . F 6 -21.043 1.637 2.022 1 55.78 ? OEA F43 603 A 1 HETATM 18 N NB F43 . . . F 6 -27.311 6.557 0.759 1 61.03 ? NB F43 603 A 1 HETATM 19 C CHB F43 . . . F 6 -26.142 4.593 1.492 1 59.8 ? CHB F43 603 A 1 HETATM 20 C C1B F43 . . . F 6 -27.486 5.128 1.01 1 61.26 ? C1B F43 603 A 1 HETATM 21 C C2B F43 . . . F 6 -28.002 4.544 -0.325 1 61.88 ? C2B F43 603 A 1 HETATM 22 C C3B F43 . . . F 6 -27.926 5.722 -1.306 1 63.39 ? C3B F43 603 A 1 HETATM 23 C C4B F43 . . . F 6 -27.761 6.882 -0.371 1 62.24 ? C4B F43 603 A 1 HETATM 24 N N5B F43 . . . F 6 -28.578 4.899 1.958 1 62 ? N5B F43 603 A 1 HETATM 25 C C6B F43 . . . F 6 -29.643 4.325 1.42 1 62.02 ? C6B F43 603 A 1 HETATM 26 O O7B F43 . . . F 6 -30.657 4.01 2.027 1 61.73 ? O7B F43 603 A 1 HETATM 27 C C8B F43 . . . F 6 -29.455 4.141 -0.066 1 61.97 ? C8B F43 603 A 1 HETATM 28 C C9B F43 . . . F 6 -27.302 3.286 -0.837 1 61.32 ? C9B F43 603 A 1 HETATM 29 C CAB F43 . . . F 6 -26.743 5.679 -2.277 1 65.92 ? CAB F43 603 A 1 HETATM 30 C CBB F43 . . . F 6 -26.878 6.691 -3.412 1 69.26 ? CBB F43 603 A 1 HETATM 31 C CCB F43 . . . F 6 -25.759 6.516 -4.408 1 71.01 ? CCB F43 603 A 1 HETATM 32 O ODB F43 . . . F 6 -25.784 5.489 -5.115 1 72.42 ? ODB F43 603 A 1 HETATM 33 O OEB F43 . . . F 6 -24.869 7.392 -4.493 1 70.32 ? OEB F43 603 A 1 HETATM 34 N NC F43 . . . F 6 -26.735 9.427 0.758 1 60.32 ? NC F43 603 A 1 HETATM 35 C CHC F43 . . . F 6 -28.168 8.246 -0.721 1 61.17 ? CHC F43 603 A 1 HETATM 36 C C1C F43 . . . F 6 -27.546 9.348 -0.304 1 60.29 ? C1C F43 603 A 1 HETATM 37 C C2C F43 . . . F 6 -27.725 10.65 -1.014 1 60.35 ? C2C F43 603 A 1 HETATM 38 C C3C F43 . . . F 6 -26.678 11.512 -0.333 1 60.55 ? C3C F43 603 A 1 HETATM 39 C C4C F43 . . . F 6 -26.282 10.693 0.878 1 60.17 ? C4C F43 603 A 1 HETATM 40 C C5C F43 . . . F 6 -29.136 11.184 -0.767 1 60.71 ? C5C F43 603 A 1 HETATM 41 C C6C F43 . . . F 6 -29.486 12.348 -1.667 1 62.31 ? C6C F43 603 A 1 HETATM 42 O O7C F43 . . . F 6 -29.208 12.293 -2.884 1 63.75 ? O7C F43 603 A 1 HETATM 43 O O8C F43 . . . F 6 -30.064 13.327 -1.153 1 62.31 ? O8C F43 603 A 1 HETATM 44 C C8C F43 . . . F 6 -25.487 11.762 -1.253 1 62.01 ? C8C F43 603 A 1 HETATM 45 C C9C F43 . . . F 6 -25.739 12.774 -2.374 1 63.7 ? C9C F43 603 A 1 HETATM 46 C CAC F43 . . . F 6 -24.457 13.044 -3.135 1 65.75 ? CAC F43 603 A 1 HETATM 47 O OBC F43 . . . F 6 -23.367 12.677 -2.643 1 67.13 ? OBC F43 603 A 1 HETATM 48 O OCC F43 . . . F 6 -24.523 13.634 -4.235 1 66.4 ? OCC F43 603 A 1 HETATM 49 N ND F43 . . . F 6 -25.128 9.128 3.051 1 59.21 ? ND F43 603 A 1 HETATM 50 C CHD F43 . . . F 6 -25.631 11.199 1.949 1 59.76 ? CHD F43 603 A 1 HETATM 51 C C5D F43 . . . F 6 -24.069 12.386 4.142 1 58.46 ? C5D F43 603 A 1 HETATM 52 C C6D F43 . . . F 6 -24.459 13.282 2.966 1 58.83 ? C6D F43 603 A 1 HETATM 53 C C7D F43 . . . F 6 -25.631 12.662 2.232 1 59.51 ? C7D F43 603 A 1 HETATM 54 O O8D F43 . . . F 6 -26.552 13.407 1.919 1 59.84 ? O8D F43 603 A 1 HETATM 55 C C9D F43 . . . F 6 -22.363 9.641 5.314 1 58.25 ? C9D F43 603 A 1 HETATM 56 C CAD F43 . . . F 6 -21.844 10.573 6.386 1 58.8 ? CAD F43 603 A 1 HETATM 57 O OBD F43 . . . F 6 -20.618 10.534 6.646 1 59.1 ? OBD F43 603 A 1 HETATM 58 O OCD F43 . . . F 6 -22.624 11.343 6.992 1 58.75 ? OCD F43 603 A 1 HETATM 59 C C1D F43 . . . F 6 -24.928 10.428 2.806 1 59.44 ? C1D F43 603 A 1 HETATM 60 C C2D F43 . . . F 6 -23.813 10.949 3.683 1 58.76 ? C2D F43 603 A 1 HETATM 61 C C3D F43 . . . F 6 -23.783 9.931 4.823 1 58.06 ? C3D F43 603 A 1 HETATM 62 C C4D F43 . . . F 6 -24.353 8.661 4.19 1 58.64 ? C4D F43 603 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 62 #