data_5N2G # _model_server_result.job_id Z5zlmPiKXaNB_CmZpU1mpg _model_server_result.datetime_utc '2024-11-24 18:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1108}' # _entry.id 5N2G # _exptl.entry_id 5N2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5N2G _cell.length_a 134.007 _cell.length_b 134.007 _cell.length_c 230.189 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 170 A ASP 166 1_555 E MN MN . A MN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A OD1 ASP 170 A ASP 166 1_555 F MN MN . A MN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc3 A OE2 GLU 172 A GLU 168 1_555 E MN MN . A MN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc4 A OD2 ASP 466 A ASP 462 1_555 E MN MN . A MN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc5 A OE1 GLU 794 A GLU 790 1_555 G MN MN . A MN 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OE1 GLU 796 A GLU 792 1_555 G MN MN . A MN 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc7 A OE2 GLU 927 A GLU 923 1_555 H MN MN . A MN 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc8 E MN MN . A MN 1104 1_555 M O HOH . A HOH 1239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 F MN MN . A MN 1105 1_555 M O HOH . A HOH 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 5N2G _atom_sites.fract_transf_matrix[1][1] 0.007462 _atom_sites.fract_transf_matrix[1][2] 0.004308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 1101 1 MES MES . C 2 MES A 1 1102 4 MES MES . D 2 MES A 1 1103 5 MES MES . E 3 MN A 1 1104 11 MN MN . F 3 MN A 1 1105 12 MN MN . G 3 MN A 1 1106 14 MN MN . H 3 MN A 1 1107 15 MN MN . I 4 GOL A 1 1108 7 GOL GOL . J 4 GOL A 1 1109 8 GOL GOL . K 5 DTT A 1 1110 6 DTT DTT . L 6 EPE A 1 1111 9 EPE EPE . M 7 HOH A 1 1201 247 HOH HOH . M 7 HOH A 2 1202 253 HOH HOH . M 7 HOH A 3 1203 59 HOH HOH . M 7 HOH A 4 1204 104 HOH HOH . M 7 HOH A 5 1205 97 HOH HOH . M 7 HOH A 6 1206 235 HOH HOH . M 7 HOH A 7 1207 5 HOH HOH . M 7 HOH A 8 1208 178 HOH HOH . M 7 HOH A 9 1209 177 HOH HOH . M 7 HOH A 10 1210 161 HOH HOH . M 7 HOH A 11 1211 29 HOH HOH . M 7 HOH A 12 1212 32 HOH HOH . M 7 HOH A 13 1213 254 HOH HOH . M 7 HOH A 14 1214 155 HOH HOH . M 7 HOH A 15 1215 176 HOH HOH . M 7 HOH A 16 1216 16 HOH HOH . M 7 HOH A 17 1217 227 HOH HOH . M 7 HOH A 18 1218 42 HOH HOH . M 7 HOH A 19 1219 58 HOH HOH . M 7 HOH A 20 1220 101 HOH HOH . M 7 HOH A 21 1221 90 HOH HOH . M 7 HOH A 22 1222 211 HOH HOH . M 7 HOH A 23 1223 27 HOH HOH . M 7 HOH A 24 1224 197 HOH HOH . M 7 HOH A 25 1225 163 HOH HOH . M 7 HOH A 26 1226 135 HOH HOH . M 7 HOH A 27 1227 47 HOH HOH . M 7 HOH A 28 1228 229 HOH HOH . M 7 HOH A 29 1229 156 HOH HOH . M 7 HOH A 30 1230 110 HOH HOH . M 7 HOH A 31 1231 154 HOH HOH . M 7 HOH A 32 1232 24 HOH HOH . M 7 HOH A 33 1233 49 HOH HOH . M 7 HOH A 34 1234 251 HOH HOH . M 7 HOH A 35 1235 14 HOH HOH . M 7 HOH A 36 1236 157 HOH HOH . M 7 HOH A 37 1237 202 HOH HOH . M 7 HOH A 38 1238 112 HOH HOH . M 7 HOH A 39 1239 2 HOH HOH . M 7 HOH A 40 1240 203 HOH HOH . M 7 HOH A 41 1241 139 HOH HOH . M 7 HOH A 42 1242 207 HOH HOH . M 7 HOH A 43 1243 134 HOH HOH . M 7 HOH A 44 1244 26 HOH HOH . M 7 HOH A 45 1245 245 HOH HOH . M 7 HOH A 46 1246 99 HOH HOH . M 7 HOH A 47 1247 41 HOH HOH . M 7 HOH A 48 1248 160 HOH HOH . M 7 HOH A 49 1249 78 HOH HOH . M 7 HOH A 50 1250 63 HOH HOH . M 7 HOH A 51 1251 18 HOH HOH . M 7 HOH A 52 1252 30 HOH HOH . M 7 HOH A 53 1253 224 HOH HOH . M 7 HOH A 54 1254 82 HOH HOH . M 7 HOH A 55 1255 38 HOH HOH . M 7 HOH A 56 1256 103 HOH HOH . M 7 HOH A 57 1257 22 HOH HOH . M 7 HOH A 58 1258 214 HOH HOH . M 7 HOH A 59 1259 208 HOH HOH . M 7 HOH A 60 1260 239 HOH HOH . M 7 HOH A 61 1261 114 HOH HOH . M 7 HOH A 62 1262 186 HOH HOH . M 7 HOH A 63 1263 216 HOH HOH . M 7 HOH A 64 1264 25 HOH HOH . M 7 HOH A 65 1265 15 HOH HOH . M 7 HOH A 66 1266 66 HOH HOH . M 7 HOH A 67 1267 7 HOH HOH . M 7 HOH A 68 1268 11 HOH HOH . M 7 HOH A 69 1269 218 HOH HOH . M 7 HOH A 70 1270 131 HOH HOH . M 7 HOH A 71 1271 241 HOH HOH . M 7 HOH A 72 1272 40 HOH HOH . M 7 HOH A 73 1273 248 HOH HOH . M 7 HOH A 74 1274 184 HOH HOH . M 7 HOH A 75 1275 142 HOH HOH . M 7 HOH A 76 1276 236 HOH HOH . M 7 HOH A 77 1277 35 HOH HOH . M 7 HOH A 78 1278 206 HOH HOH . M 7 HOH A 79 1279 170 HOH HOH . M 7 HOH A 80 1280 158 HOH HOH . M 7 HOH A 81 1281 88 HOH HOH . M 7 HOH A 82 1282 17 HOH HOH . M 7 HOH A 83 1283 141 HOH HOH . M 7 HOH A 84 1284 44 HOH HOH . M 7 HOH A 85 1285 193 HOH HOH . M 7 HOH A 86 1286 252 HOH HOH . M 7 HOH A 87 1287 125 HOH HOH . M 7 HOH A 88 1288 145 HOH HOH . M 7 HOH A 89 1289 127 HOH HOH . M 7 HOH A 90 1290 137 HOH HOH . M 7 HOH A 91 1291 37 HOH HOH . M 7 HOH A 92 1292 233 HOH HOH . M 7 HOH A 93 1293 183 HOH HOH . M 7 HOH A 94 1294 8 HOH HOH . M 7 HOH A 95 1295 10 HOH HOH . M 7 HOH A 96 1296 230 HOH HOH . M 7 HOH A 97 1297 215 HOH HOH . M 7 HOH A 98 1298 220 HOH HOH . M 7 HOH A 99 1299 201 HOH HOH . M 7 HOH A 100 1300 13 HOH HOH . M 7 HOH A 101 1301 20 HOH HOH . M 7 HOH A 102 1302 94 HOH HOH . M 7 HOH A 103 1303 23 HOH HOH . M 7 HOH A 104 1304 45 HOH HOH . M 7 HOH A 105 1305 182 HOH HOH . M 7 HOH A 106 1306 234 HOH HOH . M 7 HOH A 107 1307 223 HOH HOH . M 7 HOH A 108 1308 232 HOH HOH . M 7 HOH A 109 1309 169 HOH HOH . M 7 HOH A 110 1310 189 HOH HOH . M 7 HOH A 111 1311 166 HOH HOH . M 7 HOH A 112 1312 165 HOH HOH . M 7 HOH A 113 1313 185 HOH HOH . M 7 HOH A 114 1314 33 HOH HOH . M 7 HOH A 115 1315 126 HOH HOH . M 7 HOH A 116 1316 150 HOH HOH . M 7 HOH A 117 1317 159 HOH HOH . M 7 HOH A 118 1318 50 HOH HOH . M 7 HOH A 119 1319 105 HOH HOH . M 7 HOH A 120 1320 54 HOH HOH . M 7 HOH A 121 1321 243 HOH HOH . M 7 HOH A 122 1322 12 HOH HOH . M 7 HOH A 123 1323 162 HOH HOH . M 7 HOH A 124 1324 36 HOH HOH . M 7 HOH A 125 1325 136 HOH HOH . M 7 HOH A 126 1326 56 HOH HOH . M 7 HOH A 127 1327 180 HOH HOH . M 7 HOH A 128 1328 132 HOH HOH . M 7 HOH A 129 1329 48 HOH HOH . M 7 HOH A 130 1330 108 HOH HOH . M 7 HOH A 131 1331 149 HOH HOH . M 7 HOH A 132 1332 172 HOH HOH . M 7 HOH A 133 1333 28 HOH HOH . M 7 HOH A 134 1334 123 HOH HOH . M 7 HOH A 135 1335 9 HOH HOH . M 7 HOH A 136 1336 188 HOH HOH . M 7 HOH A 137 1337 64 HOH HOH . M 7 HOH A 138 1338 195 HOH HOH . M 7 HOH A 139 1339 3 HOH HOH . M 7 HOH A 140 1340 174 HOH HOH . M 7 HOH A 141 1341 34 HOH HOH . M 7 HOH A 142 1342 175 HOH HOH . M 7 HOH A 143 1343 71 HOH HOH . M 7 HOH A 144 1344 102 HOH HOH . M 7 HOH A 145 1345 4 HOH HOH . M 7 HOH A 146 1346 98 HOH HOH . M 7 HOH A 147 1347 21 HOH HOH . M 7 HOH A 148 1348 92 HOH HOH . M 7 HOH A 149 1349 85 HOH HOH . M 7 HOH A 150 1350 70 HOH HOH . M 7 HOH A 151 1351 113 HOH HOH . M 7 HOH A 152 1352 72 HOH HOH . M 7 HOH A 153 1353 116 HOH HOH . M 7 HOH A 154 1354 57 HOH HOH . M 7 HOH A 155 1355 106 HOH HOH . M 7 HOH A 156 1356 111 HOH HOH . M 7 HOH A 157 1357 74 HOH HOH . M 7 HOH A 158 1358 167 HOH HOH . M 7 HOH A 159 1359 77 HOH HOH . M 7 HOH A 160 1360 151 HOH HOH . M 7 HOH A 161 1361 76 HOH HOH . M 7 HOH A 162 1362 65 HOH HOH . M 7 HOH A 163 1363 198 HOH HOH . M 7 HOH A 164 1364 93 HOH HOH . M 7 HOH A 165 1365 122 HOH HOH . M 7 HOH A 166 1366 75 HOH HOH . M 7 HOH A 167 1367 138 HOH HOH . M 7 HOH A 168 1368 219 HOH HOH . M 7 HOH A 169 1369 89 HOH HOH . M 7 HOH A 170 1370 86 HOH HOH . M 7 HOH A 171 1371 246 HOH HOH . M 7 HOH A 172 1372 226 HOH HOH . M 7 HOH A 173 1373 87 HOH HOH . M 7 HOH A 174 1374 81 HOH HOH . M 7 HOH A 175 1375 19 HOH HOH . M 7 HOH A 176 1376 152 HOH HOH . M 7 HOH A 177 1377 171 HOH HOH . M 7 HOH A 178 1378 187 HOH HOH . M 7 HOH A 179 1379 181 HOH HOH . M 7 HOH A 180 1380 168 HOH HOH . M 7 HOH A 181 1381 231 HOH HOH . M 7 HOH A 182 1382 100 HOH HOH . M 7 HOH A 183 1383 190 HOH HOH . M 7 HOH A 184 1384 96 HOH HOH . M 7 HOH A 185 1385 191 HOH HOH . M 7 HOH A 186 1386 55 HOH HOH . M 7 HOH A 187 1387 200 HOH HOH . M 7 HOH A 188 1388 196 HOH HOH . M 7 HOH A 189 1389 204 HOH HOH . M 7 HOH A 190 1390 238 HOH HOH . M 7 HOH A 191 1391 240 HOH HOH . M 7 HOH A 192 1392 225 HOH HOH . M 7 HOH A 193 1393 80 HOH HOH . M 7 HOH A 194 1394 62 HOH HOH . M 7 HOH A 195 1395 67 HOH HOH . M 7 HOH A 196 1396 84 HOH HOH . M 7 HOH A 197 1397 79 HOH HOH . M 7 HOH A 198 1398 69 HOH HOH . M 7 HOH A 199 1399 173 HOH HOH . M 7 HOH A 200 1400 255 HOH HOH . M 7 HOH A 201 1401 61 HOH HOH . M 7 HOH A 202 1402 153 HOH HOH . M 7 HOH A 203 1403 60 HOH HOH . M 7 HOH A 204 1404 121 HOH HOH . M 7 HOH A 205 1405 192 HOH HOH . M 7 HOH A 206 1406 68 HOH HOH . M 7 HOH A 207 1407 83 HOH HOH . M 7 HOH A 208 1408 73 HOH HOH . M 7 HOH A 209 1409 51 HOH HOH . M 7 HOH A 210 1410 228 HOH HOH . M 7 HOH A 211 1411 129 HOH HOH . M 7 HOH A 212 1412 31 HOH HOH . M 7 HOH A 213 1413 212 HOH HOH . M 7 HOH A 214 1414 213 HOH HOH . M 7 HOH A 215 1415 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -81.392 44.092 14.707 1 115.61 ? C1 GOL 1108 A 1 HETATM 2 O O1 GOL . . . I 4 -82.236 44.453 15.807 1 115.35 ? O1 GOL 1108 A 1 HETATM 3 C C2 GOL . . . I 4 -80.231 45.086 14.624 1 116.04 ? C2 GOL 1108 A 1 HETATM 4 O O2 GOL . . . I 4 -79.261 44.745 15.629 1 103.83 ? O2 GOL 1108 A 1 HETATM 5 C C3 GOL . . . I 4 -79.614 45.121 13.209 1 114.24 ? C3 GOL 1108 A 1 HETATM 6 O O3 GOL . . . I 4 -78.747 44.009 12.933 1 102.03 ? O3 GOL 1108 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #