data_5N2R
#
_model_server_result.job_id            p3F1AU47hZjelXnIqb_mfA 
_model_server_result.datetime_utc      '2024-11-16 23:44:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":2427}' 
#
_entry.id    5N2R 
#
_exptl.entry_id    5N2R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N2R 
_cell.length_a            39.254 
_cell.length_b            180.739 
_cell.length_c            140.641 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 BA N N 
? 6 CA N N 
? 6 DA N N 
? 6 EA N N 
? 6 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc3 B NA NA . A NA 2400 1_555 HA O HOH . A HOH 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc4 B NA NA . A NA 2400 1_555 HA O HOH . A HOH 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 427 n n 
C10 C9 OLC doub 428 n n 
C10 C11 OLC sing 429 n n 
C9 C8 OLC sing 430 n n 
C17 C16 OLC sing 431 z n 
C11 C12 OLC sing 432 n n 
C8 C7 OLC sing 433 n n 
C24 C22 OLC sing 434 n n 
C24 O25 OLC sing 435 n n 
C16 C15 OLC sing 436 n n 
C12 C13 OLC sing 437 n n 
C7 C6 OLC sing 438 n n 
C15 C14 OLC sing 439 n n 
C13 C14 OLC sing 440 n n 
C6 C5 OLC sing 441 n n 
C5 C4 OLC sing 442 n n 
C4 C3 OLC sing 443 n n 
C3 C2 OLC sing 444 n n 
C2 C1 OLC sing 445 n n 
C21 C22 OLC sing 446 n n 
C21 O20 OLC sing 447 n n 
C1 O19 OLC doub 448 n n 
C1 O20 OLC sing 449 n n 
C22 O23 OLC sing 450 n n 
C18 H18 OLC sing 451 n n 
C18 H18A OLC sing 452 n n 
C18 H18B OLC sing 453 n n 
C10 H10 OLC sing 454 n n 
C9 H9 OLC sing 455 n n 
C17 H17 OLC sing 456 n n 
C17 H17A OLC sing 457 n n 
C11 H11 OLC sing 458 n n 
C11 H11A OLC sing 459 n n 
C8 H8 OLC sing 460 n n 
C8 H8A OLC sing 461 n n 
C24 H24 OLC sing 462 n n 
C24 H24A OLC sing 463 n n 
C16 H16 OLC sing 464 n n 
C16 H16A OLC sing 465 n n 
C12 H12 OLC sing 466 n n 
C12 H12A OLC sing 467 n n 
C7 H7 OLC sing 468 n n 
C7 H7A OLC sing 469 n n 
C15 H15 OLC sing 470 n n 
C15 H15A OLC sing 471 n n 
C13 H13 OLC sing 472 n n 
C13 H13A OLC sing 473 n n 
C6 H6 OLC sing 474 n n 
C6 H6A OLC sing 475 n n 
C14 H14 OLC sing 476 n n 
C14 H14A OLC sing 477 n n 
C5 H5 OLC sing 478 n n 
C5 H5A OLC sing 479 n n 
C4 H4 OLC sing 480 n n 
C4 H4A OLC sing 481 n n 
C3 H3 OLC sing 482 n n 
C3 H3A OLC sing 483 n n 
C2 H2 OLC sing 484 n n 
C2 H2A OLC sing 485 n n 
C21 H21 OLC sing 486 n n 
C21 H21A OLC sing 487 n n 
C22 H22 OLC sing 488 n n 
O25 HO25 OLC sing 489 n n 
O23 HO23 OLC sing 490 n n 
#
_atom_sites.entry_id                     5N2R 
_atom_sites.fract_transf_matrix[1][1]    0.025475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005533 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 2400 2400 NA NA . 
C 3 8JN A 1 2401 2401 8JN PSB . 
D 4 CLR A 1 2402 2402 CLR CLR . 
E 4 CLR A 1 2403 2403 CLR CLR . 
F 4 CLR A 1 2404 2404 CLR CLR . 
G 5 OLA A 1 2405 2405 OLA OLA . 
H 5 OLA A 1 2406 2406 OLA OLA . 
I 5 OLA A 1 2407 2407 OLA OLA . 
J 5 OLA A 1 2408 2408 OLA OLA . 
K 5 OLA A 1 2409 2409 OLA OLA . 
L 5 OLA A 1 2410 2410 OLA OLA . 
M 5 OLA A 1 2411 2411 OLA OLA . 
N 5 OLA A 1 2412 2412 OLA OLA . 
O 5 OLA A 1 2413 2413 OLA OLA . 
P 5 OLA A 1 2414 2414 OLA OLA . 
Q 5 OLA A 1 2415 2415 OLA OLA . 
R 5 OLA A 1 2416 2416 OLA OLA . 
S 5 OLA A 1 2417 2417 OLA OLA . 
T 5 OLA A 1 2418 2418 OLA OLA . 
U 5 OLA A 1 2419 2419 OLA OLA . 
V 5 OLA A 1 2420 2420 OLA OLA . 
W 5 OLA A 1 2421 2421 OLA OLA . 
X 5 OLA A 1 2422 2422 OLA OLA . 
Y 5 OLA A 1 2423 2423 OLA OLA . 
Z 5 OLA A 1 2424 2424 OLA OLA . 
AA 5 OLA A 1 2425 2425 OLA OLA . 
BA 6 OLC A 1 2426 2426 OLC OLC . 
CA 6 OLC A 1 2427 2427 OLC OLC . 
DA 6 OLC A 1 2428 2428 OLC OLC . 
EA 6 OLC A 1 2429 2429 OLC OLC . 
FA 6 OLC A 1 2430 2430 OLC OLC . 
GA 7 TAR A 1 2431 2431 TAR TAR . 
HA 8 HOH A 1 2501 16 HOH HOH . 
HA 8 HOH A 2 2502 10 HOH HOH . 
HA 8 HOH A 3 2503 32 HOH HOH . 
HA 8 HOH A 4 2504 29 HOH HOH . 
HA 8 HOH A 5 2505 3 HOH HOH . 
HA 8 HOH A 6 2506 12 HOH HOH . 
HA 8 HOH A 7 2507 14 HOH HOH . 
HA 8 HOH A 8 2508 30 HOH HOH . 
HA 8 HOH A 9 2509 1 HOH HOH . 
HA 8 HOH A 10 2510 17 HOH HOH . 
HA 8 HOH A 11 2511 25 HOH HOH . 
HA 8 HOH A 12 2512 7 HOH HOH . 
HA 8 HOH A 13 2513 11 HOH HOH . 
HA 8 HOH A 14 2514 20 HOH HOH . 
HA 8 HOH A 15 2515 22 HOH HOH . 
HA 8 HOH A 16 2516 34 HOH HOH . 
HA 8 HOH A 17 2517 4 HOH HOH . 
HA 8 HOH A 18 2518 13 HOH HOH . 
HA 8 HOH A 19 2519 31 HOH HOH . 
HA 8 HOH A 20 2520 26 HOH HOH . 
HA 8 HOH A 21 2521 18 HOH HOH . 
HA 8 HOH A 22 2522 15 HOH HOH . 
HA 8 HOH A 23 2523 27 HOH HOH . 
HA 8 HOH A 24 2524 37 HOH HOH . 
HA 8 HOH A 25 2525 28 HOH HOH . 
HA 8 HOH A 26 2526 9 HOH HOH . 
HA 8 HOH A 27 2527 36 HOH HOH . 
HA 8 HOH A 28 2528 2 HOH HOH . 
HA 8 HOH A 29 2529 8 HOH HOH . 
HA 8 HOH A 30 2530 23 HOH HOH . 
HA 8 HOH A 31 2531 5 HOH HOH . 
HA 8 HOH A 32 2532 21 HOH HOH . 
HA 8 HOH A 33 2533 35 HOH HOH . 
HA 8 HOH A 34 2534 19 HOH HOH . 
HA 8 HOH A 35 2535 24 HOH HOH . 
HA 8 HOH A 36 2536 33 HOH HOH . 
HA 8 HOH A 37 2537 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . CA 6 5.495 181.813 28.915 1 91.42 ? C10 OLC 2427 A 1 
HETATM 2 C C9 OLC . . . CA 6 4.78 180.675 28.952 1 87.32 ? C9 OLC 2427 A 1 
HETATM 3 C C11 OLC . . . CA 6 5.598 182.809 27.798 1 78.4 ? C11 OLC 2427 A 1 
HETATM 4 C C8 OLC . . . CA 6 4.684 179.688 30.083 1 73.05 ? C8 OLC 2427 A 1 
HETATM 5 C C24 OLC . . . CA 6 6.177 168.283 27.892 1 87.64 ? C24 OLC 2427 A 1 
HETATM 6 C C12 OLC . . . CA 6 6.118 184.216 28.177 1 70.82 ? C12 OLC 2427 A 1 
HETATM 7 C C7 OLC . . . CA 6 3.824 178.423 29.843 1 71.46 ? C7 OLC 2427 A 1 
HETATM 8 C C13 OLC . . . CA 6 5.352 185.384 27.502 1 73.7 ? C13 OLC 2427 A 1 
HETATM 9 C C6 OLC . . . CA 6 4.455 177.101 30.33 1 79.42 ? C6 OLC 2427 A 1 
HETATM 10 C C5 OLC . . . CA 6 3.835 175.812 29.71 1 75.47 ? C5 OLC 2427 A 1 
HETATM 11 C C4 OLC . . . CA 6 2.978 174.966 30.683 1 74.32 ? C4 OLC 2427 A 1 
HETATM 12 C C3 OLC . . . CA 6 2.966 173.472 30.35 1 71.1 ? C3 OLC 2427 A 1 
HETATM 13 C C2 OLC . . . CA 6 3.737 172.591 31.351 1 84.44 ? C2 OLC 2427 A 1 
HETATM 14 C C21 OLC . . . CA 6 5.169 170.186 29.176 1 102.69 ? C21 OLC 2427 A 1 
HETATM 15 C C1 OLC . . . CA 6 3.806 171.176 30.817 1 92.85 ? C1 OLC 2427 A 1 
HETATM 16 C C22 OLC . . . CA 6 5.839 168.8 29.313 1 94.98 ? C22 OLC 2427 A 1 
HETATM 17 O O19 OLC . . . CA 6 2.862 170.422 30.654 1 94.65 ? O19 OLC 2427 A 1 
HETATM 18 O O25 OLC . . . CA 6 7.338 167.52 28.079 1 87.06 ? O25 OLC 2427 A 1 
HETATM 19 O O23 OLC . . . CA 6 7.026 168.984 30.022 1 98.35 ? O23 OLC 2427 A 1 
HETATM 20 O O20 OLC . . . CA 6 5.059 170.737 30.483 1 101.64 ? O20 OLC 2427 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#