data_5N4M # _model_server_result.job_id l7C7I2SRMpDhtTIBY59MXA _model_server_result.datetime_utc '2024-11-01 23:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5N4M # _exptl.entry_id 5N4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N4M _cell.length_a 64.997 _cell.length_b 64.997 _cell.length_c 101.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 253 n n C1 O2 PLM doub 254 n n C1 C2 PLM sing 255 n n O1 H PLM sing 256 n n C2 C3 PLM sing 257 n n C2 H21 PLM sing 258 n n C2 H22 PLM sing 259 n n C3 C4 PLM sing 260 n n C3 H31 PLM sing 261 n n C3 H32 PLM sing 262 n n C4 C5 PLM sing 263 n n C4 H41 PLM sing 264 n n C4 H42 PLM sing 265 n n C5 C6 PLM sing 266 n n C5 H51 PLM sing 267 n n C5 H52 PLM sing 268 n n C6 C7 PLM sing 269 n n C6 H61 PLM sing 270 n n C6 H62 PLM sing 271 n n C7 C8 PLM sing 272 n n C7 H71 PLM sing 273 n n C7 H72 PLM sing 274 n n C8 C9 PLM sing 275 n n C8 H81 PLM sing 276 n n C8 H82 PLM sing 277 n n C9 CA PLM sing 278 n n C9 H91 PLM sing 279 n n C9 H92 PLM sing 280 n n CA CB PLM sing 281 n n CA HA1 PLM sing 282 n n CA HA2 PLM sing 283 n n CB CC PLM sing 284 n n CB HB1 PLM sing 285 n n CB HB2 PLM sing 286 n n CC CD PLM sing 287 n n CC HC1 PLM sing 288 n n CC HC2 PLM sing 289 n n CD CE PLM sing 290 n n CD HD1 PLM sing 291 n n CD HD2 PLM sing 292 n n CE CF PLM sing 293 n n CE HE1 PLM sing 294 n n CE HE2 PLM sing 295 n n CF CG PLM sing 296 n n CF HF1 PLM sing 297 n n CF HF2 PLM sing 298 n n CG HG1 PLM sing 299 n n CG HG2 PLM sing 300 n n CG HG3 PLM sing 301 n n # _atom_sites.entry_id 5N4M _atom_sites.fract_transf_matrix[1][1] 0.015385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 1 PLM PLM . C 3 VCA A 1 202 1 VCA VCA . D 4 MLT A 1 203 1 MLT MLT . E 5 HOH A 1 301 125 HOH HOH . E 5 HOH A 2 302 82 HOH HOH . E 5 HOH A 3 303 59 HOH HOH . E 5 HOH A 4 304 153 HOH HOH . E 5 HOH A 5 305 45 HOH HOH . E 5 HOH A 6 306 38 HOH HOH . E 5 HOH A 7 307 47 HOH HOH . E 5 HOH A 8 308 155 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 118 HOH HOH . E 5 HOH A 11 311 17 HOH HOH . E 5 HOH A 12 312 115 HOH HOH . E 5 HOH A 13 313 34 HOH HOH . E 5 HOH A 14 314 50 HOH HOH . E 5 HOH A 15 315 58 HOH HOH . E 5 HOH A 16 316 93 HOH HOH . E 5 HOH A 17 317 84 HOH HOH . E 5 HOH A 18 318 36 HOH HOH . E 5 HOH A 19 319 66 HOH HOH . E 5 HOH A 20 320 22 HOH HOH . E 5 HOH A 21 321 12 HOH HOH . E 5 HOH A 22 322 4 HOH HOH . E 5 HOH A 23 323 90 HOH HOH . E 5 HOH A 24 324 13 HOH HOH . E 5 HOH A 25 325 80 HOH HOH . E 5 HOH A 26 326 61 HOH HOH . E 5 HOH A 27 327 100 HOH HOH . E 5 HOH A 28 328 24 HOH HOH . E 5 HOH A 29 329 154 HOH HOH . E 5 HOH A 30 330 57 HOH HOH . E 5 HOH A 31 331 151 HOH HOH . E 5 HOH A 32 332 42 HOH HOH . E 5 HOH A 33 333 89 HOH HOH . E 5 HOH A 34 334 33 HOH HOH . E 5 HOH A 35 335 65 HOH HOH . E 5 HOH A 36 336 72 HOH HOH . E 5 HOH A 37 337 116 HOH HOH . E 5 HOH A 38 338 27 HOH HOH . E 5 HOH A 39 339 19 HOH HOH . E 5 HOH A 40 340 128 HOH HOH . E 5 HOH A 41 341 43 HOH HOH . E 5 HOH A 42 342 51 HOH HOH . E 5 HOH A 43 343 21 HOH HOH . E 5 HOH A 44 344 29 HOH HOH . E 5 HOH A 45 345 102 HOH HOH . E 5 HOH A 46 346 119 HOH HOH . E 5 HOH A 47 347 1 HOH HOH . E 5 HOH A 48 348 6 HOH HOH . E 5 HOH A 49 349 8 HOH HOH . E 5 HOH A 50 350 44 HOH HOH . E 5 HOH A 51 351 11 HOH HOH . E 5 HOH A 52 352 7 HOH HOH . E 5 HOH A 53 353 32 HOH HOH . E 5 HOH A 54 354 48 HOH HOH . E 5 HOH A 55 355 46 HOH HOH . E 5 HOH A 56 356 39 HOH HOH . E 5 HOH A 57 357 107 HOH HOH . E 5 HOH A 58 358 18 HOH HOH . E 5 HOH A 59 359 64 HOH HOH . E 5 HOH A 60 360 91 HOH HOH . E 5 HOH A 61 361 131 HOH HOH . E 5 HOH A 62 362 68 HOH HOH . E 5 HOH A 63 363 109 HOH HOH . E 5 HOH A 64 364 3 HOH HOH . E 5 HOH A 65 365 77 HOH HOH . E 5 HOH A 66 366 120 HOH HOH . E 5 HOH A 67 367 26 HOH HOH . E 5 HOH A 68 368 97 HOH HOH . E 5 HOH A 69 369 73 HOH HOH . E 5 HOH A 70 370 49 HOH HOH . E 5 HOH A 71 371 41 HOH HOH . E 5 HOH A 72 372 74 HOH HOH . E 5 HOH A 73 373 71 HOH HOH . E 5 HOH A 74 374 30 HOH HOH . E 5 HOH A 75 375 2 HOH HOH . E 5 HOH A 76 376 28 HOH HOH . E 5 HOH A 77 377 63 HOH HOH . E 5 HOH A 78 378 5 HOH HOH . E 5 HOH A 79 379 94 HOH HOH . E 5 HOH A 80 380 67 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 96 HOH HOH . E 5 HOH A 83 383 14 HOH HOH . E 5 HOH A 84 384 83 HOH HOH . E 5 HOH A 85 385 56 HOH HOH . E 5 HOH A 86 386 25 HOH HOH . E 5 HOH A 87 387 99 HOH HOH . E 5 HOH A 88 388 53 HOH HOH . E 5 HOH A 89 389 140 HOH HOH . E 5 HOH A 90 390 37 HOH HOH . E 5 HOH A 91 391 62 HOH HOH . E 5 HOH A 92 392 20 HOH HOH . E 5 HOH A 93 393 69 HOH HOH . E 5 HOH A 94 394 111 HOH HOH . E 5 HOH A 95 395 54 HOH HOH . E 5 HOH A 96 396 101 HOH HOH . E 5 HOH A 97 397 137 HOH HOH . E 5 HOH A 98 398 31 HOH HOH . E 5 HOH A 99 399 16 HOH HOH . E 5 HOH A 100 400 52 HOH HOH . E 5 HOH A 101 401 133 HOH HOH . E 5 HOH A 102 402 10 HOH HOH . E 5 HOH A 103 403 129 HOH HOH . E 5 HOH A 104 404 55 HOH HOH . E 5 HOH A 105 405 23 HOH HOH . E 5 HOH A 106 406 79 HOH HOH . E 5 HOH A 107 407 40 HOH HOH . E 5 HOH A 108 408 127 HOH HOH . E 5 HOH A 109 409 142 HOH HOH . E 5 HOH A 110 410 135 HOH HOH . E 5 HOH A 111 411 110 HOH HOH . E 5 HOH A 112 412 86 HOH HOH . E 5 HOH A 113 413 104 HOH HOH . E 5 HOH A 114 414 123 HOH HOH . E 5 HOH A 115 415 138 HOH HOH . E 5 HOH A 116 416 149 HOH HOH . E 5 HOH A 117 417 76 HOH HOH . E 5 HOH A 118 418 70 HOH HOH . E 5 HOH A 119 419 156 HOH HOH . E 5 HOH A 120 420 141 HOH HOH . E 5 HOH A 121 421 126 HOH HOH . E 5 HOH A 122 422 139 HOH HOH . E 5 HOH A 123 423 15 HOH HOH . E 5 HOH A 124 424 105 HOH HOH . E 5 HOH A 125 425 117 HOH HOH . E 5 HOH A 126 426 144 HOH HOH . E 5 HOH A 127 427 87 HOH HOH . E 5 HOH A 128 428 145 HOH HOH . E 5 HOH A 129 429 148 HOH HOH . E 5 HOH A 130 430 95 HOH HOH . E 5 HOH A 131 431 124 HOH HOH . E 5 HOH A 132 432 88 HOH HOH . E 5 HOH A 133 433 35 HOH HOH . E 5 HOH A 134 434 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . A . B 2 -2.641 23.678 0.503 0.6 37.92 ? C1 PLM 201 A 1 HETATM 2 O O1 PLM . A . B 2 -3.027 24.588 1.29 0.6 39.21 ? O1 PLM 201 A 1 HETATM 3 O O2 PLM . A . B 2 -3.146 22.54 0.311 0.6 40.86 ? O2 PLM 201 A 1 HETATM 4 C C2 PLM . A . B 2 -1.367 24.034 -0.355 0.6 48.4 ? C2 PLM 201 A 1 HETATM 5 C C3 PLM . A . B 2 -1.639 24.831 -1.639 0.6 42.34 ? C3 PLM 201 A 1 HETATM 6 C C4 PLM . A . B 2 -0.452 24.93 -2.592 0.6 54.6 ? C4 PLM 201 A 1 HETATM 7 C C5 PLM . A . B 2 -0.672 25.951 -3.708 0.6 36.02 ? C5 PLM 201 A 1 HETATM 8 C C6 PLM . A . B 2 0.216 25.764 -4.952 0.6 44.17 ? C6 PLM 201 A 1 HETATM 9 C C7 PLM . A . B 2 0.594 27.075 -5.632 0.6 32.54 ? C7 PLM 201 A 1 HETATM 10 C C8 PLM . A . B 2 -0.593 28.013 -5.912 0.6 40.77 ? C8 PLM 201 A 1 HETATM 11 C C9 PLM . A . B 2 -0.516 28.671 -7.274 0.6 47.67 ? C9 PLM 201 A 1 HETATM 12 C CA PLM . A . B 2 -1.478 29.851 -7.482 0.6 40.17 ? CA PLM 201 A 1 HETATM 13 C CB PLM . A . B 2 -2.955 29.448 -7.583 0.6 32.61 ? CB PLM 201 A 1 HETATM 14 C CC PLM . A . B 2 -3.794 29.934 -6.381 0.6 48.37 ? CC PLM 201 A 1 HETATM 15 C CD PLM . A . B 2 -5.054 29.1 -6.109 0.6 44.47 ? CD PLM 201 A 1 HETATM 16 C CE PLM . A . B 2 -5.11 28.453 -4.732 0.6 52.85 ? CE PLM 201 A 1 HETATM 17 C CF PLM . A . B 2 -5.801 27.087 -4.729 0.6 45.45 ? CF PLM 201 A 1 HETATM 18 C CG PLM . A . B 2 -4.832 25.943 -4.411 0.6 54.19 ? CG PLM 201 A 1 HETATM 19 H H21 PLM . A . B 2 -0.85 23.091 -0.585 0.6 58.08 ? H21 PLM 201 A 1 HETATM 20 H H22 PLM . A . B 2 -0.683 24.595 0.302 0.6 58.08 ? H22 PLM 201 A 1 HETATM 21 H H31 PLM . A . B 2 -2.493 24.376 -2.159 0.6 50.81 ? H31 PLM 201 A 1 HETATM 22 H H32 PLM . A . B 2 -1.976 25.84 -1.364 0.6 50.81 ? H32 PLM 201 A 1 HETATM 23 H H41 PLM . A . B 2 -0.249 23.944 -3.04 0.6 65.52 ? H41 PLM 201 A 1 HETATM 24 H H42 PLM . A . B 2 0.454 25.202 -2.028 0.6 65.52 ? H42 PLM 201 A 1 HETATM 25 H H51 PLM . A . B 2 -1.729 25.917 -4.015 0.6 43.23 ? H51 PLM 201 A 1 HETATM 26 H H52 PLM . A . B 2 -0.512 26.962 -3.303 0.6 43.23 ? H52 PLM 201 A 1 HETATM 27 H H61 PLM . A . B 2 -0.301 25.115 -5.676 0.6 53 ? H61 PLM 201 A 1 HETATM 28 H H62 PLM . A . B 2 1.134 25.228 -4.664 0.6 53 ? H62 PLM 201 A 1 HETATM 29 H H71 PLM . A . B 2 1.105 26.851 -6.581 0.6 39.04 ? H71 PLM 201 A 1 HETATM 30 H H72 PLM . A . B 2 1.331 27.603 -5.01 0.6 39.04 ? H72 PLM 201 A 1 HETATM 31 H H81 PLM . A . B 2 -0.638 28.79 -5.134 0.6 48.92 ? H81 PLM 201 A 1 HETATM 32 H H82 PLM . A . B 2 -1.533 27.445 -5.835 0.6 48.92 ? H82 PLM 201 A 1 HETATM 33 H H91 PLM . A . B 2 -0.71 27.913 -8.047 0.6 57.2 ? H91 PLM 201 A 1 HETATM 34 H H92 PLM . A . B 2 0.514 29.016 -7.446 0.6 57.2 ? H92 PLM 201 A 1 HETATM 35 H HA1 PLM . A . B 2 -1.191 30.394 -8.395 0.6 48.21 ? HA1 PLM 201 A 1 HETATM 36 H HA2 PLM . A . B 2 -1.356 30.565 -6.654 0.6 48.21 ? HA2 PLM 201 A 1 HETATM 37 H HB1 PLM . A . B 2 -3.381 29.853 -8.512 0.6 39.13 ? HB1 PLM 201 A 1 HETATM 38 H HB2 PLM . A . B 2 -3.03 28.353 -7.662 0.6 39.13 ? HB2 PLM 201 A 1 HETATM 39 H HC1 PLM . A . B 2 -4.087 30.982 -6.546 0.6 58.05 ? HC1 PLM 201 A 1 HETATM 40 H HC2 PLM . A . B 2 -3.164 29.936 -5.48 0.6 58.05 ? HC2 PLM 201 A 1 HETATM 41 H HD1 PLM . A . B 2 -5.135 28.315 -6.876 0.6 53.37 ? HD1 PLM 201 A 1 HETATM 42 H HD2 PLM . A . B 2 -5.94 29.739 -6.24 0.6 53.37 ? HD2 PLM 201 A 1 HETATM 43 H HE1 PLM . A . B 2 -5.634 29.125 -4.034 0.6 63.42 ? HE1 PLM 201 A 1 HETATM 44 H HE2 PLM . A . B 2 -4.088 28.342 -4.34 0.6 63.42 ? HE2 PLM 201 A 1 HETATM 45 H HF1 PLM . A . B 2 -6.268 26.912 -5.709 0.6 54.54 ? HF1 PLM 201 A 1 HETATM 46 H HF2 PLM . A . B 2 -6.619 27.093 -3.993 0.6 54.54 ? HF2 PLM 201 A 1 HETATM 47 H HG1 PLM . A . B 2 -5.342 24.973 -4.412 0.6 65.03 ? HG1 PLM 201 A 1 HETATM 48 H HG2 PLM . A . B 2 -4.373 26.075 -3.423 0.6 65.03 ? HG2 PLM 201 A 1 HETATM 49 H HG3 PLM . A . B 2 -4.02 25.893 -5.148 0.6 65.03 ? HG3 PLM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #