data_5N4M # _model_server_result.job_id nw4onOiExbyLCoCVnjTBOg _model_server_result.datetime_utc '2024-11-23 04:19:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5N4M # _exptl.entry_id 5N4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'VACCENIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N4M _cell.length_a 64.997 _cell.length_b 64.997 _cell.length_c 101.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id VCA _chem_comp.mon_nstd_flag . _chem_comp.name 'VACCENIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(11E)-OCTADEC-11-ENOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 VCA sing 418 n n O2 HO2 VCA sing 419 n n C1 O1 VCA doub 420 n n C1 C2 VCA sing 421 n n C2 C3 VCA sing 422 n n C2 H21 VCA sing 423 n n C2 H22 VCA sing 424 n n C3 C4 VCA sing 425 n n C3 H31 VCA sing 426 n n C3 H32 VCA sing 427 n n C4 C5 VCA sing 428 n n C4 H41 VCA sing 429 n n C4 H42 VCA sing 430 n n C5 C6 VCA sing 431 n n C5 H51 VCA sing 432 n n C5 H52 VCA sing 433 n n C6 C7 VCA sing 434 n n C6 H61 VCA sing 435 n n C6 H62 VCA sing 436 n n C7 C8 VCA sing 437 n n C7 H71 VCA sing 438 n n C7 H72 VCA sing 439 n n C8 C9 VCA sing 440 n n C8 H81 VCA sing 441 n n C8 H82 VCA sing 442 n n C9 C10 VCA sing 443 n n C9 H91 VCA sing 444 n n C9 H92 VCA sing 445 n n C10 C11 VCA sing 446 n n C10 H101 VCA sing 447 n n C10 H102 VCA sing 448 n n C11 C12 VCA doub 449 z n C11 H11 VCA sing 450 n n C12 C13 VCA sing 451 n n C12 H12 VCA sing 452 n n C13 C14 VCA sing 453 n n C13 H131 VCA sing 454 n n C13 H132 VCA sing 455 n n C14 C15 VCA sing 456 n n C14 H141 VCA sing 457 n n C14 H142 VCA sing 458 n n C15 C16 VCA sing 459 n n C15 H151 VCA sing 460 n n C15 H152 VCA sing 461 n n C16 C17 VCA sing 462 n n C16 H161 VCA sing 463 n n C16 H162 VCA sing 464 n n C17 C18 VCA sing 465 n n C17 H171 VCA sing 466 n n C17 H172 VCA sing 467 n n C18 H181 VCA sing 468 n n C18 H182 VCA sing 469 n n C18 H183 VCA sing 470 n n # _atom_sites.entry_id 5N4M _atom_sites.fract_transf_matrix[1][1] 0.015385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 1 PLM PLM . C 3 VCA A 1 202 1 VCA VCA . D 4 MLT A 1 203 1 MLT MLT . E 5 HOH A 1 301 125 HOH HOH . E 5 HOH A 2 302 82 HOH HOH . E 5 HOH A 3 303 59 HOH HOH . E 5 HOH A 4 304 153 HOH HOH . E 5 HOH A 5 305 45 HOH HOH . E 5 HOH A 6 306 38 HOH HOH . E 5 HOH A 7 307 47 HOH HOH . E 5 HOH A 8 308 155 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 118 HOH HOH . E 5 HOH A 11 311 17 HOH HOH . E 5 HOH A 12 312 115 HOH HOH . E 5 HOH A 13 313 34 HOH HOH . E 5 HOH A 14 314 50 HOH HOH . E 5 HOH A 15 315 58 HOH HOH . E 5 HOH A 16 316 93 HOH HOH . E 5 HOH A 17 317 84 HOH HOH . E 5 HOH A 18 318 36 HOH HOH . E 5 HOH A 19 319 66 HOH HOH . E 5 HOH A 20 320 22 HOH HOH . E 5 HOH A 21 321 12 HOH HOH . E 5 HOH A 22 322 4 HOH HOH . E 5 HOH A 23 323 90 HOH HOH . E 5 HOH A 24 324 13 HOH HOH . E 5 HOH A 25 325 80 HOH HOH . E 5 HOH A 26 326 61 HOH HOH . E 5 HOH A 27 327 100 HOH HOH . E 5 HOH A 28 328 24 HOH HOH . E 5 HOH A 29 329 154 HOH HOH . E 5 HOH A 30 330 57 HOH HOH . E 5 HOH A 31 331 151 HOH HOH . E 5 HOH A 32 332 42 HOH HOH . E 5 HOH A 33 333 89 HOH HOH . E 5 HOH A 34 334 33 HOH HOH . E 5 HOH A 35 335 65 HOH HOH . E 5 HOH A 36 336 72 HOH HOH . E 5 HOH A 37 337 116 HOH HOH . E 5 HOH A 38 338 27 HOH HOH . E 5 HOH A 39 339 19 HOH HOH . E 5 HOH A 40 340 128 HOH HOH . E 5 HOH A 41 341 43 HOH HOH . E 5 HOH A 42 342 51 HOH HOH . E 5 HOH A 43 343 21 HOH HOH . E 5 HOH A 44 344 29 HOH HOH . E 5 HOH A 45 345 102 HOH HOH . E 5 HOH A 46 346 119 HOH HOH . E 5 HOH A 47 347 1 HOH HOH . E 5 HOH A 48 348 6 HOH HOH . E 5 HOH A 49 349 8 HOH HOH . E 5 HOH A 50 350 44 HOH HOH . E 5 HOH A 51 351 11 HOH HOH . E 5 HOH A 52 352 7 HOH HOH . E 5 HOH A 53 353 32 HOH HOH . E 5 HOH A 54 354 48 HOH HOH . E 5 HOH A 55 355 46 HOH HOH . E 5 HOH A 56 356 39 HOH HOH . E 5 HOH A 57 357 107 HOH HOH . E 5 HOH A 58 358 18 HOH HOH . E 5 HOH A 59 359 64 HOH HOH . E 5 HOH A 60 360 91 HOH HOH . E 5 HOH A 61 361 131 HOH HOH . E 5 HOH A 62 362 68 HOH HOH . E 5 HOH A 63 363 109 HOH HOH . E 5 HOH A 64 364 3 HOH HOH . E 5 HOH A 65 365 77 HOH HOH . E 5 HOH A 66 366 120 HOH HOH . E 5 HOH A 67 367 26 HOH HOH . E 5 HOH A 68 368 97 HOH HOH . E 5 HOH A 69 369 73 HOH HOH . E 5 HOH A 70 370 49 HOH HOH . E 5 HOH A 71 371 41 HOH HOH . E 5 HOH A 72 372 74 HOH HOH . E 5 HOH A 73 373 71 HOH HOH . E 5 HOH A 74 374 30 HOH HOH . E 5 HOH A 75 375 2 HOH HOH . E 5 HOH A 76 376 28 HOH HOH . E 5 HOH A 77 377 63 HOH HOH . E 5 HOH A 78 378 5 HOH HOH . E 5 HOH A 79 379 94 HOH HOH . E 5 HOH A 80 380 67 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 96 HOH HOH . E 5 HOH A 83 383 14 HOH HOH . E 5 HOH A 84 384 83 HOH HOH . E 5 HOH A 85 385 56 HOH HOH . E 5 HOH A 86 386 25 HOH HOH . E 5 HOH A 87 387 99 HOH HOH . E 5 HOH A 88 388 53 HOH HOH . E 5 HOH A 89 389 140 HOH HOH . E 5 HOH A 90 390 37 HOH HOH . E 5 HOH A 91 391 62 HOH HOH . E 5 HOH A 92 392 20 HOH HOH . E 5 HOH A 93 393 69 HOH HOH . E 5 HOH A 94 394 111 HOH HOH . E 5 HOH A 95 395 54 HOH HOH . E 5 HOH A 96 396 101 HOH HOH . E 5 HOH A 97 397 137 HOH HOH . E 5 HOH A 98 398 31 HOH HOH . E 5 HOH A 99 399 16 HOH HOH . E 5 HOH A 100 400 52 HOH HOH . E 5 HOH A 101 401 133 HOH HOH . E 5 HOH A 102 402 10 HOH HOH . E 5 HOH A 103 403 129 HOH HOH . E 5 HOH A 104 404 55 HOH HOH . E 5 HOH A 105 405 23 HOH HOH . E 5 HOH A 106 406 79 HOH HOH . E 5 HOH A 107 407 40 HOH HOH . E 5 HOH A 108 408 127 HOH HOH . E 5 HOH A 109 409 142 HOH HOH . E 5 HOH A 110 410 135 HOH HOH . E 5 HOH A 111 411 110 HOH HOH . E 5 HOH A 112 412 86 HOH HOH . E 5 HOH A 113 413 104 HOH HOH . E 5 HOH A 114 414 123 HOH HOH . E 5 HOH A 115 415 138 HOH HOH . E 5 HOH A 116 416 149 HOH HOH . E 5 HOH A 117 417 76 HOH HOH . E 5 HOH A 118 418 70 HOH HOH . E 5 HOH A 119 419 156 HOH HOH . E 5 HOH A 120 420 141 HOH HOH . E 5 HOH A 121 421 126 HOH HOH . E 5 HOH A 122 422 139 HOH HOH . E 5 HOH A 123 423 15 HOH HOH . E 5 HOH A 124 424 105 HOH HOH . E 5 HOH A 125 425 117 HOH HOH . E 5 HOH A 126 426 144 HOH HOH . E 5 HOH A 127 427 87 HOH HOH . E 5 HOH A 128 428 145 HOH HOH . E 5 HOH A 129 429 148 HOH HOH . E 5 HOH A 130 430 95 HOH HOH . E 5 HOH A 131 431 124 HOH HOH . E 5 HOH A 132 432 88 HOH HOH . E 5 HOH A 133 433 35 HOH HOH . E 5 HOH A 134 434 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 VCA . B . C 3 -3.131 22.869 0.133 0.42 35.61 ? O2 VCA 202 A 1 HETATM 2 C C1 VCA . B . C 3 -2.466 23.871 0.5 0.42 37.67 ? C1 VCA 202 A 1 HETATM 3 O O1 VCA . B . C 3 -2.84 24.531 1.506 0.42 40.18 ? O1 VCA 202 A 1 HETATM 4 C C2 VCA . B . C 3 -1.236 24.286 -0.279 0.42 46.47 ? C2 VCA 202 A 1 HETATM 5 C C3 VCA . B . C 3 -1.648 24.623 -1.695 0.42 40.32 ? C3 VCA 202 A 1 HETATM 6 C C4 VCA . B . C 3 -0.495 25.247 -2.444 0.42 49.94 ? C4 VCA 202 A 1 HETATM 7 C C5 VCA . B . C 3 -0.906 25.362 -3.892 0.42 31.45 ? C5 VCA 202 A 1 HETATM 8 C C6 VCA . B . C 3 0.086 26.204 -4.674 0.42 44.94 ? C6 VCA 202 A 1 HETATM 9 C C7 VCA . B . C 3 -0.632 27.319 -5.408 0.42 47 ? C7 VCA 202 A 1 HETATM 10 C C8 VCA . B . C 3 0.211 27.803 -6.568 0.42 33.35 ? C8 VCA 202 A 1 HETATM 11 C C9 VCA . B . C 3 -0.193 29.208 -6.969 0.42 33.86 ? C9 VCA 202 A 1 HETATM 12 C C10 VCA . B . C 3 -1.558 29.205 -7.623 0.42 38.52 ? C10 VCA 202 A 1 HETATM 13 C C11 VCA . B . C 3 -2.404 30.274 -6.962 0.42 46.7 ? C11 VCA 202 A 1 HETATM 14 C C12 VCA . B . C 3 -3.721 30.109 -6.713 0.42 46.02 ? C12 VCA 202 A 1 HETATM 15 C C13 VCA . B . C 3 -4.455 28.839 -7.075 0.42 53.76 ? C13 VCA 202 A 1 HETATM 16 C C14 VCA . B . C 3 -5.811 28.811 -6.395 0.42 49.91 ? C14 VCA 202 A 1 HETATM 17 C C15 VCA . B . C 3 -5.716 28.933 -4.885 0.42 49.24 ? C15 VCA 202 A 1 HETATM 18 C C16 VCA . B . C 3 -4.751 27.937 -4.27 0.42 44.51 ? C16 VCA 202 A 1 HETATM 19 C C17 VCA . B . C 3 -4.984 26.521 -4.763 0.42 50.66 ? C17 VCA 202 A 1 HETATM 20 C C18 VCA . B . C 3 -6.433 26.11 -4.605 0.42 48.92 ? C18 VCA 202 A 1 HETATM 21 H H21 VCA . B . C 3 -0.592 23.55 -0.291 0.42 55.76 ? H21 VCA 202 A 1 HETATM 22 H H22 VCA . B . C 3 -0.83 25.07 0.141 0.42 55.76 ? H22 VCA 202 A 1 HETATM 23 H H31 VCA . B . C 3 -2.397 25.252 -1.672 0.42 48.39 ? H31 VCA 202 A 1 HETATM 24 H H32 VCA . B . C 3 -1.926 23.805 -2.153 0.42 48.39 ? H32 VCA 202 A 1 HETATM 25 H H41 VCA . B . C 3 0.298 24.68 -2.367 0.42 59.93 ? H41 VCA 202 A 1 HETATM 26 H H42 VCA . B . C 3 -0.305 26.135 -2.081 0.42 59.93 ? H42 VCA 202 A 1 HETATM 27 H H51 VCA . B . C 3 -1.79 25.777 -3.943 0.42 37.74 ? H51 VCA 202 A 1 HETATM 28 H H52 VCA . B . C 3 -0.948 24.467 -4.286 0.42 37.74 ? H52 VCA 202 A 1 HETATM 29 H H61 VCA . B . C 3 0.551 25.637 -5.322 0.42 53.92 ? H61 VCA 202 A 1 HETATM 30 H H62 VCA . B . C 3 0.739 26.591 -4.056 0.42 53.92 ? H62 VCA 202 A 1 HETATM 31 H H71 VCA . B . C 3 -0.793 28.062 -4.791 0.42 56.4 ? H71 VCA 202 A 1 HETATM 32 H H72 VCA . B . C 3 -1.488 26.987 -5.745 0.42 56.4 ? H72 VCA 202 A 1 HETATM 33 H H81 VCA . B . C 3 0.088 27.203 -7.33 0.42 40.02 ? H81 VCA 202 A 1 HETATM 34 H H82 VCA . B . C 3 1.153 27.801 -6.305 0.42 40.02 ? H82 VCA 202 A 1 HETATM 35 H H91 VCA . B . C 3 0.465 29.565 -7.598 0.42 40.64 ? H91 VCA 202 A 1 HETATM 36 H H92 VCA . B . C 3 -0.218 29.775 -6.173 0.42 40.64 ? H92 VCA 202 A 1 HETATM 37 H H101 VCA . B . C 3 -1.979 28.33 -7.504 0.42 46.23 ? H101 VCA 202 A 1 HETATM 38 H H102 VCA . B . C 3 -1.467 29.399 -8.578 0.42 46.23 ? H102 VCA 202 A 1 HETATM 39 H H11 VCA . B . C 3 -1.981 31.116 -6.707 0.42 56.04 ? H11 VCA 202 A 1 HETATM 40 H H12 VCA . B . C 3 -4.215 30.833 -6.284 0.42 55.22 ? H12 VCA 202 A 1 HETATM 41 H H131 VCA . B . C 3 -3.93 28.067 -6.783 0.42 64.51 ? H131 VCA 202 A 1 HETATM 42 H H132 VCA . B . C 3 -4.577 28.8 -8.045 0.42 64.51 ? H132 VCA 202 A 1 HETATM 43 H H141 VCA . B . C 3 -6.257 27.969 -6.616 0.42 59.89 ? H141 VCA 202 A 1 HETATM 44 H H142 VCA . B . C 3 -6.35 29.553 -6.737 0.42 59.89 ? H142 VCA 202 A 1 HETATM 45 H H151 VCA . B . C 3 -6.603 28.788 -4.501 0.42 59.09 ? H151 VCA 202 A 1 HETATM 46 H H152 VCA . B . C 3 -5.419 29.837 -4.661 0.42 59.09 ? H152 VCA 202 A 1 HETATM 47 H H161 VCA . B . C 3 -4.856 27.954 -3.298 0.42 53.41 ? H161 VCA 202 A 1 HETATM 48 H H162 VCA . B . C 3 -3.837 28.202 -4.494 0.42 53.41 ? H162 VCA 202 A 1 HETATM 49 H H171 VCA . B . C 3 -4.42 25.908 -4.251 0.42 60.79 ? H171 VCA 202 A 1 HETATM 50 H H172 VCA . B . C 3 -4.738 26.468 -5.708 0.42 60.79 ? H172 VCA 202 A 1 HETATM 51 H H181 VCA . B . C 3 -6.995 26.659 -5.191 0.42 58.7 ? H181 VCA 202 A 1 HETATM 52 H H182 VCA . B . C 3 -6.533 25.166 -4.848 0.42 58.7 ? H182 VCA 202 A 1 HETATM 53 H H183 VCA . B . C 3 -6.71 26.239 -3.674 0.42 58.7 ? H183 VCA 202 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #