data_5N2W
#
_model_server_result.job_id            pADjw13XogTmEKEOWqqmRA 
_model_server_result.datetime_utc      '2024-11-26 01:23:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n2w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":511}' 
#
_entry.id    5N2W 
#
_exptl.entry_id    5N2W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.11 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'trimethylamine oxide' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5N2W 
_cell.length_a            147.29 
_cell.length_b            147.29 
_cell.length_c            87.49 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N2W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 287 A CYS 347 1_555 B CA 3CN 76 B 3CN 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
covale ? covale2 B C GLU 64 B GLU 64 1_555 B N SEP 65 B SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale3 B C SEP 65 B SEP 65 1_555 B N THR 66 B THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale4 B C GLY 75 B GLY 75 1_555 B ND 3CN 76 B 3CN 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
metalc ? metalc1 A SG CYS 90 A CYS 150 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc2 A SG CYS 94 A CYS 154 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc3 A SG CYS 106 A CYS 166 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 A SG CYS 109 A CYS 169 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 A SG CYS 136 A CYS 196 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc6 A SG CYS 141 A CYS 201 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc7 A SG CYS 152 A CYS 212 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc8 A NE2 HIS 155 A HIS 215 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc9 A SG CYS 178 A CYS 238 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc10 A SG CYS 181 A CYS 241 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc11 A SG CYS 193 A CYS 253 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc12 A ND1 HIS 197 A HIS 257 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc13 A SG CYS 200 A CYS 260 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc14 A SG CYS 203 A CYS 263 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc15 A SG CYS 229 A CYS 289 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc16 A SG CYS 233 A CYS 293 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc17 A SG CYS 272 A CYS 332 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc18 A SG CYS 277 A CYS 337 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc19 A SG CYS 292 A CYS 352 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc20 A SG CYS 300 A CYS 360 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc21 A SG CYS 305 A CYS 365 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc22 A SG CYS 308 A CYS 368 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc23 A NE2 HIS 313 A HIS 373 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc24 A SG CYS 317 A CYS 377 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc25 A SG CYS 358 A CYS 418 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc26 A SG CYS 361 A CYS 421 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc27 A SG CYS 376 A CYS 436 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc28 A SG CYS 381 A CYS 441 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc29 A SG CYS 386 A CYS 446 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc30 A SG CYS 389 A CYS 449 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc31 A SG CYS 397 A CYS 457 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc32 A NE2 HIS 401 A HIS 461 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C3 H9 N O' 
_chem_comp.formula_weight    75.11 
_chem_comp.id                TMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'trimethylamine oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NAC TMO sing 336 n n 
CAA HAA TMO sing 337 n n 
CAA HAAA TMO sing 338 n n 
CAA HAAB TMO sing 339 n n 
NAC CAD TMO sing 340 n n 
NAC CAB TMO sing 341 n n 
NAC OAE TMO sing 342 n n 
CAD HAD TMO sing 343 n n 
CAD HADA TMO sing 344 n n 
CAD HADB TMO sing 345 n n 
CAB HAB TMO sing 346 n n 
CAB HABA TMO sing 347 n n 
CAB HABB TMO sing 348 n n 
#
_atom_sites.entry_id                     5N2W 
_atom_sites.fract_transf_matrix[1][1]    0.006789 
_atom_sites.fract_transf_matrix[1][2]    0.00392 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 501 ZN ZN . 
D 3 ZN A 1 502 502 ZN ZN . 
E 3 ZN A 1 503 503 ZN ZN . 
F 3 ZN A 1 504 504 ZN ZN . 
G 3 ZN A 1 505 505 ZN ZN . 
H 3 ZN A 1 506 506 ZN ZN . 
I 3 ZN A 1 507 507 ZN ZN . 
J 3 ZN A 1 508 508 ZN ZN . 
K 4 CL A 1 509 509 CL CL . 
L 5 TMO A 1 510 510 TMO TMO . 
M 5 TMO A 1 511 511 TMO TMO . 
N 6 HOH A 1 601 601 HOH HOH . 
N 6 HOH A 2 602 602 HOH HOH . 
N 6 HOH A 3 603 603 HOH HOH . 
N 6 HOH A 4 604 604 HOH HOH . 
N 6 HOH A 5 605 605 HOH HOH . 
N 6 HOH A 6 606 606 HOH HOH . 
N 6 HOH A 7 607 607 HOH HOH . 
N 6 HOH A 8 608 608 HOH HOH . 
N 6 HOH A 9 609 609 HOH HOH . 
N 6 HOH A 10 610 610 HOH HOH . 
N 6 HOH A 11 611 611 HOH HOH . 
N 6 HOH A 12 612 612 HOH HOH . 
N 6 HOH A 13 613 613 HOH HOH . 
N 6 HOH A 14 614 614 HOH HOH . 
N 6 HOH A 15 615 615 HOH HOH . 
N 6 HOH A 16 616 616 HOH HOH . 
N 6 HOH A 17 617 617 HOH HOH . 
N 6 HOH A 18 618 618 HOH HOH . 
N 6 HOH A 19 619 619 HOH HOH . 
N 6 HOH A 20 620 620 HOH HOH . 
N 6 HOH A 21 621 621 HOH HOH . 
N 6 HOH A 22 622 622 HOH HOH . 
N 6 HOH A 23 623 623 HOH HOH . 
N 6 HOH A 24 624 624 HOH HOH . 
O 6 HOH B 1 601 601 HOH HOH . 
O 6 HOH B 2 602 602 HOH HOH . 
O 6 HOH B 3 603 603 HOH HOH . 
O 6 HOH B 4 604 604 HOH HOH . 
O 6 HOH B 5 605 605 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA TMO . . . M 5 -25.464 -35.683 18.372 1 91.58 ? CAA TMO 511 A 1 
HETATM 2 N NAC TMO . . . M 5 -24.653 -35.338 17.198 1 91.22 ? NAC TMO 511 A 1 
HETATM 3 C CAD TMO . . . M 5 -23.628 -36.361 17.006 1 90.64 ? CAD TMO 511 A 1 
HETATM 4 C CAB TMO . . . M 5 -25.468 -35.254 15.975 1 89.44 ? CAB TMO 511 A 1 
HETATM 5 O OAE TMO . . . M 5 -24.027 -34.124 17.469 1 93.23 ? OAE TMO 511 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#