data_5N4Q # _model_server_result.job_id o_dfrllMEBfeknkRyyFw3Q _model_server_result.datetime_utc '2024-11-01 19:34:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5N4Q # _exptl.entry_id 5N4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'VACCENIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N4Q _cell.length_a 66.024 _cell.length_b 66.024 _cell.length_c 100.859 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id VCA _chem_comp.mon_nstd_flag . _chem_comp.name 'VACCENIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(11E)-OCTADEC-11-ENOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 VCA sing 418 n n O2 HO2 VCA sing 419 n n C1 O1 VCA doub 420 n n C1 C2 VCA sing 421 n n C2 C3 VCA sing 422 n n C2 H21 VCA sing 423 n n C2 H22 VCA sing 424 n n C3 C4 VCA sing 425 n n C3 H31 VCA sing 426 n n C3 H32 VCA sing 427 n n C4 C5 VCA sing 428 n n C4 H41 VCA sing 429 n n C4 H42 VCA sing 430 n n C5 C6 VCA sing 431 n n C5 H51 VCA sing 432 n n C5 H52 VCA sing 433 n n C6 C7 VCA sing 434 n n C6 H61 VCA sing 435 n n C6 H62 VCA sing 436 n n C7 C8 VCA sing 437 n n C7 H71 VCA sing 438 n n C7 H72 VCA sing 439 n n C8 C9 VCA sing 440 n n C8 H81 VCA sing 441 n n C8 H82 VCA sing 442 n n C9 C10 VCA sing 443 n n C9 H91 VCA sing 444 n n C9 H92 VCA sing 445 n n C10 C11 VCA sing 446 n n C10 H101 VCA sing 447 n n C10 H102 VCA sing 448 n n C11 C12 VCA doub 449 z n C11 H11 VCA sing 450 n n C12 C13 VCA sing 451 n n C12 H12 VCA sing 452 n n C13 C14 VCA sing 453 n n C13 H131 VCA sing 454 n n C13 H132 VCA sing 455 n n C14 C15 VCA sing 456 n n C14 H141 VCA sing 457 n n C14 H142 VCA sing 458 n n C15 C16 VCA sing 459 n n C15 H151 VCA sing 460 n n C15 H152 VCA sing 461 n n C16 C17 VCA sing 462 n n C16 H161 VCA sing 463 n n C16 H162 VCA sing 464 n n C17 C18 VCA sing 465 n n C17 H171 VCA sing 466 n n C17 H172 VCA sing 467 n n C18 H181 VCA sing 468 n n C18 H182 VCA sing 469 n n C18 H183 VCA sing 470 n n # _atom_sites.entry_id 5N4Q _atom_sites.fract_transf_matrix[1][1] 0.015146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 1 PLM PLM . C 3 VCA A 1 202 1 VCA VCA . D 4 MLT A 1 203 1 MLT MLT . E 5 HOH A 1 301 157 HOH HOH . E 5 HOH A 2 302 177 HOH HOH . E 5 HOH A 3 303 43 HOH HOH . E 5 HOH A 4 304 92 HOH HOH . E 5 HOH A 5 305 109 HOH HOH . E 5 HOH A 6 306 54 HOH HOH . E 5 HOH A 7 307 37 HOH HOH . E 5 HOH A 8 308 57 HOH HOH . E 5 HOH A 9 309 50 HOH HOH . E 5 HOH A 10 310 153 HOH HOH . E 5 HOH A 11 311 150 HOH HOH . E 5 HOH A 12 312 39 HOH HOH . E 5 HOH A 13 313 3 HOH HOH . E 5 HOH A 14 314 76 HOH HOH . E 5 HOH A 15 315 10 HOH HOH . E 5 HOH A 16 316 161 HOH HOH . E 5 HOH A 17 317 102 HOH HOH . E 5 HOH A 18 318 44 HOH HOH . E 5 HOH A 19 319 160 HOH HOH . E 5 HOH A 20 320 45 HOH HOH . E 5 HOH A 21 321 13 HOH HOH . E 5 HOH A 22 322 70 HOH HOH . E 5 HOH A 23 323 46 HOH HOH . E 5 HOH A 24 324 156 HOH HOH . E 5 HOH A 25 325 73 HOH HOH . E 5 HOH A 26 326 29 HOH HOH . E 5 HOH A 27 327 55 HOH HOH . E 5 HOH A 28 328 31 HOH HOH . E 5 HOH A 29 329 174 HOH HOH . E 5 HOH A 30 330 14 HOH HOH . E 5 HOH A 31 331 89 HOH HOH . E 5 HOH A 32 332 16 HOH HOH . E 5 HOH A 33 333 52 HOH HOH . E 5 HOH A 34 334 78 HOH HOH . E 5 HOH A 35 335 7 HOH HOH . E 5 HOH A 36 336 59 HOH HOH . E 5 HOH A 37 337 47 HOH HOH . E 5 HOH A 38 338 113 HOH HOH . E 5 HOH A 39 339 11 HOH HOH . E 5 HOH A 40 340 6 HOH HOH . E 5 HOH A 41 341 28 HOH HOH . E 5 HOH A 42 342 51 HOH HOH . E 5 HOH A 43 343 99 HOH HOH . E 5 HOH A 44 344 36 HOH HOH . E 5 HOH A 45 345 4 HOH HOH . E 5 HOH A 46 346 155 HOH HOH . E 5 HOH A 47 347 169 HOH HOH . E 5 HOH A 48 348 9 HOH HOH . E 5 HOH A 49 349 83 HOH HOH . E 5 HOH A 50 350 117 HOH HOH . E 5 HOH A 51 351 35 HOH HOH . E 5 HOH A 52 352 22 HOH HOH . E 5 HOH A 53 353 110 HOH HOH . E 5 HOH A 54 354 71 HOH HOH . E 5 HOH A 55 355 42 HOH HOH . E 5 HOH A 56 356 107 HOH HOH . E 5 HOH A 57 357 145 HOH HOH . E 5 HOH A 58 358 128 HOH HOH . E 5 HOH A 59 359 166 HOH HOH . E 5 HOH A 60 360 5 HOH HOH . E 5 HOH A 61 361 162 HOH HOH . E 5 HOH A 62 362 32 HOH HOH . E 5 HOH A 63 363 8 HOH HOH . E 5 HOH A 64 364 69 HOH HOH . E 5 HOH A 65 365 82 HOH HOH . E 5 HOH A 66 366 17 HOH HOH . E 5 HOH A 67 367 25 HOH HOH . E 5 HOH A 68 368 98 HOH HOH . E 5 HOH A 69 369 66 HOH HOH . E 5 HOH A 70 370 65 HOH HOH . E 5 HOH A 71 371 21 HOH HOH . E 5 HOH A 72 372 27 HOH HOH . E 5 HOH A 73 373 23 HOH HOH . E 5 HOH A 74 374 2 HOH HOH . E 5 HOH A 75 375 34 HOH HOH . E 5 HOH A 76 376 30 HOH HOH . E 5 HOH A 77 377 62 HOH HOH . E 5 HOH A 78 378 97 HOH HOH . E 5 HOH A 79 379 20 HOH HOH . E 5 HOH A 80 380 74 HOH HOH . E 5 HOH A 81 381 135 HOH HOH . E 5 HOH A 82 382 18 HOH HOH . E 5 HOH A 83 383 15 HOH HOH . E 5 HOH A 84 384 112 HOH HOH . E 5 HOH A 85 385 105 HOH HOH . E 5 HOH A 86 386 104 HOH HOH . E 5 HOH A 87 387 48 HOH HOH . E 5 HOH A 88 388 152 HOH HOH . E 5 HOH A 89 389 96 HOH HOH . E 5 HOH A 90 390 58 HOH HOH . E 5 HOH A 91 391 49 HOH HOH . E 5 HOH A 92 392 100 HOH HOH . E 5 HOH A 93 393 40 HOH HOH . E 5 HOH A 94 394 12 HOH HOH . E 5 HOH A 95 395 91 HOH HOH . E 5 HOH A 96 396 38 HOH HOH . E 5 HOH A 97 397 64 HOH HOH . E 5 HOH A 98 398 33 HOH HOH . E 5 HOH A 99 399 165 HOH HOH . E 5 HOH A 100 400 85 HOH HOH . E 5 HOH A 101 401 80 HOH HOH . E 5 HOH A 102 402 178 HOH HOH . E 5 HOH A 103 403 94 HOH HOH . E 5 HOH A 104 404 26 HOH HOH . E 5 HOH A 105 405 75 HOH HOH . E 5 HOH A 106 406 53 HOH HOH . E 5 HOH A 107 407 63 HOH HOH . E 5 HOH A 108 408 81 HOH HOH . E 5 HOH A 109 409 77 HOH HOH . E 5 HOH A 110 410 84 HOH HOH . E 5 HOH A 111 411 67 HOH HOH . E 5 HOH A 112 412 68 HOH HOH . E 5 HOH A 113 413 168 HOH HOH . E 5 HOH A 114 414 56 HOH HOH . E 5 HOH A 115 415 88 HOH HOH . E 5 HOH A 116 416 19 HOH HOH . E 5 HOH A 117 417 41 HOH HOH . E 5 HOH A 118 418 176 HOH HOH . E 5 HOH A 119 419 139 HOH HOH . E 5 HOH A 120 420 142 HOH HOH . E 5 HOH A 121 421 72 HOH HOH . E 5 HOH A 122 422 101 HOH HOH . E 5 HOH A 123 423 90 HOH HOH . E 5 HOH A 124 424 86 HOH HOH . E 5 HOH A 125 425 175 HOH HOH . E 5 HOH A 126 426 124 HOH HOH . E 5 HOH A 127 427 122 HOH HOH . E 5 HOH A 128 428 123 HOH HOH . E 5 HOH A 129 429 147 HOH HOH . E 5 HOH A 130 430 132 HOH HOH . E 5 HOH A 131 431 138 HOH HOH . E 5 HOH A 132 432 125 HOH HOH . E 5 HOH A 133 433 24 HOH HOH . E 5 HOH A 134 434 118 HOH HOH . E 5 HOH A 135 435 106 HOH HOH . E 5 HOH A 136 436 126 HOH HOH . E 5 HOH A 137 437 108 HOH HOH . E 5 HOH A 138 438 79 HOH HOH . E 5 HOH A 139 439 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 VCA . B . C 3 -2.687 25.096 1.034 0.51 33.86 ? O2 VCA 202 A 1 HETATM 2 C C1 VCA . B . C 3 -2.214 24.176 0.318 0.51 35.98 ? C1 VCA 202 A 1 HETATM 3 O O1 VCA . B . C 3 -2.811 23.067 0.241 0.51 36.25 ? O1 VCA 202 A 1 HETATM 4 C C2 VCA . B . C 3 -0.935 24.411 -0.457 0.51 38.45 ? C2 VCA 202 A 1 HETATM 5 C C3 VCA . B . C 3 -1.28 25.156 -1.727 0.51 36.32 ? C3 VCA 202 A 1 HETATM 6 C C4 VCA . B . C 3 -0.04 25.453 -2.538 0.51 43.76 ? C4 VCA 202 A 1 HETATM 7 C C5 VCA . B . C 3 -0.463 26.144 -3.817 0.51 38.54 ? C5 VCA 202 A 1 HETATM 8 C C6 VCA . B . C 3 0.753 26.516 -4.637 0.51 42.59 ? C6 VCA 202 A 1 HETATM 9 C C7 VCA . B . C 3 0.332 27.213 -5.918 0.51 38.11 ? C7 VCA 202 A 1 HETATM 10 C C8 VCA . B . C 3 -0.194 28.6 -5.613 0.51 38.89 ? C8 VCA 202 A 1 HETATM 11 C C9 VCA . B . C 3 -0.206 29.45 -6.867 0.51 37.5 ? C9 VCA 202 A 1 HETATM 12 C C10 VCA . B . C 3 -1.343 29.03 -7.77 0.51 35.4 ? C10 VCA 202 A 1 HETATM 13 C C11 VCA . B . C 3 -2.289 30.194 -8 0.51 38.96 ? C11 VCA 202 A 1 HETATM 14 C C12 VCA . B . C 3 -3.333 30.446 -7.179 0.51 39.54 ? C12 VCA 202 A 1 HETATM 15 C C13 VCA . B . C 3 -3.595 29.572 -5.974 0.51 41.91 ? C13 VCA 202 A 1 HETATM 16 C C14 VCA . B . C 3 -5.015 29.712 -5.469 0.51 37.74 ? C14 VCA 202 A 1 HETATM 17 C C15 VCA . B . C 3 -5.813 28.498 -5.907 0.51 35.26 ? C15 VCA 202 A 1 HETATM 18 C C16 VCA . B . C 3 -5.492 27.2 -5.177 0.51 39.13 ? C16 VCA 202 A 1 HETATM 19 C C17 VCA . B . C 3 -4.505 27.323 -4.03 0.51 39.2 ? C17 VCA 202 A 1 HETATM 20 C C18 VCA . B . C 3 -4.159 25.935 -3.546 0.51 45.9 ? C18 VCA 202 A 1 HETATM 21 H H21 VCA . B . C 3 -0.522 23.553 -0.679 0.51 46.14 ? H21 VCA 202 A 1 HETATM 22 H H22 VCA . B . C 3 -0.317 24.945 0.081 0.51 46.14 ? H22 VCA 202 A 1 HETATM 23 H H31 VCA . B . C 3 -1.721 25.997 -1.496 0.51 43.58 ? H31 VCA 202 A 1 HETATM 24 H H32 VCA . B . C 3 -1.89 24.61 -2.263 0.51 43.58 ? H32 VCA 202 A 1 HETATM 25 H H41 VCA . B . C 3 0.422 24.618 -2.752 0.51 52.51 ? H41 VCA 202 A 1 HETATM 26 H H42 VCA . B . C 3 0.555 26.038 -2.028 0.51 52.51 ? H42 VCA 202 A 1 HETATM 27 H H51 VCA . B . C 3 -0.965 26.955 -3.596 0.51 46.25 ? H51 VCA 202 A 1 HETATM 28 H H52 VCA . B . C 3 -1.033 25.543 -4.337 0.51 46.25 ? H52 VCA 202 A 1 HETATM 29 H H61 VCA . B . C 3 1.253 25.705 -4.86 0.51 51.11 ? H61 VCA 202 A 1 HETATM 30 H H62 VCA . B . C 3 1.324 27.115 -4.116 0.51 51.11 ? H62 VCA 202 A 1 HETATM 31 H H71 VCA . B . C 3 -0.37 26.69 -6.355 0.51 45.73 ? H71 VCA 202 A 1 HETATM 32 H H72 VCA . B . C 3 1.103 27.283 -6.516 0.51 45.73 ? H72 VCA 202 A 1 HETATM 33 H H81 VCA . B . C 3 0.38 29.022 -4.942 0.51 46.67 ? H81 VCA 202 A 1 HETATM 34 H H82 VCA . B . C 3 -1.104 28.53 -5.261 0.51 46.67 ? H82 VCA 202 A 1 HETATM 35 H H91 VCA . B . C 3 0.642 29.339 -7.341 0.51 45 ? H91 VCA 202 A 1 HETATM 36 H H92 VCA . B . C 3 -0.318 30.389 -6.62 0.51 45 ? H92 VCA 202 A 1 HETATM 37 H H101 VCA . B . C 3 -1.832 28.293 -7.353 0.51 42.48 ? H101 VCA 202 A 1 HETATM 38 H H102 VCA . B . C 3 -0.981 28.733 -8.629 0.51 42.48 ? H102 VCA 202 A 1 HETATM 39 H H11 VCA . B . C 3 -2.144 30.775 -8.771 0.51 46.76 ? H11 VCA 202 A 1 HETATM 40 H H12 VCA . B . C 3 -3.919 31.205 -7.362 0.51 47.45 ? H12 VCA 202 A 1 HETATM 41 H H131 VCA . B . C 3 -2.977 29.823 -5.259 0.51 50.29 ? H131 VCA 202 A 1 HETATM 42 H H132 VCA . B . C 3 -3.435 28.638 -6.218 0.51 50.29 ? H132 VCA 202 A 1 HETATM 43 H H141 VCA . B . C 3 -5.417 30.521 -5.842 0.51 45.29 ? H141 VCA 202 A 1 HETATM 44 H H142 VCA . B . C 3 -5.011 29.767 -4.493 0.51 45.29 ? H142 VCA 202 A 1 HETATM 45 H H151 VCA . B . C 3 -5.655 28.358 -6.862 0.51 42.31 ? H151 VCA 202 A 1 HETATM 46 H H152 VCA . B . C 3 -6.762 28.695 -5.778 0.51 42.31 ? H152 VCA 202 A 1 HETATM 47 H H161 VCA . B . C 3 -5.129 26.566 -5.826 0.51 46.95 ? H161 VCA 202 A 1 HETATM 48 H H162 VCA . B . C 3 -6.328 26.834 -4.823 0.51 46.95 ? H162 VCA 202 A 1 HETATM 49 H H171 VCA . B . C 3 -4.91 27.834 -3.301 0.51 47.04 ? H171 VCA 202 A 1 HETATM 50 H H172 VCA . B . C 3 -3.696 27.776 -4.339 0.51 47.04 ? H172 VCA 202 A 1 HETATM 51 H H181 VCA . B . C 3 -4.982 25.451 -3.324 0.51 55.08 ? H181 VCA 202 A 1 HETATM 52 H H182 VCA . B . C 3 -3.593 25.998 -2.749 0.51 55.08 ? H182 VCA 202 A 1 HETATM 53 H H183 VCA . B . C 3 -3.678 25.454 -4.251 0.51 55.08 ? H183 VCA 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #