data_5N38
#
_model_server_result.job_id            WJ7-YK1sG086GQyb8Q5rQA 
_model_server_result.datetime_utc      '2024-10-28 02:30:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2507}' 
#
_entry.id    5N38 
#
_exptl.entry_id    5N38 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5N38 
_cell.length_a            146.54 
_cell.length_b            146.54 
_cell.length_c            88.44 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLU 64 B GLU 64 1_555 B N SEP 65 B SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale2 B C SEP 65 B SEP 65 1_555 B N THR 66 B THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale3 B C GLY 75 B GLY 75 1_555 B ND 3CN 76 B 3CN 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
metalc ? metalc1 A SG CYS 90 A CYS 150 1_555 L ZN ZN . A ZN 2510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 A SG CYS 94 A CYS 154 1_555 L ZN ZN . A ZN 2510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc3 A SG CYS 106 A CYS 166 1_555 K ZN ZN . A ZN 2509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc4 A SG CYS 109 A CYS 169 1_555 K ZN ZN . A ZN 2509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc5 A SG CYS 136 A CYS 196 1_555 K ZN ZN . A ZN 2509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc6 A SG CYS 141 A CYS 201 1_555 K ZN ZN . A ZN 2509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc7 A SG CYS 152 A CYS 212 1_555 L ZN ZN . A ZN 2510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc8 A NE2 HIS 155 A HIS 215 1_555 L ZN ZN . A ZN 2510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 A SG CYS 178 A CYS 238 1_555 E ZN ZN . A ZN 2503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc10 A SG CYS 181 A CYS 241 1_555 E ZN ZN . A ZN 2503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc11 A SG CYS 193 A CYS 253 1_555 F ZN ZN . A ZN 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc12 A ND1 HIS 197 A HIS 257 1_555 F ZN ZN . A ZN 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc13 A SG CYS 200 A CYS 260 1_555 E ZN ZN . A ZN 2503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc14 A SG CYS 203 A CYS 263 1_555 E ZN ZN . A ZN 2503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc15 A SG CYS 229 A CYS 289 1_555 F ZN ZN . A ZN 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc16 A SG CYS 233 A CYS 293 1_555 F ZN ZN . A ZN 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc17 A SG CYS 272 A CYS 332 1_555 H ZN ZN . A ZN 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc18 A SG CYS 277 A CYS 337 1_555 H ZN ZN . A ZN 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc19 A SG CYS 292 A CYS 352 1_555 H ZN ZN . A ZN 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc20 A SG CYS 300 A CYS 360 1_555 H ZN ZN . A ZN 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc21 A SG CYS 305 A CYS 365 1_555 G ZN ZN . A ZN 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc22 A SG CYS 308 A CYS 368 1_555 G ZN ZN . A ZN 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc23 A NE2 HIS 313 A HIS 373 1_555 G ZN ZN . A ZN 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc24 A SG CYS 317 A CYS 377 1_555 G ZN ZN . A ZN 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc25 A SG CYS 358 A CYS 418 1_555 J ZN ZN . A ZN 2508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc26 A SG CYS 361 A CYS 421 1_555 J ZN ZN . A ZN 2508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc27 A SG CYS 376 A CYS 436 1_555 J ZN ZN . A ZN 2508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc28 A SG CYS 381 A CYS 441 1_555 J ZN ZN . A ZN 2508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc29 A SG CYS 386 A CYS 446 1_555 I ZN ZN . A ZN 2507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc30 A SG CYS 389 A CYS 449 1_555 I ZN ZN . A ZN 2507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc31 A SG CYS 397 A CYS 457 1_555 I ZN ZN . A ZN 2507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc32 A NE2 HIS 401 A HIS 461 1_555 I ZN ZN . A ZN 2507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5N38 
_atom_sites.fract_transf_matrix[1][1]    0.006824 
_atom_sites.fract_transf_matrix[1][2]    0.00394 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PEG A 1 2501 3 PEG PEG . 
D 4 CL A 1 2502 4 CL CL . 
E 5 ZN A 1 2503 1 ZN ZN . 
F 5 ZN A 1 2504 2 ZN ZN . 
G 5 ZN A 1 2505 3 ZN ZN . 
H 5 ZN A 1 2506 4 ZN ZN . 
I 5 ZN A 1 2507 5 ZN ZN . 
J 5 ZN A 1 2508 6 ZN ZN . 
K 5 ZN A 1 2509 7 ZN ZN . 
L 5 ZN A 1 2510 8 ZN ZN . 
M 6 HOH A 1 2601 16 HOH HOH . 
M 6 HOH A 2 2602 67 HOH HOH . 
M 6 HOH A 3 2603 29 HOH HOH . 
M 6 HOH A 4 2604 30 HOH HOH . 
M 6 HOH A 5 2605 55 HOH HOH . 
M 6 HOH A 6 2606 13 HOH HOH . 
M 6 HOH A 7 2607 70 HOH HOH . 
M 6 HOH A 8 2608 12 HOH HOH . 
M 6 HOH A 9 2609 61 HOH HOH . 
M 6 HOH A 10 2610 71 HOH HOH . 
M 6 HOH A 11 2611 31 HOH HOH . 
M 6 HOH A 12 2612 46 HOH HOH . 
M 6 HOH A 13 2613 7 HOH HOH . 
M 6 HOH A 14 2614 45 HOH HOH . 
M 6 HOH A 15 2615 42 HOH HOH . 
M 6 HOH A 16 2616 52 HOH HOH . 
M 6 HOH A 17 2617 38 HOH HOH . 
M 6 HOH A 18 2618 5 HOH HOH . 
M 6 HOH A 19 2619 59 HOH HOH . 
M 6 HOH A 20 2620 39 HOH HOH . 
M 6 HOH A 21 2621 50 HOH HOH . 
M 6 HOH A 22 2622 41 HOH HOH . 
M 6 HOH A 23 2623 17 HOH HOH . 
M 6 HOH A 24 2624 43 HOH HOH . 
M 6 HOH A 25 2625 20 HOH HOH . 
M 6 HOH A 26 2626 53 HOH HOH . 
M 6 HOH A 27 2627 51 HOH HOH . 
M 6 HOH A 28 2628 19 HOH HOH . 
M 6 HOH A 29 2629 32 HOH HOH . 
M 6 HOH A 30 2630 14 HOH HOH . 
M 6 HOH A 31 2631 44 HOH HOH . 
M 6 HOH A 32 2632 18 HOH HOH . 
M 6 HOH A 33 2633 69 HOH HOH . 
M 6 HOH A 34 2634 40 HOH HOH . 
M 6 HOH A 35 2635 10 HOH HOH . 
M 6 HOH A 36 2636 68 HOH HOH . 
M 6 HOH A 37 2637 27 HOH HOH . 
M 6 HOH A 38 2638 26 HOH HOH . 
M 6 HOH A 39 2639 23 HOH HOH . 
M 6 HOH A 40 2640 15 HOH HOH . 
M 6 HOH A 41 2641 3 HOH HOH . 
M 6 HOH A 42 2642 33 HOH HOH . 
M 6 HOH A 43 2643 63 HOH HOH . 
M 6 HOH A 44 2644 25 HOH HOH . 
M 6 HOH A 45 2645 54 HOH HOH . 
N 6 HOH B 1 101 57 HOH HOH . 
N 6 HOH B 2 102 56 HOH HOH . 
N 6 HOH B 3 103 72 HOH HOH . 
N 6 HOH B 4 104 58 HOH HOH . 
N 6 HOH B 5 105 64 HOH HOH . 
N 6 HOH B 6 106 73 HOH HOH . 
N 6 HOH B 7 107 60 HOH HOH . 
N 6 HOH B 8 108 62 HOH HOH . 
N 6 HOH B 9 109 65 HOH HOH . 
N 6 HOH B 10 110 66 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -54.189 
_atom_site.Cartn_y               -62.583 
_atom_site.Cartn_z               10.494 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        46.61 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           2507 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#