data_5N2E # _model_server_result.job_id p1IB1CbPMw0PnhjlmUpegA _model_server_result.datetime_utc '2025-03-06 22:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1104}' # _entry.id 5N2E # _exptl.entry_id 5N2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5N2E _cell.length_a 133.415 _cell.length_b 133.415 _cell.length_c 230.525 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 5N2E _atom_sites.fract_transf_matrix[1][1] 0.007495 _atom_sites.fract_transf_matrix[1][2] 0.004327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 1101 1 MES MES . C 2 MES A 1 1102 4 MES MES . D 2 MES A 1 1103 5 MES MES . E 3 GOL A 1 1104 1 GOL GOL . F 3 GOL A 1 1105 2 GOL GOL . G 4 EPE A 1 1106 1 EPE EPE . H 5 DTT A 1 1107 1 DTT DTT . I 6 HOH A 1 1201 247 HOH HOH . I 6 HOH A 2 1202 253 HOH HOH . I 6 HOH A 3 1203 235 HOH HOH . I 6 HOH A 4 1204 101 HOH HOH . I 6 HOH A 5 1205 227 HOH HOH . I 6 HOH A 6 1206 254 HOH HOH . I 6 HOH A 7 1207 58 HOH HOH . I 6 HOH A 8 1208 203 HOH HOH . I 6 HOH A 9 1209 211 HOH HOH . I 6 HOH A 10 1210 202 HOH HOH . I 6 HOH A 11 1211 24 HOH HOH . I 6 HOH A 12 1212 224 HOH HOH . I 6 HOH A 13 1213 135 HOH HOH . I 6 HOH A 14 1214 188 HOH HOH . I 6 HOH A 15 1215 255 HOH HOH . I 6 HOH A 16 1216 42 HOH HOH . I 6 HOH A 17 1217 15 HOH HOH . I 6 HOH A 18 1218 139 HOH HOH . I 6 HOH A 19 1219 229 HOH HOH . I 6 HOH A 20 1220 160 HOH HOH . I 6 HOH A 21 1221 104 HOH HOH . I 6 HOH A 22 1222 176 HOH HOH . I 6 HOH A 23 1223 49 HOH HOH . I 6 HOH A 24 1224 248 HOH HOH . I 6 HOH A 25 1225 29 HOH HOH . I 6 HOH A 26 1226 97 HOH HOH . I 6 HOH A 27 1227 178 HOH HOH . I 6 HOH A 28 1228 177 HOH HOH . I 6 HOH A 29 1229 245 HOH HOH . I 6 HOH A 30 1230 40 HOH HOH . I 6 HOH A 31 1231 32 HOH HOH . I 6 HOH A 32 1232 27 HOH HOH . I 6 HOH A 33 1233 59 HOH HOH . I 6 HOH A 34 1234 26 HOH HOH . I 6 HOH A 35 1235 78 HOH HOH . I 6 HOH A 36 1236 25 HOH HOH . I 6 HOH A 37 1237 206 HOH HOH . I 6 HOH A 38 1238 41 HOH HOH . I 6 HOH A 39 1239 14 HOH HOH . I 6 HOH A 40 1240 155 HOH HOH . I 6 HOH A 41 1241 163 HOH HOH . I 6 HOH A 42 1242 251 HOH HOH . I 6 HOH A 43 1243 252 HOH HOH . I 6 HOH A 44 1244 216 HOH HOH . I 6 HOH A 45 1245 114 HOH HOH . I 6 HOH A 46 1246 99 HOH HOH . I 6 HOH A 47 1247 170 HOH HOH . I 6 HOH A 48 1248 236 HOH HOH . I 6 HOH A 49 1249 154 HOH HOH . I 6 HOH A 50 1250 16 HOH HOH . I 6 HOH A 51 1251 146 HOH HOH . I 6 HOH A 52 1252 38 HOH HOH . I 6 HOH A 53 1253 186 HOH HOH . I 6 HOH A 54 1254 183 HOH HOH . I 6 HOH A 55 1255 232 HOH HOH . I 6 HOH A 56 1256 157 HOH HOH . I 6 HOH A 57 1257 7 HOH HOH . I 6 HOH A 58 1258 94 HOH HOH . I 6 HOH A 59 1259 234 HOH HOH . I 6 HOH A 60 1260 193 HOH HOH . I 6 HOH A 61 1261 149 HOH HOH . I 6 HOH A 62 1262 156 HOH HOH . I 6 HOH A 63 1263 142 HOH HOH . I 6 HOH A 64 1264 30 HOH HOH . I 6 HOH A 65 1265 90 HOH HOH . I 6 HOH A 66 1266 5 HOH HOH . I 6 HOH A 67 1267 63 HOH HOH . I 6 HOH A 68 1268 112 HOH HOH . I 6 HOH A 69 1269 66 HOH HOH . I 6 HOH A 70 1270 22 HOH HOH . I 6 HOH A 71 1271 141 HOH HOH . I 6 HOH A 72 1272 197 HOH HOH . I 6 HOH A 73 1273 214 HOH HOH . I 6 HOH A 74 1274 215 HOH HOH . I 6 HOH A 75 1275 45 HOH HOH . I 6 HOH A 76 1276 207 HOH HOH . I 6 HOH A 77 1277 239 HOH HOH . I 6 HOH A 78 1278 136 HOH HOH . I 6 HOH A 79 1279 110 HOH HOH . I 6 HOH A 80 1280 201 HOH HOH . I 6 HOH A 81 1281 169 HOH HOH . I 6 HOH A 82 1282 249 HOH HOH . I 6 HOH A 83 1283 166 HOH HOH . I 6 HOH A 84 1284 233 HOH HOH . I 6 HOH A 85 1285 218 HOH HOH . I 6 HOH A 86 1286 134 HOH HOH . I 6 HOH A 87 1287 19 HOH HOH . I 6 HOH A 88 1288 93 HOH HOH . I 6 HOH A 89 1289 137 HOH HOH . I 6 HOH A 90 1290 8 HOH HOH . I 6 HOH A 91 1291 241 HOH HOH . I 6 HOH A 92 1292 10 HOH HOH . I 6 HOH A 93 1293 82 HOH HOH . I 6 HOH A 94 1294 18 HOH HOH . I 6 HOH A 95 1295 33 HOH HOH . I 6 HOH A 96 1296 223 HOH HOH . I 6 HOH A 97 1297 131 HOH HOH . I 6 HOH A 98 1298 184 HOH HOH . I 6 HOH A 99 1299 48 HOH HOH . I 6 HOH A 100 1300 88 HOH HOH . I 6 HOH A 101 1301 13 HOH HOH . I 6 HOH A 102 1302 11 HOH HOH . I 6 HOH A 103 1303 35 HOH HOH . I 6 HOH A 104 1304 23 HOH HOH . I 6 HOH A 105 1305 17 HOH HOH . I 6 HOH A 106 1306 126 HOH HOH . I 6 HOH A 107 1307 158 HOH HOH . I 6 HOH A 108 1308 3 HOH HOH . I 6 HOH A 109 1309 185 HOH HOH . I 6 HOH A 110 1310 165 HOH HOH . I 6 HOH A 111 1311 4 HOH HOH . I 6 HOH A 112 1312 12 HOH HOH . I 6 HOH A 113 1313 220 HOH HOH . I 6 HOH A 114 1314 132 HOH HOH . I 6 HOH A 115 1315 36 HOH HOH . I 6 HOH A 116 1316 189 HOH HOH . I 6 HOH A 117 1317 145 HOH HOH . I 6 HOH A 118 1318 147 HOH HOH . I 6 HOH A 119 1319 175 HOH HOH . I 6 HOH A 120 1320 85 HOH HOH . I 6 HOH A 121 1321 9 HOH HOH . I 6 HOH A 122 1322 246 HOH HOH . I 6 HOH A 123 1323 159 HOH HOH . I 6 HOH A 124 1324 162 HOH HOH . I 6 HOH A 125 1325 44 HOH HOH . I 6 HOH A 126 1326 208 HOH HOH . I 6 HOH A 127 1327 54 HOH HOH . I 6 HOH A 128 1328 28 HOH HOH . I 6 HOH A 129 1329 37 HOH HOH . I 6 HOH A 130 1330 230 HOH HOH . I 6 HOH A 131 1331 125 HOH HOH . I 6 HOH A 132 1332 20 HOH HOH . I 6 HOH A 133 1333 243 HOH HOH . I 6 HOH A 134 1334 127 HOH HOH . I 6 HOH A 135 1335 244 HOH HOH . I 6 HOH A 136 1336 123 HOH HOH . I 6 HOH A 137 1337 172 HOH HOH . I 6 HOH A 138 1338 116 HOH HOH . I 6 HOH A 139 1339 138 HOH HOH . I 6 HOH A 140 1340 64 HOH HOH . I 6 HOH A 141 1341 57 HOH HOH . I 6 HOH A 142 1342 73 HOH HOH . I 6 HOH A 143 1343 111 HOH HOH . I 6 HOH A 144 1344 77 HOH HOH . I 6 HOH A 145 1345 182 HOH HOH . I 6 HOH A 146 1346 113 HOH HOH . I 6 HOH A 147 1347 21 HOH HOH . I 6 HOH A 148 1348 150 HOH HOH . I 6 HOH A 149 1349 122 HOH HOH . I 6 HOH A 150 1350 65 HOH HOH . I 6 HOH A 151 1351 50 HOH HOH . I 6 HOH A 152 1352 102 HOH HOH . I 6 HOH A 153 1353 106 HOH HOH . I 6 HOH A 154 1354 92 HOH HOH . I 6 HOH A 155 1355 198 HOH HOH . I 6 HOH A 156 1356 180 HOH HOH . I 6 HOH A 157 1357 81 HOH HOH . I 6 HOH A 158 1358 89 HOH HOH . I 6 HOH A 159 1359 105 HOH HOH . I 6 HOH A 160 1360 195 HOH HOH . I 6 HOH A 161 1361 200 HOH HOH . I 6 HOH A 162 1362 60 HOH HOH . I 6 HOH A 163 1363 167 HOH HOH . I 6 HOH A 164 1364 151 HOH HOH . I 6 HOH A 165 1365 71 HOH HOH . I 6 HOH A 166 1366 168 HOH HOH . I 6 HOH A 167 1367 181 HOH HOH . I 6 HOH A 168 1368 174 HOH HOH . I 6 HOH A 169 1369 55 HOH HOH . I 6 HOH A 170 1370 238 HOH HOH . I 6 HOH A 171 1371 75 HOH HOH . I 6 HOH A 172 1372 56 HOH HOH . I 6 HOH A 173 1373 70 HOH HOH . I 6 HOH A 174 1374 152 HOH HOH . I 6 HOH A 175 1375 74 HOH HOH . I 6 HOH A 176 1376 86 HOH HOH . I 6 HOH A 177 1377 72 HOH HOH . I 6 HOH A 178 1378 100 HOH HOH . I 6 HOH A 179 1379 161 HOH HOH . I 6 HOH A 180 1380 226 HOH HOH . I 6 HOH A 181 1381 87 HOH HOH . I 6 HOH A 182 1382 204 HOH HOH . I 6 HOH A 183 1383 98 HOH HOH . I 6 HOH A 184 1384 62 HOH HOH . I 6 HOH A 185 1385 148 HOH HOH . I 6 HOH A 186 1386 196 HOH HOH . I 6 HOH A 187 1387 34 HOH HOH . I 6 HOH A 188 1388 84 HOH HOH . I 6 HOH A 189 1389 187 HOH HOH . I 6 HOH A 190 1390 240 HOH HOH . I 6 HOH A 191 1391 61 HOH HOH . I 6 HOH A 192 1392 153 HOH HOH . I 6 HOH A 193 1393 108 HOH HOH . I 6 HOH A 194 1394 76 HOH HOH . I 6 HOH A 195 1395 190 HOH HOH . I 6 HOH A 196 1396 225 HOH HOH . I 6 HOH A 197 1397 171 HOH HOH . I 6 HOH A 198 1398 80 HOH HOH . I 6 HOH A 199 1399 103 HOH HOH . I 6 HOH A 200 1400 231 HOH HOH . I 6 HOH A 201 1401 219 HOH HOH . I 6 HOH A 202 1402 191 HOH HOH . I 6 HOH A 203 1403 67 HOH HOH . I 6 HOH A 204 1404 83 HOH HOH . I 6 HOH A 205 1405 173 HOH HOH . I 6 HOH A 206 1406 31 HOH HOH . I 6 HOH A 207 1407 96 HOH HOH . I 6 HOH A 208 1408 69 HOH HOH . I 6 HOH A 209 1409 79 HOH HOH . I 6 HOH A 210 1410 192 HOH HOH . I 6 HOH A 211 1411 51 HOH HOH . I 6 HOH A 212 1412 121 HOH HOH . I 6 HOH A 213 1413 164 HOH HOH . I 6 HOH A 214 1414 228 HOH HOH . I 6 HOH A 215 1415 68 HOH HOH . I 6 HOH A 216 1416 213 HOH HOH . I 6 HOH A 217 1417 129 HOH HOH . I 6 HOH A 218 1418 212 HOH HOH . I 6 HOH A 219 1419 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -81.046 43.88 15.115 1 109.26 ? C1 GOL 1104 A 1 HETATM 2 O O1 GOL . . . E 3 -81.956 44.626 15.94 1 105.01 ? O1 GOL 1104 A 1 HETATM 3 C C2 GOL . . . E 3 -79.861 44.773 14.704 1 114.77 ? C2 GOL 1104 A 1 HETATM 4 O O2 GOL . . . E 3 -78.797 44.589 15.663 1 106.6 ? O2 GOL 1104 A 1 HETATM 5 C C3 GOL . . . E 3 -79.393 44.548 13.236 1 110.36 ? C3 GOL 1104 A 1 HETATM 6 O O3 GOL . . . E 3 -78.29 43.63 13.095 1 86.45 ? O3 GOL 1104 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #