data_5N4P # _model_server_result.job_id Ks70cZ-pOjqVE9bR6ZV-Ew _model_server_result.datetime_utc '2024-11-23 04:13:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5N4P # _exptl.entry_id 5N4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'VACCENIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N4P _cell.length_a 64.844 _cell.length_b 64.844 _cell.length_c 101.148 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id VCA _chem_comp.mon_nstd_flag . _chem_comp.name 'VACCENIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(11E)-OCTADEC-11-ENOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 VCA sing 418 n n O2 HO2 VCA sing 419 n n C1 O1 VCA doub 420 n n C1 C2 VCA sing 421 n n C2 C3 VCA sing 422 n n C2 H21 VCA sing 423 n n C2 H22 VCA sing 424 n n C3 C4 VCA sing 425 n n C3 H31 VCA sing 426 n n C3 H32 VCA sing 427 n n C4 C5 VCA sing 428 n n C4 H41 VCA sing 429 n n C4 H42 VCA sing 430 n n C5 C6 VCA sing 431 n n C5 H51 VCA sing 432 n n C5 H52 VCA sing 433 n n C6 C7 VCA sing 434 n n C6 H61 VCA sing 435 n n C6 H62 VCA sing 436 n n C7 C8 VCA sing 437 n n C7 H71 VCA sing 438 n n C7 H72 VCA sing 439 n n C8 C9 VCA sing 440 n n C8 H81 VCA sing 441 n n C8 H82 VCA sing 442 n n C9 C10 VCA sing 443 n n C9 H91 VCA sing 444 n n C9 H92 VCA sing 445 n n C10 C11 VCA sing 446 n n C10 H101 VCA sing 447 n n C10 H102 VCA sing 448 n n C11 C12 VCA doub 449 z n C11 H11 VCA sing 450 n n C12 C13 VCA sing 451 n n C12 H12 VCA sing 452 n n C13 C14 VCA sing 453 n n C13 H131 VCA sing 454 n n C13 H132 VCA sing 455 n n C14 C15 VCA sing 456 n n C14 H141 VCA sing 457 n n C14 H142 VCA sing 458 n n C15 C16 VCA sing 459 n n C15 H151 VCA sing 460 n n C15 H152 VCA sing 461 n n C16 C17 VCA sing 462 n n C16 H161 VCA sing 463 n n C16 H162 VCA sing 464 n n C17 C18 VCA sing 465 n n C17 H171 VCA sing 466 n n C17 H172 VCA sing 467 n n C18 H181 VCA sing 468 n n C18 H182 VCA sing 469 n n C18 H183 VCA sing 470 n n # _atom_sites.entry_id 5N4P _atom_sites.fract_transf_matrix[1][1] 0.015422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 1 PLM PLM . C 3 MLT A 1 202 1 MLT MLT . D 4 VCA A 1 203 1 VCA VCA . E 5 HOH A 1 301 209 HOH HOH . E 5 HOH A 2 302 69 HOH HOH . E 5 HOH A 3 303 183 HOH HOH . E 5 HOH A 4 304 194 HOH HOH . E 5 HOH A 5 305 20 HOH HOH . E 5 HOH A 6 306 31 HOH HOH . E 5 HOH A 7 307 59 HOH HOH . E 5 HOH A 8 308 6 HOH HOH . E 5 HOH A 9 309 80 HOH HOH . E 5 HOH A 10 310 45 HOH HOH . E 5 HOH A 11 311 115 HOH HOH . E 5 HOH A 12 312 36 HOH HOH . E 5 HOH A 13 313 114 HOH HOH . E 5 HOH A 14 314 79 HOH HOH . E 5 HOH A 15 315 71 HOH HOH . E 5 HOH A 16 316 13 HOH HOH . E 5 HOH A 17 317 168 HOH