data_5N2Q # _model_server_result.job_id Uvz8ygkDCEg9m5OvjbTXNQ _model_server_result.datetime_utc '2024-10-10 07:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5N2Q # _exptl.entry_id 5N2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.88 _cell.angle_gamma 90 _cell.entry_id 5N2Q _cell.length_a 43.576 _cell.length_b 52.853 _cell.length_c 56.035 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 2 A TYR 3 1_555 A N MSE 3 A MSE 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TYR 2 A TYR 3 1_555 A N MSE 3 A MSE 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C MSE 3 A MSE 4 1_555 A N VAL 4 A VAL 5 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 3 A MSE 4 1_555 A N VAL 4 A VAL 5 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C ARG 6 A ARG 7 1_555 A N MSE 7 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 7 A MSE 8 1_555 A N GLN 8 A GLN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C LYS 9 A LYS 10 1_555 A N MSE 10 A MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 A C MSE 10 A MSE 11 1_555 A N LYS 11 A LYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O PHE 91 A PHE 92 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A O LEU 94 A LEU 95 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? covale ? covale9 A C HIS 132 A HIS 133 1_555 A N MSE 133 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 133 A MSE 134 1_555 A N HIS 134 A HIS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 A C HIS 134 A HIS 135 1_555 A N MSE 135 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 135 A MSE 136 1_555 A N GLY 136 A GLY 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale13 A C ALA 149 A ALA 150 1_555 A N MSE 150 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale14 A C MSE 150 A MSE 151 1_555 A N PHE 151 A PHE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale15 A C TYR 166 A TYR 167 1_555 A N MSE 167 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 A C MSE 167 A MSE 168 1_555 A N SER 168 A SER 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc3 B OP2 DC 2 B DC 2 1_555 F NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 D MG MG . A MG 202 1_555 G O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 F NA NA . B NA 102 1_555 H O HOH . B HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc6 F NA NA . B NA 102 1_555 H O HOH . B HOH 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 B DA 1 1_555 B N3 DT 18 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 B DA 1 1_555 B O4 DT 18 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DC 2 B DC 2 1_555 B N1 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 DC 2 B DC 2 1_555 B O6 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 DC 2 B DC 2 1_555 B N2 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 3 B DT 3 1_555 B N1 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 3 B DT 3 1_555 B N6 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 4 B DT 4 1_555 B N1 DA 15 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 4 B DT 4 1_555 B N6 DA 15 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 5 B DT 5 1_555 B N1 DA 14 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 5 B DT 5 1_555 B N6 DA 14 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 6 B DA 6 1_555 B N3 DT 13 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 6 B DA 6 1_555 B O4 DT 13 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 7 B DT 7 1_555 B N1 DA 12 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 7 B DT 7 1_555 B N6 DA 12 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 5N2Q _atom_sites.fract_transf_matrix[1][1] 0.022949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002363 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 201 1 CL CL . D 4 MG A 1 202 1 MG MG . E 5 GOL B 1 101 1 GOL GOL . F 6 NA B 1 102 1 NA NA . G 7 HOH A 1 301 90 HOH HOH . G 7 HOH A 2 302 157 HOH HOH . G 7 HOH A 3 303 59 HOH HOH . G 7 HOH A 4 304 124 HOH HOH . G 7 HOH A 5 305 100 HOH HOH . G 7 HOH A 6 306 88 HOH HOH . G 7 HOH A 7 307 91 HOH HOH . G 7 HOH A 8 308 180 HOH HOH . G 7 HOH A 9 309 68 HOH HOH . G 7 HOH A 10 310 161 HOH HOH . G 7 HOH A 11 311 117 HOH HOH . G 7 HOH A 12 312 181 HOH HOH . G 7 HOH A 13 313 126 HOH HOH . G 7 HOH A 14 314 25 HOH HOH . G 7 HOH A 15 315 136 HOH HOH . G 7 HOH A 16 316 12 HOH HOH . G 7 HOH A 17 317 192 HOH HOH . G 7 HOH A 18 318 170 HOH HOH . G 7 HOH A 19 319 51 HOH HOH . G 7 HOH A 20 320 118 HOH HOH . G 7 HOH A 21 321 114 HOH HOH . G 7 HOH A 22 322 101 HOH HOH . G 7 HOH A 23 323 8 HOH HOH . G 7 HOH A 24 324 104 HOH HOH . G 7 HOH A 25 325 190 HOH HOH . G 7 HOH A 26 326 175 HOH HOH . G 7 HOH A 27 327 27 HOH HOH . G 7 HOH A 28 328 33 HOH HOH . G 7 HOH A 29 329 40 HOH HOH . G 7 HOH A 30 330 35 HOH HOH . G 7 HOH A 31 331 166 HOH HOH . G 7 HOH A 32 332 121 HOH HOH . G 7 HOH A 33 333 7 HOH HOH . G 7 HOH A 34 334 52 HOH HOH . G 7 HOH A 35 335 10 HOH HOH . G 7 HOH A 36 336 182 HOH HOH . G 7 HOH A 37 337 73 HOH HOH . G 7 HOH A 38 338 151 HOH HOH . G 7 HOH A 39 339 54 HOH HOH . G 7 HOH A 40 340 103 HOH HOH . G 7 HOH A 41 341 176 HOH HOH . G 7 HOH A 42 342 164 HOH HOH . G 7 HOH A 43 343 58 HOH HOH . G 7 HOH A 44 344 193 HOH HOH . G 7 HOH A 45 345 16 HOH HOH . G 7 HOH A 46 346 188 HOH HOH . G 7 HOH A 47 347 70 HOH HOH . G 7 HOH A 48 348 53 HOH HOH . G 7 HOH A 49 349 26 HOH HOH . G 7 HOH A 50 350 57 HOH HOH . G 7 HOH A 51 351 31 HOH HOH . G 7 HOH A 52 352 13 HOH HOH . G 7 HOH A 53 353 3 HOH HOH . G 7 HOH A 54 354 6 HOH HOH . G 7 HOH A 55 355 196 HOH HOH . G 7 HOH A 56 356 150 HOH HOH . G 7 HOH A 57 357 123 HOH HOH . G 7 HOH A 58 358 152 HOH HOH . G 7 HOH A 59 359 76 HOH HOH . G 7 HOH A 60 360 102 HOH HOH . G 7 HOH A 61 361 195 HOH HOH . G 7 HOH A 62 362 78 HOH HOH . G 7 HOH A 63 363 14 HOH HOH . G 7 HOH A 64 364 168 HOH HOH . G 7 HOH A 65 365 130 HOH HOH . G 7 HOH A 66 366 120 HOH HOH . G 7 HOH A 67 367 113 HOH HOH . G 7 HOH A 68 368 127 HOH HOH . G 7 HOH A 69 369 171 HOH HOH . G 7 HOH A 70 370 106 HOH HOH . G 7 HOH A 71 371 65 HOH HOH . G 7 HOH A 72 372 62 HOH HOH . G 7 HOH A 73 373 147 HOH HOH . G 7 HOH A 74 374 128 HOH HOH . G 7 HOH A 75 375 110 HOH HOH . G 7 HOH A 76 376 111 HOH HOH . G 7 HOH A 77 377 169 HOH HOH . G 7 HOH A 78 378 160 HOH HOH . G 7 HOH A 79 379 41 HOH HOH . G 7 HOH A 80 380 167 HOH HOH . G 7 HOH A 81 381 105 HOH HOH . G 7 HOH A 82 382 109 HOH HOH . G 7 HOH A 83 383 95 HOH HOH . G 7 HOH A 84 384 30 HOH HOH . G 7 HOH A 85 385 179 HOH HOH . G 7 HOH A 86 386 63 HOH HOH . G 7 HOH A 87 387 191 HOH HOH . G 7 HOH A 88 388 187 HOH HOH . G 7 HOH A 89 389 99 HOH HOH . G 7 HOH A 90 390 137 HOH HOH . G 7 HOH A 91 391 116 HOH HOH . G 7 HOH A 92 392 19 HOH HOH . G 7 HOH A 93 393 148 HOH HOH . G 7 HOH A 94 394 69 HOH HOH . G 7 HOH A 95 395 153 HOH HOH . G 7 HOH A 96 396 94 HOH HOH . H 7 HOH B 1 201 140 HOH HOH . H 7 HOH B 2 202 156 HOH HOH . H 7 HOH B 3 203 183 HOH HOH . H 7 HOH B 4 204 2 HOH HOH . H 7 HOH B 5 205 21 HOH HOH . H 7 HOH B 6 206 112 HOH HOH . H 7 HOH B 7 207 66 HOH HOH . H 7 HOH B 8 208 119 HOH HOH . H 7 HOH B 9 209 29 HOH HOH . H 7 HOH B 10 210 133 HOH HOH . H 7 HOH B 11 211 165 HOH HOH . H 7 HOH B 12 212 141 HOH HOH . H 7 HOH B 13 213 72 HOH HOH . H 7 HOH B 14 214 172 HOH HOH . H 7 HOH B 15 215 138 HOH HOH . H 7 HOH B 16 216 145 HOH HOH . H 7 HOH B 17 217 115 HOH HOH . H 7 HOH B 18 218 32 HOH HOH . H 7 HOH B 19 219 146 HOH HOH . H 7 HOH B 20 220 82 HOH HOH . H 7 HOH B 21 221 43 HOH HOH . H 7 HOH B 22 222 45 HOH HOH . H 7 HOH B 23 223 55 HOH HOH . H 7 HOH B 24 224 184 HOH HOH . H 7 HOH B 25 225 15 HOH HOH . H 7 HOH B 26 226 9 HOH HOH . H 7 HOH B 27 227 71 HOH HOH . H 7 HOH B 28 228 39 HOH HOH . H 7 HOH B 29 229 34 HOH HOH . H 7 HOH B 30 230 4 HOH HOH . H 7 HOH B 31 231 125 HOH HOH . H 7 HOH B 32 232 56 HOH HOH . H 7 HOH B 33 233 155 HOH HOH . H 7 HOH B 34 234 174 HOH HOH . H 7 HOH B 35 235 67 HOH HOH . H 7 HOH B 36 236 24 HOH HOH . H 7 HOH B 37 237 83 HOH HOH . H 7 HOH B 38 238 47 HOH HOH . H 7 HOH B 39 239 5 HOH HOH . H 7 HOH B 40 240 189 HOH HOH . H 7 HOH B 41 241 122 HOH HOH . H 7 HOH B 42 242 144 HOH HOH . H 7 HOH B 43 243 143 HOH HOH . H 7 HOH B 44 244 11 HOH HOH . H 7 HOH B 45 245 18 HOH HOH . H 7 HOH B 46 246 142 HOH HOH . H 7 HOH B 47 247 46 HOH HOH . H 7 HOH B 48 248 186 HOH HOH . H 7 HOH B 49 249 154 HOH HOH . H 7 HOH B 50 250 131 HOH HOH . H 7 HOH B 51 251 93 HOH HOH . H 7 HOH B 52 252 108 HOH HOH . H 7 HOH B 53 253 139 HOH HOH . H 7 HOH B 54 254 159 HOH HOH . H 7 HOH B 55 255 185 HOH HOH . H 7 HOH B 56 256 107 HOH HOH . H 7 HOH B 57 257 194 HOH HOH . H 7 HOH B 58 258 149 HOH HOH . H 7 HOH B 59 259 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 3.901 -18.848 12.695 1 51.84 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . E 5 4.631 -19.542 11.712 1 54.95 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . E 5 2.434 -19.307 12.704 1 50.98 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . E 5 2.32 -20.706 12.583 1 51.48 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . E 5 1.639 -18.732 11.544 1 50.79 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . E 5 0.266 -18.87 11.873 1 49.02 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #