data_5N4P
#
_model_server_result.job_id            mLyr3BQnJDk8mnqSsTH30g 
_model_server_result.datetime_utc      '2024-11-23 04:21:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5N4P 
#
_exptl.entry_id    5N4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N4P 
_cell.length_a            64.844 
_cell.length_b            64.844 
_cell.length_c            101.148 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 216 n n 
C1 O2 MLT sing 217 n n 
C1 C2 MLT sing 218 n n 
C2 O3 MLT sing 219 n n 
C2 C3 MLT sing 220 n n 
C2 H2 MLT sing 221 n n 
O3 HO3 MLT sing 222 n n 
C3 C4 MLT sing 223 n n 
C3 H31 MLT sing 224 n n 
C3 H32 MLT sing 225 n n 
C4 O4 MLT doub 226 n n 
C4 O5 MLT sing 227 n n 
O5 HO5 MLT sing 228 n n 
O2 H6 MLT sing 229 n n 
#
_atom_sites.entry_id                     5N4P 
_atom_sites.fract_transf_matrix[1][1]    0.015422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015422 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009887 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLM A 1 201 1 PLM PLM . 
C 3 MLT A 1 202 1 MLT MLT . 
D 4 VCA A 1 203 1 VCA VCA . 
E 5 HOH A 1 301 209 HOH HOH . 
E 5 HOH A 2 302 69 HOH HOH . 
E 5 HOH A 3 303 183 HOH HOH . 
E 5 HOH A 4 304 194 HOH HOH . 
E 5 HOH A 5 305 20 HOH HOH . 
E 5 HOH A 6 306 31 HOH HOH . 
E 5 HOH A 7 307 59 HOH HOH . 
E 5 HOH A 8 308 6 HOH HOH . 
E 5 HOH A 9 309 80 HOH HOH . 
E 5 HOH A 10 310 45 HOH HOH . 
E 5 HOH A 11 311 115 HOH HOH . 
E 5 HOH A 12 312 36 HOH HOH . 
E 5 HOH A 13 313 114 HOH HOH . 
E 5 HOH A 14 314 79 HOH HOH . 
E 5 HOH A 15 315 71 HOH HOH . 
E 5 HOH A 16 316 13 HOH HOH . 
E 5 HOH A 17 317 168 HOH HOH . 
E 5 HOH A 18 318 105 HOH HOH . 
E 5 HOH A 19 319 186 HOH HOH . 
E 5 HOH A 20 320 33 HOH HOH . 
E 5 HOH A 21 321 101 HOH HOH . 
E 5 HOH A 22 322 5 HOH HOH . 
E 5 HOH A 23 323 132 HOH HOH . 
E 5 HOH A 24 324 43 HOH HOH . 
E 5 HOH A 25 325 70 HOH HOH . 
E 5 HOH A 26 326 61 HOH HOH . 
E 5 HOH A 27 327 18 HOH HOH . 
E 5 HOH A 28 328 156 HOH HOH . 
E 5 HOH A 29 329 57 HOH HOH . 
E 5 HOH A 30 330 203 HOH HOH . 
E 5 HOH A 31 331 63 HOH HOH . 
E 5 HOH A 32 332 76 HOH HOH . 
E 5 HOH A 33 333 124 HOH HOH . 
E 5 HOH A 34 334 4 HOH HOH . 
E 5 HOH A 35 335 113 HOH HOH . 
E 5 HOH A 36 336 24 HOH HOH . 
E 5 HOH A 37 337 65 HOH HOH . 
E 5 HOH A 38 338 55 HOH HOH . 
E 5 HOH A 39 339 41 HOH HOH . 
E 5 HOH A 40 340 52 HOH HOH . 
E 5 HOH A 41 341 200 HOH HOH . 
E 5 HOH A 42 342 27 HOH HOH . 
E 5 HOH A 43 343 201 HOH HOH . 
E 5 HOH A 44 344 19 HOH HOH . 
E 5 HOH A 45 345 38 HOH HOH . 
E 5 HOH A 46 346 35 HOH HOH . 
E 5 HOH A 47 347 123 HOH HOH . 
E 5 HOH A 48 348 21 HOH HOH . 
E 5 HOH A 49 349 8 HOH HOH . 
E 5 HOH A 50 350 93 HOH HOH . 
E 5 HOH A 51 351 49 HOH HOH . 
E 5 HOH A 52 352 17 HOH HOH . 
E 5 HOH A 53 353 10 HOH HOH . 
E 5 HOH A 54 354 3 HOH HOH . 
E 5 HOH A 55 355 12 HOH HOH . 
E 5 HOH A 56 356 207 HOH HOH . 
E 5 HOH A 57 357 26 HOH HOH . 
E 5 HOH A 58 358 14 HOH HOH . 
E 5 HOH A 59 359 91 HOH HOH . 
E 5 HOH A 60 360 104 HOH HOH . 
E 5 HOH A 61 361 83 HOH HOH . 
E 5 HOH A 62 362 155 HOH HOH . 
E 5 HOH A 63 363 127 HOH HOH . 
E 5 HOH A 64 364 9 HOH HOH . 
E 5 HOH A 65 365 100 HOH HOH . 
E 5 HOH A 66 366 25 HOH HOH . 
E 5 HOH A 67 367 87 HOH HOH . 
E 5 HOH A 68 368 106 HOH HOH . 
E 5 HOH A 69 369 64 HOH HOH . 
E 5 HOH A 70 370 103 HOH HOH . 
E 5 HOH A 71 371 72 HOH HOH . 
E 5 HOH A 72 372 84 HOH HOH . 
E 5 HOH A 73 373 109 HOH HOH . 
E 5 HOH A 74 374 135 HOH HOH . 
E 5 HOH A 75 375 46 HOH HOH . 
E 5 HOH A 76 376 73 HOH HOH . 
E 5 HOH A 77 377 23 HOH HOH . 
E 5 HOH A 78 378 53 HOH HOH . 
E 5 HOH A 79 379 11 HOH HOH . 
E 5 HOH A 80 380 7 HOH HOH . 
E 5 HOH A 81 381 206 HOH HOH . 
E 5 HOH A 82 382 129 HOH HOH . 
E 5 HOH A 83 383 165 HOH HOH . 
E 5 HOH A 84 384 15 HOH HOH . 
E 5 HOH A 85 385 48 HOH HOH . 
E 5 HOH A 86 386 42 HOH HOH . 
E 5 HOH A 87 387 116 HOH HOH . 
E 5 HOH A 88 388 54 HOH HOH . 
E 5 HOH A 89 389 30 HOH HOH . 
E 5 HOH A 90 390 1 HOH HOH . 
E 5 HOH A 91 391 94 HOH HOH . 
E 5 HOH A 92 392 75 HOH HOH . 
E 5 HOH A 93 393 29 HOH HOH . 
E 5 HOH A 94 394 67 HOH HOH . 
E 5 HOH A 95 395 40 HOH HOH . 
E 5 HOH A 96 396 208 HOH HOH . 
E 5 HOH A 97 397 56 HOH HOH . 
E 5 HOH A 98 398 199 HOH HOH . 
E 5 HOH A 99 399 191 HOH HOH . 
E 5 HOH A 100 400 28 HOH HOH . 
E 5 HOH A 101 401 34 HOH HOH . 
E 5 HOH A 102 402 51 HOH HOH . 
E 5 HOH A 103 403 85 HOH HOH . 
E 5 HOH A 104 404 102 HOH HOH . 
E 5 HOH A 105 405 39 HOH HOH . 
E 5 HOH A 106 406 119 HOH HOH . 
E 5 HOH A 107 407 22 HOH HOH . 
E 5 HOH A 108 408 16 HOH HOH . 
E 5 HOH A 109 409 99 HOH HOH . 
E 5 HOH A 110 410 44 HOH HOH . 
E 5 HOH A 111 411 96 HOH HOH . 
E 5 HOH A 112 412 68 HOH HOH . 
E 5 HOH A 113 413 151 HOH HOH . 
E 5 HOH A 114 414 82 HOH HOH . 
E 5 HOH A 115 415 205 HOH HOH . 
E 5 HOH A 116 416 89 HOH HOH . 
E 5 HOH A 117 417 66 HOH HOH . 
E 5 HOH A 118 418 78 HOH HOH . 
E 5 HOH A 119 419 187 HOH HOH . 
E 5 HOH A 120 420 50 HOH HOH . 
E 5 HOH A 121 421 166 HOH HOH . 
E 5 HOH A 122 422 32 HOH HOH . 
E 5 HOH A 123 423 110 HOH HOH . 
E 5 HOH A 124 424 178 HOH HOH . 
E 5 HOH A 125 425 154 HOH HOH . 
E 5 HOH A 126 426 143 HOH HOH . 
E 5 HOH A 127 427 60 HOH HOH . 
E 5 HOH A 128 428 95 HOH HOH . 
E 5 HOH A 129 429 88 HOH HOH . 
E 5 HOH A 130 430 37 HOH HOH . 
E 5 HOH A 131 431 90 HOH HOH . 
E 5 HOH A 132 432 153 HOH HOH . 
E 5 HOH A 133 433 177 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . A . C 3 -13.178 30.435 -3.029 0.85 39.99 ? C1 MLT 202 A 1 
HETATM 2 O O1 MLT . A . C 3 -13.828 29.994 -3.987 0.85 44.35 ? O1 MLT 202 A 1 
HETATM 3 O O2 MLT . A . C 3 -11.966 30.656 -3.185 0.85 34.8 ? O2 MLT 202 A 1 
HETATM 4 C C2 MLT . A . C 3 -13.867 30.685 -1.711 0.85 49.8 ? C2 MLT 202 A 1 
HETATM 5 O O3 MLT . A . C 3 -15.151 30.104 -1.768 0.85 53.54 ? O3 MLT 202 A 1 
HETATM 6 C C3 MLT . A . C 3 -13.993 32.178 -1.421 0.85 45.32 ? C3 MLT 202 A 1 
HETATM 7 C C4 MLT . A . C 3 -14.435 32.437 0.01 0.85 69.55 ? C4 MLT 202 A 1 
HETATM 8 O O4 MLT . A . C 3 -14.561 33.611 0.428 0.85 59.02 ? O4 MLT 202 A 1 
HETATM 9 O O5 MLT . A . C 3 -14.681 31.499 0.806 0.85 61.98 ? O5 MLT 202 A 1 
HETATM 10 H H2 MLT . A . C 3 -13.288 30.223 -0.912 0.85 59.75 ? H2 MLT 202 A 1 
HETATM 11 H HO3 MLT . A . C 3 -15.829 30.793 -1.608 0.85 64.25 ? HO3 MLT 202 A 1 
HETATM 12 H H31 MLT . A . C 3 -14.716 32.619 -2.107 0.85 54.38 ? H31 MLT 202 A 1 
HETATM 13 H H32 MLT . A . C 3 -13.032 32.662 -1.595 0.85 54.38 ? H32 MLT 202 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#