data_5N2R # _model_server_result.job_id 4GhPnIODXCEhD4gzAmjp0w _model_server_result.datetime_utc '2024-11-16 23:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":2431}' # _entry.id 5N2R # _exptl.entry_id 5N2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N2R _cell.length_a 39.254 _cell.length_b 180.739 _cell.length_c 140.641 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id GA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 B NA NA . A NA 2400 1_555 HA O HOH . A HOH 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 B NA NA . A NA 2400 1_555 HA O HOH . A HOH 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 544 n n O11 C1 TAR sing 545 n n O11 HO1 TAR sing 546 n n C1 C2 TAR sing 547 n n C2 O2 TAR sing 548 n n C2 C3 TAR sing 549 n n C2 H2 TAR sing 550 n n O2 HO2 TAR sing 551 n n C3 O3 TAR sing 552 n n C3 C4 TAR sing 553 n n C3 H3 TAR sing 554 n n O3 HO3 TAR sing 555 n n C4 O4 TAR doub 556 n n C4 O41 TAR sing 557 n n O41 HO4 TAR sing 558 n n # _atom_sites.entry_id 5N2R _atom_sites.fract_transf_matrix[1][1] 0.025475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2400 2400 NA NA . C 3 8JN A 1 2401 2401 8JN PSB . D 4 CLR A 1 2402 2402 CLR CLR . E 4 CLR A 1 2403 2403 CLR CLR . F 4 CLR A 1 2404 2404 CLR CLR . G 5 OLA A 1 2405 2405 OLA OLA . H 5 OLA A 1 2406 2406 OLA OLA . I 5 OLA A 1 2407 2407 OLA OLA . J 5 OLA A 1 2408 2408 OLA OLA . K 5 OLA A 1 2409 2409 OLA OLA . L 5 OLA A 1 2410 2410 OLA OLA . M 5 OLA A 1 2411 2411 OLA OLA . N 5 OLA A 1 2412 2412 OLA OLA . O 5 OLA A 1 2413 2413 OLA OLA . P 5 OLA A 1 2414 2414 OLA OLA . Q 5 OLA A 1 2415 2415 OLA OLA . R 5 OLA A 1 2416 2416 OLA OLA . S 5 OLA A 1 2417 2417 OLA OLA . T 5 OLA A 1 2418 2418 OLA OLA . U 5 OLA A 1 2419 2419 OLA OLA . V 5 OLA A 1 2420 2420 OLA OLA . W 5 OLA A 1 2421 2421 OLA OLA . X 5 OLA A 1 2422 2422 OLA OLA . Y 5 OLA A 1 2423 2423 OLA OLA . Z 5 OLA A 1 2424 2424 OLA OLA . AA 5 OLA A 1 2425 2425 OLA OLA . BA 6 OLC A 1 2426 2426 OLC OLC . CA 6 OLC A 1 2427 2427 OLC OLC . DA 6 OLC A 1 2428 2428 OLC OLC . EA 6 OLC A 1 2429 2429 OLC OLC . FA 6 OLC A 1 2430 2430 OLC OLC . GA 7 TAR A 1 2431 2431 TAR TAR . HA 8 HOH A 1 2501 16 HOH HOH . HA 8 HOH A 2 2502 10 HOH HOH . HA 8 HOH A 3 2503 32 HOH HOH . HA 8 HOH A 4 2504 29 HOH HOH . HA 8 HOH A 5 2505 3 HOH HOH . HA 8 HOH A 6 2506 12 HOH HOH . HA 8 HOH A 7 2507 14 HOH HOH . HA 8 HOH A 8 2508 30 HOH HOH . HA 8 HOH A 9 2509 1 HOH HOH . HA 8 HOH A 10 2510 17 HOH HOH . HA 8 HOH A 11 2511 25 HOH HOH . HA 8 HOH A 12 2512 7 HOH HOH . HA 8 HOH A 13 2513 11 HOH HOH . HA 8 HOH A 14 2514 20 HOH HOH . HA 8 HOH A 15 2515 22 HOH HOH . HA 8 HOH A 16 2516 34 HOH HOH . HA 8 HOH A 17 2517 4 HOH HOH . HA 8 HOH A 18 2518 13 HOH HOH . HA 8 HOH A 19 2519 31 HOH HOH . HA 8 HOH A 20 2520 26 HOH HOH . HA 8 HOH A 21 2521 18 HOH HOH . HA 8 HOH A 22 2522 15 HOH HOH . HA 8 HOH A 23 2523 27 HOH HOH . HA 8 HOH A 24 2524 37 HOH HOH . HA 8 HOH A 25 2525 28 HOH HOH . HA 8 HOH A 26 2526 9 HOH HOH . HA 8 HOH A 27 2527 36 HOH HOH . HA 8 HOH A 28 2528 2 HOH HOH . HA 8 HOH A 29 2529 8 HOH HOH . HA 8 HOH A 30 2530 23 HOH HOH . HA 8 HOH A 31 2531 5 HOH HOH . HA 8 HOH A 32 2532 21 HOH HOH . HA 8 HOH A 33 2533 35 HOH HOH . HA 8 HOH A 34 2534 19 HOH HOH . HA 8 HOH A 35 2535 24 HOH HOH . HA 8 HOH A 36 2536 33 HOH HOH . HA 8 HOH A 37 2537 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . GA 7 19.205 168.137 32.697 0.5 126.39 ? O1 TAR 2431 A 1 HETATM 2 O O11 TAR . . . GA 7 17.245 168.914 33.257 0.5 121.45 -1 O11 TAR 2431 A 1 HETATM 3 C C1 TAR . . . GA 7 18.402 168.537 33.58 0.5 124.26 ? C1 TAR 2431 A 1 HETATM 4 C C2 TAR . . . GA 7 18.83 168.566 35.031 0.5 124.25 ? C2 TAR 2431 A 1 HETATM 5 O O2 TAR . . . GA 7 18.317 167.412 35.656 0.5 123.11 ? O2 TAR 2431 A 1 HETATM 6 C C3 TAR . . . GA 7 20.334 168.555 35.197 0.5 124.27 ? C3 TAR 2431 A 1 HETATM 7 O O3 TAR . . . GA 7 20.837 167.402 34.562 0.5 123.19 ? O3 TAR 2431 A 1 HETATM 8 C C4 TAR . . . GA 7 20.762 168.511 36.648 0.5 124.34 ? C4 TAR 2431 A 1 HETATM 9 O O4 TAR . . . GA 7 21.921 168.88 36.974 0.5 121.76 ? O4 TAR 2431 A 1 HETATM 10 O O41 TAR . . . GA 7 19.96 168.101 37.527 0.5 126.63 -1 O41 TAR 2431 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #