data_5N4Q
#
_model_server_result.job_id            IFTcVM_zZO-3mCA4Q-TUuA 
_model_server_result.datetime_utc      '2024-11-01 19:35:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n4q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5N4Q 
#
_exptl.entry_id    5N4Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N4Q 
_cell.length_a            66.024 
_cell.length_b            66.024 
_cell.length_c            100.859 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N4Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 216 n n 
C1 O2 MLT sing 217 n n 
C1 C2 MLT sing 218 n n 
C2 O3 MLT sing 219 n n 
C2 C3 MLT sing 220 n n 
C2 H2 MLT sing 221 n n 
O3 HO3 MLT sing 222 n n 
C3 C4 MLT sing 223 n n 
C3 H31 MLT sing 224 n n 
C3 H32 MLT sing 225 n n 
C4 O4 MLT doub 226 n n 
C4 O5 MLT sing 227 n n 
O5 HO5 MLT sing 228 n n 
O2 H6 MLT sing 229 n n 
#
_atom_sites.entry_id                     5N4Q 
_atom_sites.fract_transf_matrix[1][1]    0.015146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLM A 1 201 1 PLM PLM . 
C 3 VCA A 1 202 1 VCA VCA . 
D 4 MLT A 1 203 1 MLT MLT . 
E 5 HOH A 1 301 157 HOH HOH . 
E 5 HOH A 2 302 177 HOH HOH . 
E 5 HOH A 3 303 43 HOH HOH . 
E 5 HOH A 4 304 92 HOH HOH . 
E 5 HOH A 5 305 109 HOH HOH . 
E 5 HOH A 6 306 54 HOH HOH . 
E 5 HOH A 7 307 37 HOH HOH . 
E 5 HOH A 8 308 57 HOH HOH . 
E 5 HOH A 9 309 50 HOH HOH . 
E 5 HOH A 10 310 153 HOH HOH . 
E 5 HOH A 11 311 150 HOH HOH . 
E 5 HOH A 12 312 39 HOH HOH . 
E 5 HOH A 13 313 3 HOH HOH . 
E 5 HOH A 14 314 76 HOH HOH . 
E 5 HOH A 15 315 10 HOH HOH . 
E 5 HOH A 16 316 161 HOH HOH . 
E 5 HOH A 17 317 102 HOH HOH . 
E 5 HOH A 18 318 44 HOH HOH . 
E 5 HOH A 19 319 160 HOH HOH . 
E 5 HOH A 20 320 45 HOH HOH . 
E 5 HOH A 21 321 13 HOH HOH . 
E 5 HOH A 22 322 70 HOH HOH . 
E 5 HOH A 23 323 46 HOH HOH . 
E 5 HOH A 24 324 156 HOH HOH . 
E 5 HOH A 25 325 73 HOH HOH . 
E 5 HOH A 26 326 29 HOH HOH . 
E 5 HOH A 27 327 55 HOH HOH . 
E 5 HOH A 28 328 31 HOH HOH . 
E 5 HOH A 29 329 174 HOH HOH . 
E 5 HOH A 30 330 14 HOH HOH . 
E 5 HOH A 31 331 89 HOH HOH . 
E 5 HOH A 32 332 16 HOH HOH . 
E 5 HOH A 33 333 52 HOH HOH . 
E 5 HOH A 34 334 78 HOH HOH . 
E 5 HOH A 35 335 7 HOH HOH . 
E 5 HOH A 36 336 59 HOH HOH . 
E 5 HOH A 37 337 47 HOH HOH . 
E 5 HOH A 38 338 113 HOH HOH . 
E 5 HOH A 39 339 11 HOH HOH . 
E 5 HOH A 40 340 6 HOH HOH . 
E 5 HOH A 41 341 28 HOH HOH . 
E 5 HOH A 42 342 51 HOH HOH . 
E 5 HOH A 43 343 99 HOH HOH . 
E 5 HOH A 44 344 36 HOH HOH . 
E 5 HOH A 45 345 4 HOH HOH . 
E 5 HOH A 46 346 155 HOH HOH . 
E 5 HOH A 47 347 169 HOH HOH . 
E 5 HOH A 48 348 9 HOH HOH . 
E 5 HOH A 49 349 83 HOH HOH . 
E 5 HOH A 50 350 117 HOH HOH . 
E 5 HOH A 51 351 35 HOH HOH . 
E 5 HOH A 52 352 22 HOH HOH . 
E 5 HOH A 53 353 110 HOH HOH . 
E 5 HOH A 54 354 71 HOH HOH . 
E 5 HOH A 55 355 42 HOH HOH . 
E 5 HOH A 56 356 107 HOH HOH . 
E 5 HOH A 57 357 145 HOH HOH . 
E 5 HOH A 58 358 128 HOH HOH . 
E 5 HOH A 59 359 166 HOH HOH . 
E 5 HOH A 60 360 5 HOH HOH . 
E 5 HOH A 61 361 162 HOH HOH . 
E 5 HOH A 62 362 32 HOH HOH . 
E 5 HOH A 63 363 8 HOH HOH . 
E 5 HOH A 64 364 69 HOH HOH . 
E 5 HOH A 65 365 82 HOH HOH . 
E 5 HOH A 66 366 17 HOH HOH . 
E 5 HOH A 67 367 25 HOH HOH . 
E 5 HOH A 68 368 98 HOH HOH . 
E 5 HOH A 69 369 66 HOH HOH . 
E 5 HOH A 70 370 65 HOH HOH . 
E 5 HOH A 71 371 21 HOH HOH . 
E 5 HOH A 72 372 27 HOH HOH . 
E 5 HOH A 73 373 23 HOH HOH . 
E 5 HOH A 74 374 2 HOH HOH . 
E 5 HOH A 75 375 34 HOH HOH . 
E 5 HOH A 76 376 30 HOH HOH . 
E 5 HOH A 77 377 62 HOH HOH . 
E 5 HOH A 78 378 97 HOH HOH . 
E 5 HOH A 79 379 20 HOH HOH . 
E 5 HOH A 80 380 74 HOH HOH . 
E 5 HOH A 81 381 135 HOH HOH . 
E 5 HOH A 82 382 18 HOH HOH . 
E 5 HOH A 83 383 15 HOH HOH . 
E 5 HOH A 84 384 112 HOH HOH . 
E 5 HOH A 85 385 105 HOH HOH . 
E 5 HOH A 86 386 104 HOH HOH . 
E 5 HOH A 87 387 48 HOH HOH . 
E 5 HOH A 88 388 152 HOH HOH . 
E 5 HOH A 89 389 96 HOH HOH . 
E 5 HOH A 90 390 58 HOH HOH . 
E 5 HOH A 91 391 49 HOH HOH . 
E 5 HOH A 92 392 100 HOH HOH . 
E 5 HOH A 93 393 40 HOH HOH . 
E 5 HOH A 94 394 12 HOH HOH . 
E 5 HOH A 95 395 91 HOH HOH . 
E 5 HOH A 96 396 38 HOH HOH . 
E 5 HOH A 97 397 64 HOH HOH . 
E 5 HOH A 98 398 33 HOH HOH . 
E 5 HOH A 99 399 165 HOH HOH . 
E 5 HOH A 100 400 85 HOH HOH . 
E 5 HOH A 101 401 80 HOH HOH . 
E 5 HOH A 102 402 178 HOH HOH . 
E 5 HOH A 103 403 94 HOH HOH . 
E 5 HOH A 104 404 26 HOH HOH . 
E 5 HOH A 105 405 75 HOH HOH . 
E 5 HOH A 106 406 53 HOH HOH . 
E 5 HOH A 107 407 63 HOH HOH . 
E 5 HOH A 108 408 81 HOH HOH . 
E 5 HOH A 109 409 77 HOH HOH . 
E 5 HOH A 110 410 84 HOH HOH . 
E 5 HOH A 111 411 67 HOH HOH . 
E 5 HOH A 112 412 68 HOH HOH . 
E 5 HOH A 113 413 168 HOH HOH . 
E 5 HOH A 114 414 56 HOH HOH . 
E 5 HOH A 115 415 88 HOH HOH . 
E 5 HOH A 116 416 19 HOH HOH . 
E 5 HOH A 117 417 41 HOH HOH . 
E 5 HOH A 118 418 176 HOH HOH . 
E 5 HOH A 119 419 139 HOH HOH . 
E 5 HOH A 120 420 142 HOH HOH . 
E 5 HOH A 121 421 72 HOH HOH . 
E 5 HOH A 122 422 101 HOH HOH . 
E 5 HOH A 123 423 90 HOH HOH . 
E 5 HOH A 124 424 86 HOH HOH . 
E 5 HOH A 125 425 175 HOH HOH . 
E 5 HOH A 126 426 124 HOH HOH . 
E 5 HOH A 127 427 122 HOH HOH . 
E 5 HOH A 128 428 123 HOH HOH . 
E 5 HOH A 129 429 147 HOH HOH . 
E 5 HOH A 130 430 132 HOH HOH . 
E 5 HOH A 131 431 138 HOH HOH . 
E 5 HOH A 132 432 125 HOH HOH . 
E 5 HOH A 133 433 24 HOH HOH . 
E 5 HOH A 134 434 118 HOH HOH . 
E 5 HOH A 135 435 106 HOH HOH . 
E 5 HOH A 136 436 126 HOH HOH . 
E 5 HOH A 137 437 108 HOH HOH . 
E 5 HOH A 138 438 79 HOH HOH . 
E 5 HOH A 139 439 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . . . D 4 -12.947 30.691 -2.92 0.83 32.71 ? C1 MLT 203 A 1 
HETATM 2 O O1 MLT . . . D 4 -13.604 30.18 -3.843 0.83 42.72 ? O1 MLT 203 A 1 
HETATM 3 O O2 MLT . . . D 4 -11.749 30.958 -3.104 0.83 29.4 ? O2 MLT 203 A 1 
HETATM 4 C C2 MLT . . . D 4 -13.607 30.981 -1.601 0.83 43.19 ? C2 MLT 203 A 1 
HETATM 5 O O3 MLT . . . D 4 -14.945 30.533 -1.657 0.83 50.09 ? O3 MLT 203 A 1 
HETATM 6 C C3 MLT . . . D 4 -13.555 32.475 -1.294 0.83 44.06 ? C3 MLT 203 A 1 
HETATM 7 C C4 MLT . . . D 4 -14.189 32.761 0.052 0.83 59.36 ? C4 MLT 203 A 1 
HETATM 8 O O4 MLT . . . D 4 -14.565 33.918 0.337 0.83 63.76 ? O4 MLT 203 A 1 
HETATM 9 O O5 MLT . . . D 4 -14.349 31.851 0.9 0.83 49.38 ? O5 MLT 203 A 1 
HETATM 10 H H2 MLT . . . D 4 -13.075 30.447 -0.813 0.83 51.82 ? H2 MLT 203 A 1 
HETATM 11 H HO3 MLT . . . D 4 -15.549 31.286 -1.486 0.83 60.11 ? HO3 MLT 203 A 1 
HETATM 12 H H31 MLT . . . D 4 -12.518 32.811 -1.289 0.83 52.87 ? H31 MLT 203 A 1 
HETATM 13 H H32 MLT . . . D 4 -14.084 33.026 -2.072 0.83 52.87 ? H32 MLT 203 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#