HOH . E 5 HOH A 18 318 105 HOH HOH . E 5 HOH A 19 319 186 HOH HOH . E 5 HOH A 20 320 33 HOH HOH . E 5 HOH A 21 321 101 HOH HOH . E 5 HOH A 22 322 5 HOH HOH . E 5 HOH A 23 323 132 HOH HOH . E 5 HOH A 24 324 43 HOH HOH . E 5 HOH A 25 325 70 HOH HOH . E 5 HOH A 26 326 61 HOH HOH . E 5 HOH A 27 327 18 HOH HOH . E 5 HOH A 28 328 156 HOH HOH . E 5 HOH A 29 329 57 HOH HOH . E 5 HOH A 30 330 203 HOH HOH . E 5 HOH A 31 331 63 HOH HOH . E 5 HOH A 32 332 76 HOH HOH . E 5 HOH A 33 333 124 HOH HOH . E 5 HOH A 34 334 4 HOH HOH . E 5 HOH A 35 335 113 HOH HOH . E 5 HOH A 36 336 24 HOH HOH . E 5 HOH A 37 337 65 HOH HOH . E 5 HOH A 38 338 55 HOH HOH . E 5 HOH A 39 339 41 HOH HOH . E 5 HOH A 40 340 52 HOH HOH . E 5 HOH A 41 341 200 HOH HOH . E 5 HOH A 42 342 27 HOH HOH . E 5 HOH A 43 343 201 HOH HOH . E 5 HOH A 44 344 19 HOH HOH . E 5 HOH A 45 345 38 HOH HOH . E 5 HOH A 46 346 35 HOH HOH . E 5 HOH A 47 347 123 HOH HOH . E 5 HOH A 48 348 21 HOH HOH . E 5 HOH A 49 349 8 HOH HOH . E 5 HOH A 50 350 93 HOH HOH . E 5 HOH A 51 351 49 HOH HOH . E 5 HOH A 52 352 17 HOH HOH . E 5 HOH A 53 353 10 HOH HOH . E 5 HOH A 54 354 3 HOH HOH . E 5 HOH A 55 355 12 HOH HOH . E 5 HOH A 56 356 207 HOH HOH . E 5 HOH A 57 357 26 HOH HOH . E 5 HOH A 58 358 14 HOH HOH . E 5 HOH A 59 359 91 HOH HOH . E 5 HOH A 60 360 104 HOH HOH . E 5 HOH A 61 361 83 HOH HOH . E 5 HOH A 62 362 155 HOH HOH . E 5 HOH A 63 363 127 HOH HOH . E 5 HOH A 64 364 9 HOH HOH . E 5 HOH A 65 365 100 HOH HOH . E 5 HOH A 66 366 25 HOH HOH . E 5 HOH A 67 367 87 HOH HOH . E 5 HOH A 68 368 106 HOH HOH . E 5 HOH A 69 369 64 HOH HOH . E 5 HOH A 70 370 103 HOH HOH . E 5 HOH A 71 371 72 HOH HOH . E 5 HOH A 72 372 84 HOH HOH . E 5 HOH A 73 373 109 HOH HOH . E 5 HOH A 74 374 135 HOH HOH . E 5 HOH A 75 375 46 HOH HOH . E 5 HOH A 76 376 73 HOH HOH . E 5 HOH A 77 377 23 HOH HOH . E 5 HOH A 78 378 53 HOH HOH . E 5 HOH A 79 379 11 HOH HOH . E 5 HOH A 80 380 7 HOH HOH . E 5 HOH A 81 381 206 HOH HOH . E 5 HOH A 82 382 129 HOH HOH . E 5 HOH A 83 383 165 HOH HOH . E 5 HOH A 84 384 15 HOH HOH . E 5 HOH A 85 385 48 HOH HOH . E 5 HOH A 86 386 42 HOH HOH . E 5 HOH A 87 387 116 HOH HOH . E 5 HOH A 88 388 54 HOH HOH . E 5 HOH A 89 389 30 HOH HOH . E 5 HOH A 90 390 1 HOH HOH . E 5 HOH A 91 391 94 HOH HOH . E 5 HOH A 92 392 75 HOH HOH . E 5 HOH A 93 393 29 HOH HOH . E 5 HOH A 94 394 67 HOH HOH . E 5 HOH A 95 395 40 HOH HOH . E 5 HOH A 96 396 208 HOH HOH . E 5 HOH A 97 397 56 HOH HOH . E 5 HOH A 98 398 199 HOH HOH . E 5 HOH A 99 399 191 HOH HOH . E 5 HOH A 100 400 28 HOH HOH . E 5 HOH A 101 401 34 HOH HOH . E 5 HOH A 102 402 51 HOH HOH . E 5 HOH A 103 403 85 HOH HOH . E 5 HOH A 104 404 102 HOH HOH . E 5 HOH A 105 405 39 HOH HOH . E 5 HOH A 106 406 119 HOH HOH . E 5 HOH A 107 407 22 HOH HOH . E 5 HOH A 108 408 16 HOH HOH . E 5 HOH A 109 409 99 HOH HOH . E 5 HOH A 110 410 44 HOH HOH . E 5 HOH A 111 411 96 HOH HOH . E 5 HOH A 112 412 68 HOH HOH . E 5 HOH A 113 413 151 HOH HOH . E 5 HOH A 114 414 82 HOH HOH . E 5 HOH A 115 415 205 HOH HOH . E 5 HOH A 116 416 89 HOH HOH . E 5 HOH A 117 417 66 HOH HOH . E 5 HOH A 118 418 78 HOH HOH . E 5 HOH A 119 419 187 HOH HOH . E 5 HOH A 120 420 50 HOH HOH . E 5 HOH A 121 421 166 HOH HOH . E 5 HOH A 122 422 32 HOH HOH . E 5 HOH A 123 423 110 HOH HOH . E 5 HOH A 124 424 178 HOH HOH . E 5 HOH A 125 425 154 HOH HOH . E 5 HOH A 126 426 143 HOH HOH . E 5 HOH A 127 427 60 HOH HOH . E 5 HOH A 128 428 95 HOH HOH . E 5 HOH A 129 429 88 HOH HOH . E 5 HOH A 130 430 37 HOH HOH . E 5 HOH A 131 431 90 HOH HOH . E 5 HOH A 132 432 153 HOH HOH . E 5 HOH A 133 433 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 VCA . B . D 4 -3.156 22.762 0.114 0.43 36.59 ? O2 VCA 203 A 1 HETATM 2 C C1 VCA . B . D 4 -2.494 23.81 0.323 0.43 38.88 ? C1 VCA 203 A 1 HETATM 3 O O1 VCA . B . D 4 -2.881 24.621 1.208 0.43 36.96 ? O1 VCA 203 A 1 HETATM 4 C C2 VCA . B . D 4 -1.248 24.094 -0.49 0.43 44.04 ? C2 VCA 203 A 1 HETATM 5 C C3 VCA . B . D 4 -1.642 24.796 -1.771 0.43 40.2 ? C3 VCA 203 A 1 HETATM 6 C C4 VCA . B . D 4 -0.407 25.118 -2.58 0.43 47.28 ? C4 VCA 203 A 1 HETATM 7 C C5 VCA . B . D 4 -0.819 25.748 -3.89 0.43 38.84 ? C5 VCA 203 A 1 HETATM 8 C C6 VCA . B . D 4 0.417 26.218 -4.631 0.43 43.09 ? C6 VCA 203 A 1 HETATM 9 C C7 VCA . B . D 4 0.057 26.763 -5.995 0.43 41.42 ? C7 VCA 203 A 1 HETATM 10 C C8 VCA . B . D 4 -0.484 28.175 -5.899 0.43 41.12 ? C8 VCA 203 A 1 HETATM 11 C C9 VCA . B . D 4 -0.42 28.856 -7.251 0.43 40.75 ? C9 VCA 203 A 1 HETATM 12 C C10 VCA . B . D 4 -1.782 28.862 -7.912 0.43 34.44 ? C10 VCA 203 A 1 HETATM 13 C C11 VCA . B . D 4 -2.528 30.117 -7.505 0.43 37.9 ? C11 VCA 203 A 1 HETATM 14 C C12 VCA . B . D 4 -3.769 30.136 -6.961 0.43 42.22 ? C12 VCA 203 A 1 HETATM 15 C C13 VCA . B . D 4 -4.597 28.899 -6.692 0.43 45.51 ? C13 VCA 203 A 1 HETATM 16 C C14 VCA . B . D 4 -5.274 29.034 -5.346 0.43 41.68 ? C14 VCA 203 A 1 HETATM 17 C C15 VCA . B . D 4 -6.355 27.98 -5.196 0.43 40.28 ? C15 VCA 203 A 1 HETATM 18 C C16 VCA . B . D 4 -5.831 26.586 -5.477 0.43 42.64 ? C16 VCA 203 A 1 HETATM 19 C C17 VCA . B . D 4 -4.528 26.292 -4.762 0.43 44.91 ? C17 VCA 203 A 1 HETATM 20 C C18 VCA . B . D 4 -4.719 26.526 -3.291 0.43 44.89 ? C18 VCA 203 A 1 HETATM 21 H H21 VCA . B . D 4 -0.644 24.666 0.025 0.43 52.84 ? H21 VCA 203 A 1 HETATM 22 H H22 VCA . B . D 4 -0.798 23.252 -0.703 0.43 52.84 ? H22 VCA 203 A 1 HETATM 23 H H31 VCA . B . D 4 -2.23 24.214 -2.293 0.43 48.24 ? H31 VCA 203 A 1 HETATM 24 H H32 VCA . B . D 4 -2.115 25.625 -1.555 0.43 48.24 ? H32 VCA 203 A 1 HETATM 25 H H41 VCA . B . D 4 0.157 25.743 -2.081 0.43 56.73 ? H41 VCA 203 A 1 HETATM 26 H H42 VCA . B . D 4 0.092 24.296 -2.756 0.43 56.73 ? H42 VCA 203 A 1 HETATM 27 H H51 VCA . B . D 4 -1.294 25.088 -4.433 0.43 46.61 ? H51 VCA 203 A 1 HETATM 28 H H52 VCA . B . D 4 -1.405 26.511 -3.715 0.43 46.61 ? H52 VCA 203 A 1 HETATM 29 H H61 VCA . B . D 4 1.032 25.466 -4.738 0.43 51.71 ? H61 VCA 203 A 1 HETATM 30 H H62 VCA . B . D 4 0.855 26.92 -4.11 0.43 51.71 ? H62 VCA 203 A 1 HETATM 31 H H71 VCA . B . D 4 -0.621 26.188 -6.401 0.43 49.71 ? H71 VCA 203 A 1 HETATM 32 H H72 VCA . B . D 4 0.856 26.764 -6.559 0.43 49.71 ? H72 VCA 203 A 1 HETATM 33 H H81 VCA . B . D 4 0.05 28.683 -5.256 0.43 49.34 ? H81 VCA 203 A 1 HETATM 34 H H82 VCA . B . D 4 -1.413 28.145 -5.595 0.43 49.34 ? H82 VCA 203 A 1 HETATM 35 H H91 VCA . B . D 4 0.213 28.377 -7.823 0.43 48.9 ? H91 VCA 203 A 1 HETATM 36 H H92 VCA . B . D 4 -0.115 29.777 -7.133 0.43 48.9 ? H92 VCA 203 A 1 HETATM 37 H H101 VCA . B . D 4 -2.288 28.075 -7.626 0.43 41.33 ? H101 VCA 203 A 1 HETATM 38 H H102 VCA . B . D 4 -1.675 28.846 -8.884 0.43 41.33 ? H102 VCA 203 A 1 HETATM 39 H H11 VCA . B . D 4 -2.079 30.973 -7.638 0.43 45.48 ? H11 VCA 203 A 1 HETATM 40 H H12 VCA . B . D 4 -4.156 31.003 -6.735 0.43 50.66 ? H12 VCA 203 A 1 HETATM 41 H H131 VCA . B . D 4 -4.017 28.112 -6.687 0.43 54.62 ? H131 VCA 203 A 1 HETATM 42 H H132 VCA . B . D 4 -5.275 28.801 -7.39 0.43 54.62 ? H132 VCA 203 A 1 HETATM 43 H H141 VCA . B . D 4 -5.676 29.923 -5.274 0.43 50.02 ? H141 VCA 203 A 1 HETATM 44 H H142 VCA . B . D 4 -4.611 28.92 -4.637 0.43 50.02 ? H142 VCA 203 A 1 HETATM 45 H H151 VCA . B . D 4 -6.704 28.011 -4.283 0.43 48.34 ? H151 VCA 203 A 1 HETATM 46 H H152 VCA . B . D 4 -7.081 28.179 -5.821 0.43 48.34 ? H152 VCA 203 A 1 HETATM 47 H H161 VCA . B . D 4 -6.501 25.934 -5.19 0.43 51.17 ? H161 VCA 203 A 1 HETATM 48 H H162 VCA . B . D 4 -5.69 26.49 -6.44 0.43 51.17 ? H162 VCA 203 A 1 HETATM 49 H H171 VCA . B . D 4 -3.827 26.885 -5.1 0.43 53.89 ? H171 VCA 203 A 1 HETATM 50 H H172 VCA . B . D 4 -4.272 25.361 -4.916 0.43 53.89 ? H172 VCA 203 A 1 HETATM 51 H H181 VCA . B . D 4 -3.861 26.426 -2.83 0.43 53.87 ? H181 VCA 203 A 1 HETATM 52 H H182 VCA . B . D 4 -5.359 25.874 -2.937 0.43 53.87 ? H182 VCA 203 A 1 HETATM 53 H H183 VCA . B . D 4 -5.064 27.432 -3.146 0.43 53.87 ? H183 VCA 203 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #