data_5N4Q # _model_server_result.job_id Doob6j7NdbSW6LLwiMuosg _model_server_result.datetime_utc '2024-11-26 12:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5N4Q # _exptl.entry_id 5N4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N4Q _cell.length_a 66.024 _cell.length_b 66.024 _cell.length_c 100.859 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 216 n n C1 O2 MLT sing 217 n n C1 C2 MLT sing 218 n n C2 O3 MLT sing 219 n n C2 C3 MLT sing 220 n n C2 H2 MLT sing 221 n n O3 HO3 MLT sing 222 n n C3 C4 MLT sing 223 n n C3 H31 MLT sing 224 n n C3 H32 MLT sing 225 n n C4 O4 MLT doub 226 n n C4 O5 MLT sing 227 n n O5 HO5 MLT sing 228 n n O2 H6 MLT sing 229 n n # _atom_sites.entry_id 5N4Q _atom_sites.fract_transf_matrix[1][1] 0.015146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 1 PLM PLM . C 3 VCA A 1 202 1 VCA VCA . D 4 MLT A 1 203 1 MLT MLT . E 5 HOH A 1 301 157 HOH HOH . E 5 HOH A 2 302 177 HOH HOH . E 5 HOH A 3 303 43 HOH HOH . E 5 HOH A 4 304 92 HOH HOH . E 5 HOH A 5 305 109 HOH HOH . E 5 HOH A 6 306 54 HOH HOH . E 5 HOH A 7 307 37 HOH HOH . E 5 HOH A 8 308 57 HOH HOH . E 5 HOH A 9 309 50 HOH HOH . E 5 HOH A 10 310 153 HOH HOH . E 5 HOH A 11 311 150 HOH HOH . E 5 HOH A 12 312 39 HOH HOH . E 5 HOH A 13 313 3 HOH HOH . E 5 HOH A 14 314 76 HOH HOH . E 5 HOH A 15 315 10 HOH HOH . E 5 HOH A 16 316 161 HOH HOH . E 5 HOH A 17 317 102 HOH HOH . E 5 HOH A 18 318 44 HOH HOH . E 5 HOH A 19 319 160 HOH HOH . E 5 HOH A 20 320 45 HOH HOH . E 5 HOH A 21 321 13 HOH HOH . E 5 HOH A 22 322 70 HOH HOH . E 5 HOH A 23 323 46 HOH HOH . E 5 HOH A 24 324 156 HOH HOH . E 5 HOH A 25 325 73 HOH HOH . E 5 HOH A 26 326 29 HOH HOH . E 5 HOH A 27 327 55 HOH HOH . E 5 HOH A 28 328 31 HOH HOH . E 5 HOH A 29 329 174 HOH HOH . E 5 HOH A 30 330 14 HOH HOH . E 5 HOH A 31 331 89 HOH HOH . E 5 HOH A 32 332 16 HOH HOH . E 5 HOH A 33 333 52 HOH HOH . E 5 HOH A 34 334 78 HOH HOH . E 5 HOH A 35 335 7 HOH HOH . E 5 HOH A 36 336 59 HOH HOH . E 5 HOH A 37 337 47 HOH HOH . E 5 HOH A 38 338 113 HOH HOH . E 5 HOH A 39 339 11 HOH HOH . E 5 HOH A 40 340 6 HOH HOH . E 5 HOH A 41 341 28 HOH HOH . E 5 HOH A 42 342 51 HOH HOH . E 5 HOH A 43 343 99 HOH HOH . E 5 HOH A 44 344 36 HOH HOH . E 5 HOH A 45 345 4 HOH HOH . E 5 HOH A 46 346 155 HOH HOH . E 5 HOH A 47 347 169 HOH HOH . E 5 HOH A 48 348 9 HOH HOH . E 5 HOH A 49 349 83 HOH HOH . E 5 HOH A 50 350 117 HOH HOH . E 5 HOH A 51 351 35 HOH HOH . E 5 HOH A 52 352 22 HOH HOH . E 5 HOH A 53 353 110 HOH HOH . E 5 HOH A 54 354 71 HOH HOH . E 5 HOH A 55 355 42 HOH HOH . E 5 HOH A 56 356 107 HOH HOH . E 5 HOH A 57 357 145 HOH HOH . E 5 HOH A 58 358 128 HOH HOH . E 5 HOH A 59 359 166 HOH HOH . E 5 HOH A 60 360 5 HOH HOH . E 5 HOH A 61 361 162 HOH HOH . E 5 HOH A 62 362 32 HOH HOH . E 5 HOH A 63 363 8 HOH HOH . E 5 HOH A 64 364 69 HOH HOH . E 5 HOH A 65 365 82 HOH HOH . E 5 HOH A 66 366 17 HOH HOH . E 5 HOH A 67 367 25 HOH HOH . E 5 HOH A 68 368 98 HOH HOH . E 5 HOH A 69 369 66 HOH HOH . E 5 HOH A 70 370 65 HOH HOH . E 5 HOH A 71 371 21 HOH HOH . E 5 HOH A 72 372 27 HOH HOH . E 5 HOH A 73 373 23 HOH HOH . E 5 HOH A 74 374 2 HOH HOH . E 5 HOH A 75 375 34 HOH HOH . E 5 HOH A 76 376 30 HOH HOH . E 5 HOH A 77 377 62 HOH HOH . E 5 HOH A 78 378 97 HOH HOH . E 5 HOH A 79 379 20 HOH HOH . E 5 HOH A 80 380 74 HOH HOH . E 5 HOH A 81 381 135 HOH HOH . E 5 HOH A 82 382 18 HOH HOH . E 5 HOH A 83 383 15 HOH HOH . E 5 HOH A 84 384 112 HOH HOH . E 5 HOH A 85 385 105 HOH HOH . E 5 HOH A 86 386 104 HOH HOH . E 5 HOH A 87 387 48 HOH HOH . E 5 HOH A 88 388 152 HOH HOH . E 5 HOH A 89 389 96 HOH HOH . E 5 HOH A 90 390 58 HOH HOH . E 5 HOH A 91 391 49 HOH HOH . E 5 HOH A 92 392 100 HOH HOH . E 5 HOH A 93 393 40 HOH HOH . E 5 HOH A 94 394 12 HOH HOH . E 5 HOH A 95 395 91 HOH HOH . E 5 HOH A 96 396 38 HOH HOH . E 5 HOH A 97 397 64 HOH HOH . E 5 HOH A 98 398 33 HOH HOH . E 5 HOH A 99 399 165 HOH HOH . E 5 HOH A 100 400 85 HOH HOH . E 5 HOH A 101 401 80 HOH HOH . E 5 HOH A 102 402 178 HOH HOH . E 5 HOH A 103 403 94 HOH HOH . E 5 HOH A 104 404 26 HOH HOH . E 5 HOH A 105 405 75 HOH HOH . E 5 HOH A 106 406 53 HOH HOH . E 5 HOH A 107 407 63 HOH HOH . E 5 HOH A 108 408 81 HOH HOH . E 5 HOH A 109 409 77 HOH HOH . E 5 HOH A 110 410 84 HOH HOH . E 5 HOH A 111 411 67 HOH HOH . E 5 HOH A 112 412 68 HOH HOH . E 5 HOH A 113 413 168 HOH HOH . E 5 HOH A 114 414 56 HOH HOH . E 5 HOH A 115 415 88 HOH HOH . E 5 HOH A 116 416 19 HOH HOH . E 5 HOH A 117 417 41 HOH HOH . E 5 HOH A 118 418 176 HOH HOH . E 5 HOH A 119 419 139 HOH HOH . E 5 HOH A 120 420 142 HOH HOH . E 5 HOH A 121 421 72 HOH HOH . E 5 HOH A 122 422 101 HOH HOH . E 5 HOH A 123 423 90 HOH HOH . E 5 HOH A 124 424 86 HOH HOH . E 5 HOH A 125 425 175 HOH HOH . E 5 HOH A 126 426 124 HOH HOH . E 5 HOH A 127 427 122 HOH HOH . E 5 HOH A 128 428 123 HOH HOH . E 5 HOH A 129 429 147 HOH HOH . E 5 HOH A 130 430 132 HOH HOH . E 5 HOH A 131 431 138 HOH HOH . E 5 HOH A 132 432 125 HOH HOH . E 5 HOH A 133 433 24 HOH HOH . E 5 HOH A 134 434 118 HOH HOH . E 5 HOH A 135 435 106 HOH HOH . E 5 HOH A 136 436 126 HOH HOH . E 5 HOH A 137 437 108 HOH HOH . E 5 HOH A 138 438 79 HOH HOH . E 5 HOH A 139 439 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 4 -12.947 30.691 -2.92 0.83 32.71 ? C1 MLT 203 A 1 HETATM 2 O O1 MLT . . . D 4 -13.604 30.18 -3.843 0.83 42.72 ? O1 MLT 203 A 1 HETATM 3 O O2 MLT . . . D 4 -11.749 30.958 -3.104 0.83 29.4 ? O2 MLT 203 A 1 HETATM 4 C C2 MLT . . . D 4 -13.607 30.981 -1.601 0.83 43.19 ? C2 MLT 203 A 1 HETATM 5 O O3 MLT . . . D 4 -14.945 30.533 -1.657 0.83 50.09 ? O3 MLT 203 A 1 HETATM 6 C C3 MLT . . . D 4 -13.555 32.475 -1.294 0.83 44.06 ? C3 MLT 203 A 1 HETATM 7 C C4 MLT . . . D 4 -14.189 32.761 0.052 0.83 59.36 ? C4 MLT 203 A 1 HETATM 8 O O4 MLT . . . D 4 -14.565 33.918 0.337 0.83 63.76 ? O4 MLT 203 A 1 HETATM 9 O O5 MLT . . . D 4 -14.349 31.851 0.9 0.83 49.38 ? O5 MLT 203 A 1 HETATM 10 H H2 MLT . . . D 4 -13.075 30.447 -0.813 0.83 51.82 ? H2 MLT 203 A 1 HETATM 11 H HO3 MLT . . . D 4 -15.549 31.286 -1.486 0.83 60.11 ? HO3 MLT 203 A 1 HETATM 12 H H31 MLT . . . D 4 -12.518 32.811 -1.289 0.83 52.87 ? H31 MLT 203 A 1 HETATM 13 H H32 MLT . . . D 4 -14.084 33.026 -2.072 0.83 52.87 ? H32 MLT 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 755 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #