data_5N3D # _model_server_result.job_id QAlfbEwncHCfD2E76Y-URQ _model_server_result.datetime_utc '2024-11-28 12:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5N3D # _exptl.entry_id 5N3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[azanyl-[4-(trifluoromethyl)phenyl]methylidene]azanium' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N3D _cell.length_a 58.419 _cell.length_b 72.389 _cell.length_c 108.383 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H8 F3 N2 1' _chem_comp.formula_weight 189.158 _chem_comp.id 8NE _chem_comp.mon_nstd_flag . _chem_comp.name '[azanyl-[4-(trifluoromethyl)phenyl]methylidene]azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F11 C10 8NE sing 1 n n F12 C10 8NE sing 2 n n C10 C3 8NE sing 3 n n C10 F13 8NE sing 4 n n C3 C4 8NE doub 5 n y C3 C2 8NE sing 6 n y C4 C5 8NE sing 7 n y C2 C1 8NE doub 8 n y C5 C6 8NE doub 9 n y C1 C6 8NE sing 10 n y C6 C7 8NE sing 11 n n C7 N8 8NE doub 12 n n C7 N9 8NE sing 13 n n C1 H1 8NE sing 14 n n C2 H2 8NE sing 15 n n C4 H4 8NE sing 16 n n C5 H5 8NE sing 17 n n N8 HN8 8NE sing 18 n n N9 HN9 8NE sing 19 n n N9 HN9A 8NE sing 20 n n N8 H3 8NE sing 21 n n # _atom_sites.entry_id 5N3D _atom_sites.fract_transf_matrix[1][1] 0.017118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8NE A 1 401 1 8NE XXX . D 4 MPD A 1 402 1 MPD MPD . E 5 HOH A 1 501 193 HOH HOH . E 5 HOH A 2 502 92 HOH HOH . E 5 HOH A 3 503 188 HOH HOH . E 5 HOH A 4 504 175 HOH HOH . E 5 HOH A 5 505 176 HOH HOH . E 5 HOH A 6 506 190 HOH HOH . E 5 HOH A 7 507 170 HOH HOH . E 5 HOH A 8 508 180 HOH HOH . E 5 HOH A 9 509 195 HOH HOH . E 5 HOH A 10 510 120 HOH HOH . E 5 HOH A 11 511 103 HOH HOH . E 5 HOH A 12 512 212 HOH HOH . E 5 HOH A 13 513 42 HOH HOH . E 5 HOH A 14 514 90 HOH HOH . E 5 HOH A 15 515 210 HOH HOH . E 5 HOH A 16 516 108 HOH HOH . E 5 HOH A 17 517 200 HOH HOH . E 5 HOH A 18 518 153 HOH HOH . E 5 HOH A 19 519 182 HOH HOH . E 5 HOH A 20 520 67 HOH HOH . E 5 HOH A 21 521 95 HOH HOH . E 5 HOH A 22 522 82 HOH HOH . E 5 HOH A 23 523 96 HOH HOH . E 5 HOH A 24 524 222 HOH HOH . E 5 HOH A 25 525 85 HOH HOH . E 5 HOH A 26 526 118 HOH HOH . E 5 HOH A 27 527 146 HOH HOH . E 5 HOH A 28 528 134 HOH HOH . E 5 HOH A 29 529 9 HOH HOH . E 5 HOH A 30 530 48 HOH HOH . E 5 HOH A 31 531 219 HOH HOH . E 5 HOH A 32 532 10 HOH HOH . E 5 HOH A 33 533 121 HOH HOH . E 5 HOH A 34 534 54 HOH HOH . E 5 HOH A 35 535 228 HOH HOH . E 5 HOH A 36 536 34 HOH HOH . E 5 HOH A 37 537 35 HOH HOH . E 5 HOH A 38 538 115 HOH HOH . E 5 HOH A 39 539 61 HOH HOH . E 5 HOH A 40 540 159 HOH HOH . E 5 HOH A 41 541 147 HOH HOH . E 5 HOH A 42 542 109 HOH HOH . E 5 HOH A 43 543 47 HOH HOH . E 5 HOH A 44 544 41 HOH HOH . E 5 HOH A 45 545 99 HOH HOH . E 5 HOH A 46 546 75 HOH HOH . E 5 HOH A 47 547 71 HOH HOH . E 5 HOH A 48 548 4 HOH HOH . E 5 HOH A 49 549 80 HOH HOH . E 5 HOH A 50 550 30 HOH HOH . E 5 HOH A 51 551 68 HOH HOH . E 5 HOH A 52 552 84 HOH HOH . E 5 HOH A 53 553 132 HOH HOH . E 5 HOH A 54 554 49 HOH HOH . E 5 HOH A 55 555 86 HOH HOH . E 5 HOH A 56 556 198 HOH HOH . E 5 HOH A 57 557 32 HOH HOH . E 5 HOH A 58 558 51 HOH HOH . E 5 HOH A 59 559 59 HOH HOH . E 5 HOH A 60 560 43 HOH HOH . E 5 HOH A 61 561 36 HOH HOH . E 5 HOH A 62 562 44 HOH HOH . E 5 HOH A 63 563 52 HOH HOH . E 5 HOH A 64 564 28 HOH HOH . E 5 HOH A 65 565 139 HOH HOH . E 5 HOH A 66 566 169 HOH HOH . E 5 HOH A 67 567 136 HOH HOH . E 5 HOH A 68 568 27 HOH HOH . E 5 HOH A 69 569 24 HOH HOH . E 5 HOH A 70 570 70 HOH HOH . E 5 HOH A 71 571 15 HOH HOH . E 5 HOH A 72 572 23 HOH HOH . E 5 HOH A 73 573 186 HOH HOH . E 5 HOH A 74 574 12 HOH HOH . E 5 HOH A 75 575 13 HOH HOH . E 5 HOH A 76 576 143 HOH HOH . E 5 HOH A 77 577 31 HOH HOH . E 5 HOH A 78 578 140 HOH HOH . E 5 HOH A 79 579 25 HOH HOH . E 5 HOH A 80 580 160 HOH HOH . E 5 HOH A 81 581 40 HOH HOH . E 5 HOH A 82 582 214 HOH HOH . E 5 HOH A 83 583 151 HOH HOH . E 5 HOH A 84 584 204 HOH HOH . E 5 HOH A 85 585 141 HOH HOH . E 5 HOH A 86 586 224 HOH HOH . E 5 HOH A 87 587 64 HOH HOH . E 5 HOH A 88 588 11 HOH HOH . E 5 HOH A 89 589 21 HOH HOH . E 5 HOH A 90 590 33 HOH HOH . E 5 HOH A 91 591 104 HOH HOH . E 5 HOH A 92 592 154 HOH HOH . E 5 HOH A 93 593 57 HOH HOH . E 5 HOH A 94 594 119 HOH HOH . E 5 HOH A 95 595 87 HOH HOH . E 5 HOH A 96 596 142 HOH HOH . E 5 HOH A 97 597 58 HOH HOH . E 5 HOH A 98 598 112 HOH HOH . E 5 HOH A 99 599 17 HOH HOH . E 5 HOH A 100 600 37 HOH HOH . E 5 HOH A 101 601 78 HOH HOH . E 5 HOH A 102 602 5 HOH HOH . E 5 HOH A 103 603 20 HOH HOH . E 5 HOH A 104 604 62 HOH HOH . E 5 HOH A 105 605 199 HOH HOH . E 5 HOH A 106 606 97 HOH HOH . E 5 HOH A 107 607 14 HOH HOH . E 5 HOH A 108 608 74 HOH HOH . E 5 HOH A 109 609 66 HOH HOH . E 5 HOH A 110 610 91 HOH HOH . E 5 HOH A 111 611 111 HOH HOH . E 5 HOH A 112 612 125 HOH HOH . E 5 HOH A 113 613 94 HOH HOH . E 5 HOH A 114 614 218 HOH HOH . E 5 HOH A 115 615 167 HOH HOH . E 5 HOH A 116 616 113 HOH HOH . E 5 HOH A 117 617 53 HOH HOH . E 5 HOH A 118 618 100 HOH HOH . E 5 HOH A 119 619 79 HOH HOH . E 5 HOH A 120 620 157 HOH HOH . E 5 HOH A 121 621 60 HOH HOH . E 5 HOH A 122 622 26 HOH HOH . E 5 HOH A 123 623 145 HOH HOH . E 5 HOH A 124 624 124 HOH HOH . E 5 HOH A 125 625 98 HOH HOH . E 5 HOH A 126 626 161 HOH HOH . E 5 HOH A 127 627 158 HOH HOH . E 5 HOH A 128 628 211 HOH HOH . E 5 HOH A 129 629 69 HOH HOH . E 5 HOH A 130 630 105 HOH HOH . E 5 HOH A 131 631 72 HOH HOH . E 5 HOH A 132 632 110 HOH HOH . E 5 HOH A 133 633 130 HOH HOH . E 5 HOH A 134 634 18 HOH HOH . E 5 HOH A 135 635 144 HOH HOH . E 5 HOH A 136 636 189 HOH HOH . E 5 HOH A 137 637 209 HOH HOH . E 5 HOH A 138 638 138 HOH HOH . E 5 HOH A 139 639 156 HOH HOH . E 5 HOH A 140 640 50 HOH HOH . E 5 HOH A 141 641 179 HOH HOH . E 5 HOH A 142 642 150 HOH HOH . E 5 HOH A 143 643 19 HOH HOH . E 5 HOH A 144 644 184 HOH HOH . E 5 HOH A 145 645 38 HOH HOH . E 5 HOH A 146 646 77 HOH HOH . E 5 HOH A 147 647 22 HOH HOH . E 5 HOH A 148 648 102 HOH HOH . E 5 HOH A 149 649 201 HOH HOH . E 5 HOH A 150 650 181 HOH HOH . E 5 HOH A 151 651 89 HOH HOH . E 5 HOH A 152 652 56 HOH HOH . E 5 HOH A 153 653 133 HOH HOH . E 5 HOH A 154 654 76 HOH HOH . E 5 HOH A 155 655 65 HOH HOH . E 5 HOH A 156 656 29 HOH HOH . E 5 HOH A 157 657 208 HOH HOH . E 5 HOH A 158 658 155 HOH HOH . E 5 HOH A 159 659 149 HOH HOH . E 5 HOH A 160 660 191 HOH HOH . E 5 HOH A 161 661 148 HOH HOH . E 5 HOH A 162 662 81 HOH HOH . E 5 HOH A 163 663 174 HOH HOH . E 5 HOH A 164 664 229 HOH HOH . E 5 HOH A 165 665 101 HOH HOH . E 5 HOH A 166 666 202 HOH HOH . E 5 HOH A 167 667 117 HOH HOH . E 5 HOH A 168 668 183 HOH HOH . E 5 HOH A 169 669 223 HOH HOH . E 5 HOH A 170 670 55 HOH HOH . E 5 HOH A 171 671 203 HOH HOH . E 5 HOH A 172 672 207 HOH HOH . E 5 HOH A 173 673 205 HOH HOH . E 5 HOH A 174 674 39 HOH HOH . E 5 HOH A 175 675 227 HOH HOH . E 5 HOH A 176 676 206 HOH HOH . E 5 HOH A 177 677 225 HOH HOH . E 5 HOH A 178 678 213 HOH HOH . E 5 HOH A 179 679 16 HOH HOH . E 5 HOH A 180 680 88 HOH HOH . E 5 HOH A 181 681 192 HOH HOH . E 5 HOH A 182 682 171 HOH HOH . E 5 HOH A 183 683 131 HOH HOH . E 5 HOH A 184 684 194 HOH HOH . E 5 HOH A 185 685 164 HOH HOH . E 5 HOH A 186 686 114 HOH HOH . E 5 HOH A 187 687 173 HOH HOH . E 5 HOH A 188 688 83 HOH HOH . E 5 HOH A 189 689 166 HOH HOH . E 5 HOH A 190 690 178 HOH HOH . E 5 HOH A 191 691 129 HOH HOH . E 5 HOH A 192 692 196 HOH HOH . E 5 HOH A 193 693 187 HOH HOH . E 5 HOH A 194 694 197 HOH HOH . E 5 HOH A 195 695 226 HOH HOH . E 5 HOH A 196 696 127 HOH HOH . E 5 HOH A 197 697 135 HOH HOH . E 5 HOH A 198 698 122 HOH HOH . E 5 HOH A 199 699 46 HOH HOH . E 5 HOH A 200 700 168 HOH HOH . E 5 HOH A 201 701 217 HOH HOH . E 5 HOH A 202 702 152 HOH HOH . E 5 HOH A 203 703 185 HOH HOH . E 5 HOH A 204 704 215 HOH HOH . E 5 HOH A 205 705 128 HOH HOH . E 5 HOH A 206 706 177 HOH HOH . E 5 HOH A 207 707 116 HOH HOH . E 5 HOH A 208 708 221 HOH HOH . E 5 HOH A 209 709 165 HOH HOH . E 5 HOH A 210 710 163 HOH HOH . E 5 HOH A 211 711 162 HOH HOH . F 5 HOH B 1 101 45 HOH HOH . F 5 HOH B 2 102 8 HOH HOH . F 5 HOH B 3 103 6 HOH HOH . F 5 HOH B 4 104 126 HOH HOH . F 5 HOH B 5 105 216 HOH HOH . F 5 HOH B 6 106 73 HOH HOH . F 5 HOH B 7 107 63 HOH HOH . F 5 HOH B 8 108 123 HOH HOH . F 5 HOH B 9 109 137 HOH HOH . F 5 HOH B 10 110 93 HOH HOH . F 5 HOH B 11 111 230 HOH HOH . F 5 HOH B 12 112 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8NE . . . C 3 -15.069 26.985 -24.837 0.88 40.59 ? C1 8NE 401 A 1 HETATM 2 C C2 8NE . . . C 3 -14.004 27.19 -25.693 0.88 42.38 ? C2 8NE 401 A 1 HETATM 3 C C3 8NE . . . C 3 -13.212 26.129 -26.108 0.88 44.92 ? C3 8NE 401 A 1 HETATM 4 C C4 8NE . . . C 3 -13.55 24.847 -25.694 0.88 42.4 ? C4 8NE 401 A 1 HETATM 5 C C5 8NE . . . C 3 -14.617 24.636 -24.842 0.88 40.61 ? C5 8NE 401 A 1 HETATM 6 C C6 8NE . . . C 3 -15.37 25.708 -24.374 0.88 36.89 ? C6 8NE 401 A 1 HETATM 7 C C7 8NE . . . C 3 -16.354 25.519 -23.294 0.88 28.25 ? C7 8NE 401 A 1 HETATM 8 N N8 8NE . . . C 3 -16.588 24.322 -22.815 0.88 21.72 1 N8 8NE 401 A 1 HETATM 9 N N9 8NE . . . C 3 -16.96 26.559 -22.781 0.88 19.73 ? N9 8NE 401 A 1 HETATM 10 C C10 8NE . . . C 3 -11.961 26.378 -26.879 0.88 48.55 ? C10 8NE 401 A 1 HETATM 11 F F11 8NE . . . C 3 -11.702 25.42 -27.76 0.88 48.85 ? F11 8NE 401 A 1 HETATM 12 F F12 8NE . . . C 3 -12.014 27.5 -27.564 0.88 49.19 ? F12 8NE 401 A 1 HETATM 13 F F13 8NE . . . C 3 -10.882 26.477 -26.084 0.88 50.46 ? F13 8NE 401 A 1 HETATM 14 H H1 8NE . . . C 3 -15.669 27.841 -24.53 0.88 48.71 ? H1 8NE 401 A 1 HETATM 15 H H2 8NE . . . C 3 -13.798 28.203 -26.037 0.88 50.85 ? H2 8NE 401 A 1 HETATM 16 H H4 8NE . . . C 3 -12.977 23.987 -26.036 0.88 50.89 ? H4 8NE 401 A 1 HETATM 17 H H5 8NE . . . C 3 -14.858 23.618 -24.543 0.88 48.73 ? H5 8NE 401 A 1 HETATM 18 H HN8 8NE . . . C 3 -16.096 23.513 -23.18 0.88 26.06 1 HN8 8NE 401 A 1 HETATM 19 H HN9 8NE . . . C 3 -16.808 27.52 -23.069 0.88 23.68 ? HN9 8NE 401 A 1 HETATM 20 H HN9A 8NE . . . C 3 -17.641 26.447 -22.036 0.88 23.68 ? HN9A 8NE 401 A 1 HETATM 21 H H3 8NE . . . C 3 -17.249 24.113 -22.074 0.88 26.06 1 H3 8NE 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #