data_5N4F
#
_model_server_result.job_id            ENUiur189K5rzXbmVsSM0Q 
_model_server_result.datetime_utc      '2025-09-21 10:31:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n4f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    5N4F 
#
_exptl.entry_id    5N4F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N4F 
_cell.length_a            90.89 
_cell.length_b            105.62 
_cell.length_c            86.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N4F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5N4F 
_atom_sites.fract_transf_matrix[1][1]    0.011002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0115 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 801 1 GOL GOL . 
C 2 GOL A 1 802 2 GOL GOL . 
D 3 HOH A 1 901 129 HOH HOH . 
D 3 HOH A 2 902 92 HOH HOH . 
D 3 HOH A 3 903 19 HOH HOH . 
D 3 HOH A 4 904 121 HOH HOH . 
D 3 HOH A 5 905 51 HOH HOH . 
D 3 HOH A 6 906 28 HOH HOH . 
D 3 HOH A 7 907 56 HOH HOH . 
D 3 HOH A 8 908 95 HOH HOH . 
D 3 HOH A 9 909 16 HOH HOH . 
D 3 HOH A 10 910 62 HOH HOH . 
D 3 HOH A 11 911 24 HOH HOH . 
D 3 HOH A 12 912 20 HOH HOH . 
D 3 HOH A 13 913 10 HOH HOH . 
D 3 HOH A 14 914 31 HOH HOH . 
D 3 HOH A 15 915 116 HOH HOH . 
D 3 HOH A 16 916 23 HOH HOH . 
D 3 HOH A 17 917 117 HOH HOH . 
D 3 HOH A 18 918 30 HOH HOH . 
D 3 HOH A 19 919 11 HOH HOH . 
D 3 HOH A 20 920 54 HOH HOH . 
D 3 HOH A 21 921 25 HOH HOH . 
D 3 HOH A 22 922 81 HOH HOH . 
D 3 HOH A 23 923 128 HOH HOH . 
D 3 HOH A 24 924 122 HOH HOH . 
D 3 HOH A 25 925 36 HOH HOH . 
D 3 HOH A 26 926 107 HOH HOH . 
D 3 HOH A 27 927 5 HOH HOH . 
D 3 HOH A 28 928 93 HOH HOH . 
D 3 HOH A 29 929 15 HOH HOH . 
D 3 HOH A 30 930 97 HOH HOH . 
D 3 HOH A 31 931 124 HOH HOH . 
D 3 HOH A 32 932 35 HOH HOH . 
D 3 HOH A 33 933 1 HOH HOH . 
D 3 HOH A 34 934 109 HOH HOH . 
D 3 HOH A 35 935 104 HOH HOH . 
D 3 HOH A 36 936 5 HOH HOH . 
D 3 HOH A 37 937 54 HOH HOH . 
D 3 HOH A 38 938 1 HOH HOH . 
D 3 HOH A 39 939 38 HOH HOH . 
D 3 HOH A 40 940 70 HOH HOH . 
D 3 HOH A 41 941 9 HOH HOH . 
D 3 HOH A 42 942 108 HOH HOH . 
D 3 HOH A 43 943 17 HOH HOH . 
D 3 HOH A 44 944 46 HOH HOH . 
D 3 HOH A 45 945 108 HOH HOH . 
D 3 HOH A 46 946 60 HOH HOH . 
D 3 HOH A 47 947 7 HOH HOH . 
D 3 HOH A 48 948 97 HOH HOH . 
D 3 HOH A 49 949 73 HOH HOH . 
D 3 HOH A 50 950 43 HOH HOH . 
D 3 HOH A 51 951 68 HOH HOH . 
D 3 HOH A 52 952 41 HOH HOH . 
D 3 HOH A 53 953 44 HOH HOH . 
D 3 HOH A 54 954 64 HOH HOH . 
D 3 HOH A 55 955 15 HOH HOH . 
D 3 HOH A 56 956 39 HOH HOH . 
D 3 HOH A 57 957 85 HOH HOH . 
D 3 HOH A 58 958 40 HOH HOH . 
D 3 HOH A 59 959 31 HOH HOH . 
D 3 HOH A 60 960 72 HOH HOH . 
D 3 HOH A 61 961 127 HOH HOH . 
D 3 HOH A 62 962 21 HOH HOH . 
D 3 HOH A 63 963 22 HOH HOH . 
D 3 HOH A 64 964 29 HOH HOH . 
D 3 HOH A 65 965 37 HOH HOH . 
D 3 HOH A 66 966 33 HOH HOH . 
D 3 HOH A 67 967 66 HOH HOH . 
D 3 HOH A 68 968 27 HOH HOH . 
D 3 HOH A 69 969 103 HOH HOH . 
D 3 HOH A 70 970 48 HOH HOH . 
D 3 HOH A 71 971 39 HOH HOH . 
D 3 HOH A 72 972 69 HOH HOH . 
D 3 HOH A 73 973 52 HOH HOH . 
D 3 HOH A 74 974 45 HOH HOH . 
D 3 HOH A 75 975 2 HOH HOH . 
D 3 HOH A 76 976 55 HOH HOH . 
D 3 HOH A 77 977 101 HOH HOH . 
D 3 HOH A 78 978 6 HOH HOH . 
D 3 HOH A 79 979 19 HOH HOH . 
D 3 HOH A 80 980 3 HOH HOH . 
D 3 HOH A 81 981 82 HOH HOH . 
D 3 HOH A 82 982 241 HOH HOH . 
D 3 HOH A 83 983 65 HOH HOH . 
D 3 HOH A 84 984 111 HOH HOH . 
D 3 HOH A 85 985 89 HOH HOH . 
D 3 HOH A 86 986 112 HOH HOH . 
D 3 HOH A 87 987 91 HOH HOH . 
D 3 HOH A 88 988 118 HOH HOH . 
D 3 HOH A 89 989 26 HOH HOH . 
D 3 HOH A 90 990 63 HOH HOH . 
D 3 HOH A 91 991 8 HOH HOH . 
D 3 HOH A 92 992 151 HOH HOH . 
D 3 HOH A 93 993 148 HOH HOH . 
D 3 HOH A 94 994 113 HOH HOH . 
D 3 HOH A 95 995 79 HOH HOH . 
D 3 HOH A 96 996 18 HOH HOH . 
D 3 HOH A 97 997 119 HOH HOH . 
D 3 HOH A 98 998 4 HOH HOH . 
D 3 HOH A 99 999 75 HOH HOH . 
D 3 HOH A 100 1000 17 HOH HOH . 
D 3 HOH A 101 1001 123 HOH HOH . 
D 3 HOH A 102 1002 47 HOH HOH . 
D 3 HOH A 103 1003 88 HOH HOH . 
D 3 HOH A 104 1004 93 HOH HOH . 
D 3 HOH A 105 1005 77 HOH HOH . 
D 3 HOH A 106 1006 120 HOH HOH . 
D 3 HOH A 107 1007 32 HOH HOH . 
D 3 HOH A 108 1008 94 HOH HOH . 
D 3 HOH A 109 1009 67 HOH HOH . 
D 3 HOH A 110 1010 80 HOH HOH . 
D 3 HOH A 111 1011 8 HOH HOH . 
D 3 HOH A 112 1012 106 HOH HOH . 
D 3 HOH A 113 1013 13 HOH HOH . 
D 3 HOH A 114 1014 100 HOH HOH . 
D 3 HOH A 115 1015 80 HOH HOH . 
D 3 HOH A 116 1016 91 HOH HOH . 
D 3 HOH A 117 1017 58 HOH HOH . 
D 3 HOH A 118 1018 85 HOH HOH . 
D 3 HOH A 119 1019 109 HOH HOH . 
D 3 HOH A 120 1020 11 HOH HOH . 
D 3 HOH A 121 1021 114 HOH HOH . 
D 3 HOH A 122 1022 86 HOH HOH . 
D 3 HOH A 123 1023 71 HOH HOH . 
D 3 HOH A 124 1024 84 HOH HOH . 
D 3 HOH A 125 1025 35 HOH HOH . 
D 3 HOH A 126 1026 7 HOH HOH . 
D 3 HOH A 127 1027 21 HOH HOH . 
D 3 HOH A 128 1028 45 HOH HOH . 
D 3 HOH A 129 1029 105 HOH HOH . 
D 3 HOH A 130 1030 106 HOH HOH . 
D 3 HOH A 131 1031 71 HOH HOH . 
D 3 HOH A 132 1032 14 HOH HOH . 
D 3 HOH A 133 1033 144 HOH HOH . 
D 3 HOH A 134 1034 76 HOH HOH . 
D 3 HOH A 135 1035 33 HOH HOH . 
D 3 HOH A 136 1036 27 HOH HOH . 
D 3 HOH A 137 1037 46 HOH HOH . 
D 3 HOH A 138 1038 112 HOH HOH . 
D 3 HOH A 139 1039 50 HOH HOH . 
D 3 HOH A 140 1040 42 HOH HOH . 
D 3 HOH A 141 1041 13 HOH HOH . 
D 3 HOH A 142 1042 120 HOH HOH . 
D 3 HOH A 143 1043 102 HOH HOH . 
D 3 HOH A 144 1044 90 HOH HOH . 
D 3 HOH A 145 1045 66 HOH HOH . 
D 3 HOH A 146 1046 57 HOH HOH . 
D 3 HOH A 147 1047 126 HOH HOH . 
D 3 HOH A 148 1048 103 HOH HOH . 
D 3 HOH A 149 1049 130 HOH HOH . 
D 3 HOH A 150 1050 171 HOH HOH . 
D 3 HOH A 151 1051 96 HOH HOH . 
D 3 HOH A 152 1052 149 HOH HOH . 
D 3 HOH A 153 1053 72 HOH HOH . 
D 3 HOH A 154 1054 12 HOH HOH . 
D 3 HOH A 155 1055 73 HOH HOH . 
D 3 HOH A 156 1056 68 HOH HOH . 
D 3 HOH A 157 1057 90 HOH HOH . 
D 3 HOH A 158 1058 74 HOH HOH . 
D 3 HOH A 159 1059 53 HOH HOH . 
D 3 HOH A 160 1060 76 HOH HOH . 
D 3 HOH A 161 1061 87 HOH HOH . 
D 3 HOH A 162 1062 92 HOH HOH . 
D 3 HOH A 163 1063 154 HOH HOH . 
D 3 HOH A 164 1064 126 HOH HOH . 
D 3 HOH A 165 1065 203 HOH HOH . 
D 3 HOH A 166 1066 246 HOH HOH . 
D 3 HOH A 167 1067 131 HOH HOH . 
D 3 HOH A 168 1068 70 HOH HOH . 
D 3 HOH A 169 1069 125 HOH HOH . 
D 3 HOH A 170 1070 61 HOH HOH . 
D 3 HOH A 171 1071 5 HOH HOH . 
D 3 HOH A 172 1072 139 HOH HOH . 
D 3 HOH A 173 1073 237 HOH HOH . 
D 3 HOH A 174 1074 238 HOH HOH . 
D 3 HOH A 175 1075 67 HOH HOH . 
D 3 HOH A 176 1076 1 HOH HOH . 
D 3 HOH A 177 1077 131 HOH HOH . 
D 3 HOH A 178 1078 115 HOH HOH . 
D 3 HOH A 179 1079 7 HOH HOH . 
D 3 HOH A 180 1080 14 HOH HOH . 
D 3 HOH A 181 1081 73 HOH HOH . 
D 3 HOH A 182 1082 110 HOH HOH . 
D 3 HOH A 183 1083 78 HOH HOH . 
D 3 HOH A 184 1084 115 HOH HOH . 
D 3 HOH A 185 1085 177 HOH HOH . 
D 3 HOH A 186 1086 139 HOH HOH . 
D 3 HOH A 187 1087 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 84.335 39.588 73.04 1 34.58 ? C1 GOL 802 A 1 
HETATM 2 O O1 GOL . . . C 2 83.931 40.065 74.338 1 33.72 ? O1 GOL 802 A 1 
HETATM 3 C C2 GOL . . . C 2 85.682 40.184 72.614 1 32.91 ? C2 GOL 802 A 1 
HETATM 4 O O2 GOL . . . C 2 86.666 39.858 73.605 1 26.48 ? O2 GOL 802 A 1 
HETATM 5 C C3 GOL . . . C 2 86.161 39.696 71.234 1 34.39 ? C3 GOL 802 A 1 
HETATM 6 O O3 GOL . . . C 2 85.323 38.68 70.647 1 34.65 ? O3 GOL 802 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#