data_5N3A # _model_server_result.job_id 3StNXJDR6K9z9kuP6KGG_Q _model_server_result.datetime_utc '2024-11-14 23:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5N3A # _exptl.entry_id 5N3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N3A _cell.length_a 58.326 _cell.length_b 72.411 _cell.length_c 108.434 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 107 n n S C1 DMS sing 108 n n S C2 DMS sing 109 n n C1 H11 DMS sing 110 n n C1 H12 DMS sing 111 n n C1 H13 DMS sing 112 n n C2 H21 DMS sing 113 n n C2 H22 DMS sing 114 n n C2 H23 DMS sing 115 n n # _atom_sites.entry_id 5N3A _atom_sites.fract_transf_matrix[1][1] 0.017145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMS A 1 401 1 DMS DMS . D 3 DMS A 1 402 2 DMS DMS . E 4 MPD A 1 403 1 MPD MPD . F 5 46P A 1 404 1 46P XXX . G 6 HOH A 1 501 132 HOH HOH . G 6 HOH A 2 502 100 HOH HOH . G 6 HOH A 3 503 212 HOH HOH . G 6 HOH A 4 504 48 HOH HOH . G 6 HOH A 5 505 193 HOH HOH . G 6 HOH A 6 506 218 HOH HOH . G 6 HOH A 7 507 197 HOH HOH . G 6 HOH A 8 508 250 HOH HOH . G 6 HOH A 9 509 214 HOH HOH . G 6 HOH A 10 510 213 HOH HOH . G 6 HOH A 11 511 180 HOH HOH . G 6 HOH A 12 512 169 HOH HOH . G 6 HOH A 13 513 257 HOH HOH . G 6 HOH A 14 514 94 HOH HOH . G 6 HOH A 15 515 254 HOH HOH . G 6 HOH A 16 516 172 HOH HOH . G 6 HOH A 17 517 120 HOH HOH . G 6 HOH A 18 518 110 HOH HOH . G 6 HOH A 19 519 158 HOH HOH . G 6 HOH A 20 520 75 HOH HOH . G 6 HOH A 21 521 59 HOH HOH . G 6 HOH A 22 522 143 HOH HOH . G 6 HOH A 23 523 140 HOH HOH . G 6 HOH A 24 524 189 HOH HOH . G 6 HOH A 25 525 108 HOH HOH . G 6 HOH A 26 526 38 HOH HOH . G 6 HOH A 27 527 134 HOH HOH . G 6 HOH A 28 528 217 HOH HOH . G 6 HOH A 29 529 67 HOH HOH . G 6 HOH A 30 530 102 HOH HOH . G 6 HOH A 31 531 86 HOH HOH . G 6 HOH A 32 532 23 HOH HOH . G 6 HOH A 33 533 188 HOH HOH . G 6 HOH A 34 534 56 HOH HOH . G 6 HOH A 35 535 194 HOH HOH . G 6 HOH A 36 536 195 HOH HOH . G 6 HOH A 37 537 14 HOH HOH . G 6 HOH A 38 538 255 HOH HOH . G 6 HOH A 39 539 166 HOH HOH . G 6 HOH A 40 540 47 HOH HOH . G 6 HOH A 41 541 58 HOH HOH . G 6 HOH A 42 542 210 HOH HOH . G 6 HOH A 43 543 101 HOH HOH . G 6 HOH A 44 544 127 HOH HOH . G 6 HOH A 45 545 11 HOH HOH . G 6 HOH A 46 546 85 HOH HOH . G 6 HOH A 47 547 149 HOH HOH . G 6 HOH A 48 548 57 HOH HOH . G 6 HOH A 49 549 153 HOH HOH . G 6 HOH A 50 550 252 HOH HOH . G 6 HOH A 51 551 8 HOH HOH . G 6 HOH A 52 552 31 HOH HOH . G 6 HOH A 53 553 186 HOH HOH . G 6 HOH A 54 554 129 HOH HOH . G 6 HOH A 55 555 70 HOH HOH . G 6 HOH A 56 556 121 HOH HOH . G 6 HOH A 57 557 35 HOH HOH . G 6 HOH A 58 558 84 HOH HOH . G 6 HOH A 59 559 39 HOH HOH . G 6 HOH A 60 560 201 HOH HOH . G 6 HOH A 61 561 34 HOH HOH . G 6 HOH A 62 562 20 HOH HOH . G 6 HOH A 63 563 80 HOH HOH . G 6 HOH A 64 564 83 HOH HOH . G 6 HOH A 65 565 92 HOH HOH . G 6 HOH A 66 566 211 HOH HOH . G 6 HOH A 67 567 9 HOH HOH . G 6 HOH A 68 568 43 HOH HOH . G 6 HOH A 69 569 65 HOH HOH . G 6 HOH A 70 570 13 HOH HOH . G 6 HOH A 71 571 72 HOH HOH . G 6 HOH A 72 572 49 HOH HOH . G 6 HOH A 73 573 203 HOH HOH . G 6 HOH A 74 574 89 HOH HOH . G 6 HOH A 75 575 81 HOH HOH . G 6 HOH A 76 576 12 HOH HOH . G 6 HOH A 77 577 111 HOH HOH . G 6 HOH A 78 578 42 HOH HOH . G 6 HOH A 79 579 249 HOH HOH . G 6 HOH A 80 580 36 HOH HOH . G 6 HOH A 81 581 19 HOH HOH . G 6 HOH A 82 582 155 HOH HOH . G 6 HOH A 83 583 202 HOH HOH . G 6 HOH A 84 584 78 HOH HOH . G 6 HOH A 85 585 18 HOH HOH . G 6 HOH A 86 586 24 HOH HOH . G 6 HOH A 87 587 106 HOH HOH . G 6 HOH A 88 588 135 HOH HOH . G 6 HOH A 89 589 231 HOH HOH . G 6 HOH A 90 590 103 HOH HOH . G 6 HOH A 91 591 234 HOH HOH . G 6 HOH A 92 592 30 HOH HOH . G 6 HOH A 93 593 256 HOH HOH . G 6 HOH A 94 594 71 HOH HOH . G 6 HOH A 95 595 28 HOH HOH . G 6 HOH A 96 596 91 HOH HOH . G 6 HOH A 97 597 37 HOH HOH . G 6 HOH A 98 598 27 HOH HOH . G 6 HOH A 99 599 6 HOH HOH . G 6 HOH A 100 600 2 HOH HOH . G 6 HOH A 101 601 17 HOH HOH . G 6 HOH A 102 602 128 HOH HOH . G 6 HOH A 103 603 150 HOH HOH . G 6 HOH A 104 604 54 HOH HOH . G 6 HOH A 105 605 165 HOH HOH . G 6 HOH A 106 606 32 HOH HOH . G 6 HOH A 107 607 136 HOH HOH . G 6 HOH A 108 608 66 HOH HOH . G 6 HOH A 109 609 168 HOH HOH . G 6 HOH A 110 610 116 HOH HOH . G 6 HOH A 111 611 225 HOH HOH . G 6 HOH A 112 612 61 HOH HOH . G 6 HOH A 113 613 25 HOH HOH . G 6 HOH A 114 614 1 HOH HOH . G 6 HOH A 115 615 10 HOH HOH . G 6 HOH A 116 616 123 HOH HOH . G 6 HOH A 117 617 73 HOH HOH . G 6 HOH A 118 618 5 HOH HOH . G 6 HOH A 119 619 99 HOH HOH . G 6 HOH A 120 620 50 HOH HOH . G 6 HOH A 121 621 171 HOH HOH . G 6 HOH A 122 622 107 HOH HOH . G 6 HOH A 123 623 163 HOH HOH . G 6 HOH A 124 624 125 HOH HOH . G 6 HOH A 125 625 196 HOH HOH . G 6 HOH A 126 626 88 HOH HOH . G 6 HOH A 127 627 137 HOH HOH . G 6 HOH A 128 628 74 HOH HOH . G 6 HOH A 129 629 264 HOH HOH . G 6 HOH A 130 630 44 HOH HOH . G 6 HOH A 131 631 152 HOH HOH . G 6 HOH A 132 632 187 HOH HOH . G 6 HOH A 133 633 97 HOH HOH . G 6 HOH A 134 634 138 HOH HOH . G 6 HOH A 135 635 77 HOH HOH . G 6 HOH A 136 636 216 HOH HOH . G 6 HOH A 137 637 133 HOH HOH . G 6 HOH A 138 638 142 HOH HOH . G 6 HOH A 139 639 46 HOH HOH . G 6 HOH A 140 640 79 HOH HOH . G 6 HOH A 141 641 41 HOH HOH . G 6 HOH A 142 642 220 HOH HOH . G 6 HOH A 143 643 22 HOH HOH . G 6 HOH A 144 644 7 HOH HOH . G 6 HOH A 145 645 62 HOH HOH . G 6 HOH A 146 646 159 HOH HOH . G 6 HOH A 147 647 146 HOH HOH . G 6 HOH A 148 648 53 HOH HOH . G 6 HOH A 149 649 145 HOH HOH . G 6 HOH A 150 650 269 HOH HOH . G 6 HOH A 151 651 151 HOH HOH . G 6 HOH A 152 652 69 HOH HOH . G 6 HOH A 153 653 118 HOH HOH . G 6 HOH A 154 654 15 HOH HOH . G 6 HOH A 155 655 64 HOH HOH . G 6 HOH A 156 656 95 HOH HOH . G 6 HOH A 157 657 33 HOH HOH . G 6 HOH A 158 658 55 HOH HOH . G 6 HOH A 159 659 162 HOH HOH . G 6 HOH A 160 660 45 HOH HOH . G 6 HOH A 161 661 167 HOH HOH . G 6 HOH A 162 662 60 HOH HOH . G 6 HOH A 163 663 141 HOH HOH . G 6 HOH A 164 664 115 HOH HOH . G 6 HOH A 165 665 130 HOH HOH . G 6 HOH A 166 666 157 HOH HOH . G 6 HOH A 167 667 181 HOH HOH . G 6 HOH A 168 668 126 HOH HOH . G 6 HOH A 169 669 177 HOH HOH . G 6 HOH A 170 670 117 HOH HOH . G 6 HOH A 171 671 208 HOH HOH . G 6 HOH A 172 672 16 HOH HOH . G 6 HOH A 173 673 237 HOH HOH . G 6 HOH A 174 674 199 HOH HOH . G 6 HOH A 175 675 209 HOH HOH . G 6 HOH A 176 676 131 HOH HOH . G 6 HOH A 177 677 185 HOH HOH . G 6 HOH A 178 678 105 HOH HOH . G 6 HOH A 179 679 236 HOH HOH . G 6 HOH A 180 680 76 HOH HOH . G 6 HOH A 181 681 93 HOH HOH . G 6 HOH A 182 682 29 HOH HOH . G 6 HOH A 183 683 198 HOH HOH . G 6 HOH A 184 684 109 HOH HOH . G 6 HOH A 185 685 227 HOH HOH . G 6 HOH A 186 686 113 HOH HOH . G 6 HOH A 187 687 176 HOH HOH . G 6 HOH A 188 688 51 HOH HOH . G 6 HOH A 189 689 156 HOH HOH . G 6 HOH A 190 690 182 HOH HOH . G 6 HOH A 191 691 263 HOH HOH . G 6 HOH A 192 692 173 HOH HOH . G 6 HOH A 193 693 119 HOH HOH . G 6 HOH A 194 694 261 HOH HOH . G 6 HOH A 195 695 245 HOH HOH . G 6 HOH A 196 696 114 HOH HOH . G 6 HOH A 197 697 124 HOH HOH . G 6 HOH A 198 698 147 HOH HOH . G 6 HOH A 199 699 175 HOH HOH . G 6 HOH A 200 700 258 HOH HOH . G 6 HOH A 201 701 40 HOH HOH . G 6 HOH A 202 702 178 HOH HOH . G 6 HOH A 203 703 262 HOH HOH . G 6 HOH A 204 704 260 HOH HOH . G 6 HOH A 205 705 242 HOH HOH . G 6 HOH A 206 706 21 HOH HOH . G 6 HOH A 207 707 98 HOH HOH . G 6 HOH A 208 708 259 HOH HOH . G 6 HOH A 209 709 191 HOH HOH . G 6 HOH A 210 710 222 HOH HOH . G 6 HOH A 211 711 139 HOH HOH . G 6 HOH A 212 712 184 HOH HOH . G 6 HOH A 213 713 161 HOH HOH . G 6 HOH A 214 714 266 HOH HOH . G 6 HOH A 215 715 238 HOH HOH . G 6 HOH A 216 716 233 HOH HOH . G 6 HOH A 217 717 219 HOH HOH . G 6 HOH A 218 718 144 HOH HOH . G 6 HOH A 219 719 265 HOH HOH . G 6 HOH A 220 720 112 HOH HOH . G 6 HOH A 221 721 228 HOH HOH . G 6 HOH A 222 722 174 HOH HOH . G 6 HOH A 223 723 52 HOH HOH . G 6 HOH A 224 724 183 HOH HOH . G 6 HOH A 225 725 268 HOH HOH . G 6 HOH A 226 726 190 HOH HOH . G 6 HOH A 227 727 104 HOH HOH . G 6 HOH A 228 728 96 HOH HOH . G 6 HOH A 229 729 200 HOH HOH . G 6 HOH A 230 730 148 HOH HOH . G 6 HOH A 231 731 267 HOH HOH . G 6 HOH A 232 732 240 HOH HOH . G 6 HOH A 233 733 154 HOH HOH . H 6 HOH B 1 101 68 HOH HOH . H 6 HOH B 2 102 3 HOH HOH . H 6 HOH B 3 103 4 HOH HOH . H 6 HOH B 4 104 26 HOH HOH . H 6 HOH B 5 105 87 HOH HOH . H 6 HOH B 6 106 192 HOH HOH . H 6 HOH B 7 107 221 HOH HOH . H 6 HOH B 8 108 90 HOH HOH . H 6 HOH B 9 109 122 HOH HOH . H 6 HOH B 10 110 63 HOH HOH . H 6 HOH B 11 111 248 HOH HOH . H 6 HOH B 12 112 82 HOH HOH . H 6 HOH B 13 113 205 HOH HOH . H 6 HOH B 14 114 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -13.339 3.333 -27.568 1 82.77 ? S DMS 401 A 1 HETATM 2 O O DMS . . . C 3 -14.685 2.712 -27.755 1 82.49 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . C 3 -12.555 3.575 -29.186 1 82.83 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . C 3 -13.585 5.055 -27.078 1 82.52 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 484 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #