data_5N3E # _model_server_result.job_id ZySvpIoaj70e9HBJQ-N4_g _model_server_result.datetime_utc '2024-11-22 08:00:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5N3E # _exptl.entry_id 5N3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N3E _cell.length_a 58.631 _cell.length_b 72.297 _cell.length_c 108.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 105 n n S C1 DMS sing 106 n n S C2 DMS sing 107 n n C1 H11 DMS sing 108 n n C1 H12 DMS sing 109 n n C1 H13 DMS sing 110 n n C2 H21 DMS sing 111 n n C2 H22 DMS sing 112 n n C2 H23 DMS sing 113 n n # _atom_sites.entry_id 5N3E _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 46L A 1 401 1 46L XXX . D 4 MPD A 1 402 1 MPD MPD . E 5 DMS A 1 403 1 DMS DMS . F 6 HOH A 1 501 252 HOH HOH . F 6 HOH A 2 502 220 HOH HOH . F 6 HOH A 3 503 135 HOH HOH . F 6 HOH A 4 504 233 HOH HOH . F 6 HOH A 5 505 189 HOH HOH . F 6 HOH A 6 506 168 HOH HOH . F 6 HOH A 7 507 232 HOH HOH . F 6 HOH A 8 508 80 HOH HOH . F 6 HOH A 9 509 68 HOH HOH . F 6 HOH A 10 510 31 HOH HOH . F 6 HOH A 11 511 212 HOH HOH . F 6 HOH A 12 512 182 HOH HOH . F 6 HOH A 13 513 102 HOH HOH . F 6 HOH A 14 514 264 HOH HOH . F 6 HOH A 15 515 258 HOH HOH . F 6 HOH A 16 516 245 HOH HOH . F 6 HOH A 17 517 124 HOH HOH . F 6 HOH A 18 518 121 HOH HOH . F 6 HOH A 19 519 34 HOH HOH . F 6 HOH A 20 520 111 HOH HOH . F 6 HOH A 21 521 29 HOH HOH . F 6 HOH A 22 522 118 HOH HOH . F 6 HOH A 23 523 113 HOH HOH . F 6 HOH A 24 524 107 HOH HOH . F 6 HOH A 25 525 11 HOH HOH . F 6 HOH A 26 526 95 HOH HOH . F 6 HOH A 27 527 139 HOH HOH . F 6 HOH A 28 528 72 HOH HOH . F 6 HOH A 29 529 267 HOH HOH . F 6 HOH A 30 530 179 HOH HOH . F 6 HOH A 31 531 123 HOH HOH . F 6 HOH A 32 532 110 HOH HOH . F 6 HOH A 33 533 53 HOH HOH . F 6 HOH A 34 534 259 HOH HOH . F 6 HOH A 35 535 78 HOH HOH . F 6 HOH A 36 536 76 HOH HOH . F 6 HOH A 37 537 38 HOH HOH . F 6 HOH A 38 538 174 HOH HOH . F 6 HOH A 39 539 6 HOH HOH . F 6 HOH A 40 540 49 HOH HOH . F 6 HOH A 41 541 39 HOH HOH . F 6 HOH A 42 542 20 HOH HOH . F 6 HOH A 43 543 77 HOH HOH . F 6 HOH A 44 544 66 HOH HOH . F 6 HOH A 45 545 33 HOH HOH . F 6 HOH A 46 546 117 HOH HOH . F 6 HOH A 47 547 100 HOH HOH . F 6 HOH A 48 548 131 HOH HOH . F 6 HOH A 49 549 83 HOH HOH . F 6 HOH A 50 550 25 HOH HOH . F 6 HOH A 51 551 159 HOH HOH . F 6 HOH A 52 552 141 HOH HOH . F 6 HOH A 53 553 17 HOH HOH . F 6 HOH A 54 554 163 HOH HOH . F 6 HOH A 55 555 30 HOH HOH . F 6 HOH A 56 556 12 HOH HOH . F 6 HOH A 57 557 97 HOH HOH . F 6 HOH A 58 558 71 HOH HOH . F 6 HOH A 59 559 43 HOH HOH . F 6 HOH A 60 560 45 HOH HOH . F 6 HOH A 61 561 149 HOH HOH . F 6 HOH A 62 562 58 HOH HOH . F 6 HOH A 63 563 86 HOH HOH . F 6 HOH A 64 564 145 HOH HOH . F 6 HOH A 65 565 89 HOH HOH . F 6 HOH A 66 566 88 HOH HOH . F 6 HOH A 67 567 32 HOH HOH . F 6 HOH A 68 568 16 HOH HOH . F 6 HOH A 69 569 188 HOH HOH . F 6 HOH A 70 570 65 HOH HOH . F 6 HOH A 71 571 104 HOH HOH . F 6 HOH A 72 572 8 HOH HOH . F 6 HOH A 73 573 47 HOH HOH . F 6 HOH A 74 574 5 HOH HOH . F 6 HOH A 75 575 26 HOH HOH . F 6 HOH A 76 576 162 HOH HOH . F 6 HOH A 77 577 69 HOH HOH . F 6 HOH A 78 578 166 HOH HOH . F 6 HOH A 79 579 50 HOH HOH . F 6 HOH A 80 580 64 HOH HOH . F 6 HOH A 81 581 27 HOH HOH . F 6 HOH A 82 582 150 HOH HOH . F 6 HOH A 83 583 2 HOH HOH . F 6 HOH A 84 584 85 HOH HOH . F 6 HOH A 85 585 44 HOH HOH . F 6 HOH A 86 586 54 HOH HOH . F 6 HOH A 87 587 23 HOH HOH . F 6 HOH A 88 588 10 HOH HOH . F 6 HOH A 89 589 48 HOH HOH . F 6 HOH A 90 590 240 HOH HOH . F 6 HOH A 91 591 173 HOH HOH . F 6 HOH A 92 592 109 HOH HOH . F 6 HOH A 93 593 151 HOH HOH . F 6 HOH A 94 594 19 HOH HOH . F 6 HOH A 95 595 84 HOH HOH . F 6 HOH A 96 596 1 HOH HOH . F 6 HOH A 97 597 242 HOH HOH . F 6 HOH A 98 598 216 HOH HOH . F 6 HOH A 99 599 22 HOH HOH . F 6 HOH A 100 600 24 HOH HOH . F 6 HOH A 101 601 140 HOH HOH . F 6 HOH A 102 602 70 HOH HOH . F 6 HOH A 103 603 81 HOH HOH . F 6 HOH A 104 604 57 HOH HOH . F 6 HOH A 105 605 157 HOH HOH . F 6 HOH A 106 606 63 HOH HOH . F 6 HOH A 107 607 37 HOH HOH . F 6 HOH A 108 608 122 HOH HOH . F 6 HOH A 109 609 105 HOH HOH . F 6 HOH A 110 610 14 HOH HOH . F 6 HOH A 111 611 169 HOH HOH . F 6 HOH A 112 612 231 HOH HOH . F 6 HOH A 113 613 91 HOH HOH . F 6 HOH A 114 614 249 HOH HOH . F 6 HOH A 115 615 235 HOH HOH . F 6 HOH A 116 616 134 HOH HOH . F 6 HOH A 117 617 226 HOH HOH . F 6 HOH A 118 618 230 HOH HOH . F 6 HOH A 119 619 148 HOH HOH . F 6 HOH A 120 620 156 HOH HOH . F 6 HOH A 121 621 254 HOH HOH . F 6 HOH A 122 622 247 HOH HOH . F 6 HOH A 123 623 52 HOH HOH . F 6 HOH A 124 624 227 HOH HOH . F 6 HOH A 125 625 112 HOH HOH . F 6 HOH A 126 626 87 HOH HOH . F 6 HOH A 127 627 160 HOH HOH . F 6 HOH A 128 628 144 HOH HOH . F 6 HOH A 129 629 225 HOH HOH . F 6 HOH A 130 630 172 HOH HOH . F 6 HOH A 131 631 167 HOH HOH . F 6 HOH A 132 632 130 HOH HOH . F 6 HOH A 133 633 75 HOH HOH . F 6 HOH A 134 634 265 HOH HOH . F 6 HOH A 135 635 253 HOH HOH . F 6 HOH A 136 636 60 HOH HOH . F 6 HOH A 137 637 103 HOH HOH . F 6 HOH A 138 638 161 HOH HOH . F 6 HOH A 139 639 90 HOH HOH . F 6 HOH A 140 640 218 HOH HOH . F 6 HOH A 141 641 185 HOH HOH . F 6 HOH A 142 642 234 HOH HOH . F 6 HOH A 143 643 255 HOH HOH . F 6 HOH A 144 644 99 HOH HOH . F 6 HOH A 145 645 92 HOH HOH . F 6 HOH A 146 646 208 HOH HOH . F 6 HOH A 147 647 106 HOH HOH . F 6 HOH A 148 648 9 HOH HOH . F 6 HOH A 149 649 126 HOH HOH . F 6 HOH A 150 650 73 HOH HOH . F 6 HOH A 151 651 40 HOH HOH . F 6 HOH A 152 652 7 HOH HOH . F 6 HOH A 153 653 202 HOH HOH . F 6 HOH A 154 654 183 HOH HOH . F 6 HOH A 155 655 28 HOH HOH . F 6 HOH A 156 656 250 HOH HOH . F 6 HOH A 157 657 21 HOH HOH . F 6 HOH A 158 658 62 HOH HOH . F 6 HOH A 159 659 18 HOH HOH . F 6 HOH A 160 660 204 HOH HOH . F 6 HOH A 161 661 129 HOH HOH . F 6 HOH A 162 662 243 HOH HOH . F 6 HOH A 163 663 223 HOH HOH . F 6 HOH A 164 664 41 HOH HOH . F 6 HOH A 165 665 61 HOH HOH . F 6 HOH A 166 666 36 HOH HOH . F 6 HOH A 167 667 229 HOH HOH . F 6 HOH A 168 668 263 HOH HOH . F 6 HOH A 169 669 236 HOH HOH . F 6 HOH A 170 670 155 HOH HOH . F 6 HOH A 171 671 238 HOH HOH . F 6 HOH A 172 672 114 HOH HOH . F 6 HOH A 173 673 116 HOH HOH . F 6 HOH A 174 674 56 HOH HOH . F 6 HOH A 175 675 196 HOH HOH . F 6 HOH A 176 676 177 HOH HOH . F 6 HOH A 177 677 46 HOH HOH . F 6 HOH A 178 678 184 HOH HOH . F 6 HOH A 179 679 67 HOH HOH . F 6 HOH A 180 680 108 HOH HOH . F 6 HOH A 181 681 119 HOH HOH . F 6 HOH A 182 682 256 HOH HOH . F 6 HOH A 183 683 244 HOH HOH . F 6 HOH A 184 684 115 HOH HOH . F 6 HOH A 185 685 152 HOH HOH . F 6 HOH A 186 686 146 HOH HOH . F 6 HOH A 187 687 120 HOH HOH . F 6 HOH A 188 688 260 HOH HOH . F 6 HOH A 189 689 13 HOH HOH . F 6 HOH A 190 690 228 HOH HOH . F 6 HOH A 191 691 175 HOH HOH . F 6 HOH A 192 692 217 HOH HOH . F 6 HOH A 193 693 195 HOH HOH . F 6 HOH A 194 694 224 HOH HOH . F 6 HOH A 195 695 133 HOH HOH . F 6 HOH A 196 696 215 HOH HOH . F 6 HOH A 197 697 262 HOH HOH . F 6 HOH A 198 698 51 HOH HOH . F 6 HOH A 199 699 181 HOH HOH . F 6 HOH A 200 700 222 HOH HOH . F 6 HOH A 201 701 98 HOH HOH . F 6 HOH A 202 702 261 HOH HOH . F 6 HOH A 203 703 246 HOH HOH . F 6 HOH A 204 704 201 HOH HOH . F 6 HOH A 205 705 138 HOH HOH . F 6 HOH A 206 706 197 HOH HOH . F 6 HOH A 207 707 248 HOH HOH . F 6 HOH A 208 708 137 HOH HOH . F 6 HOH A 209 709 239 HOH HOH . F 6 HOH A 210 710 164 HOH HOH . F 6 HOH A 211 711 241 HOH HOH . F 6 HOH A 212 712 125 HOH HOH . F 6 HOH A 213 713 101 HOH HOH . F 6 HOH A 214 714 35 HOH HOH . F 6 HOH A 215 715 214 HOH HOH . F 6 HOH A 216 716 257 HOH HOH . F 6 HOH A 217 717 221 HOH HOH . F 6 HOH A 218 718 170 HOH HOH . F 6 HOH A 219 719 142 HOH HOH . F 6 HOH A 220 720 132 HOH HOH . F 6 HOH A 221 721 93 HOH HOH . F 6 HOH A 222 722 178 HOH HOH . F 6 HOH A 223 723 154 HOH HOH . F 6 HOH A 224 724 176 HOH HOH . F 6 HOH A 225 725 165 HOH HOH . F 6 HOH A 226 726 180 HOH HOH . F 6 HOH A 227 727 191 HOH HOH . G 6 HOH B 1 101 3 HOH HOH . G 6 HOH B 2 102 15 HOH HOH . G 6 HOH B 3 103 55 HOH HOH . G 6 HOH B 4 104 4 HOH HOH . G 6 HOH B 5 105 94 HOH HOH . G 6 HOH B 6 106 266 HOH HOH . G 6 HOH B 7 107 171 HOH HOH . G 6 HOH B 8 108 82 HOH HOH . G 6 HOH B 9 109 42 HOH HOH . G 6 HOH B 10 110 59 HOH HOH . G 6 HOH B 11 111 190 HOH HOH . G 6 HOH B 12 112 79 HOH HOH . G 6 HOH B 13 113 158 HOH HOH . G 6 HOH B 14 114 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 5 -13.403 3.169 -27.644 1 83.79 ? S DMS 403 A 1 HETATM 2 O O DMS . . . E 5 -14.761 2.571 -27.836 1 82.52 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . E 5 -12.598 3.391 -29.254 1 83.16 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . E 5 -13.581 4.906 -27.19 1 83.02 ? C2 DMS 403 A 1 HETATM 5 H H11 DMS . . . E 5 -11.676 3.894 -29.121 1 99.79 ? H11 DMS 403 A 1 HETATM 6 H H12 DMS . . . E 5 -12.423 2.445 -29.695 1 99.79 ? H12 DMS 403 A 1 HETATM 7 H H13 DMS . . . E 5 -13.225 3.965 -29.886 1 99.79 ? H13 DMS 403 A 1 HETATM 8 H H21 DMS . . . E 5 -14.056 4.978 -26.247 1 99.63 ? H21 DMS 403 A 1 HETATM 9 H H22 DMS . . . E 5 -12.624 5.357 -27.138 1 99.63 ? H22 DMS 403 A 1 HETATM 10 H H23 DMS . . . E 5 -14.166 5.403 -27.919 1 99.63 ? H23 DMS 403 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #