data_5N58
#
_model_server_result.job_id            jaqySQSTIepW5c0c9F4DcA 
_model_server_result.datetime_utc      '2024-11-14 17:29:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    5N58 
#
_exptl.entry_id    5N58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N58 
_cell.length_a            54.471 
_cell.length_b            81.54 
_cell.length_c            95.892 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,J 1 1 
B,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 114 A HIS 114 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc2 A ND1 HIS 116 A HIS 116 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc4 A NE2 HIS 179 A HIS 179 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc5 A SG CYS 198 A CYS 198 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc6 A NE2 HIS 240 A HIS 240 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc7 C ZN ZN . A ZN 501 1_555 J O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc8 B NE2 HIS 114 B HIS 114 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc9 B ND1 HIS 116 B HIS 116 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc10 B NE2 HIS 179 B HIS 179 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 177 n n 
C1 C2 GOL sing 178 n n 
C1 H11 GOL sing 179 n n 
C1 H12 GOL sing 180 n n 
O1 HO1 GOL sing 181 n n 
C2 O2 GOL sing 182 n n 
C2 C3 GOL sing 183 n n 
C2 H2 GOL sing 184 n n 
O2 HO2 GOL sing 185 n n 
C3 O3 GOL sing 186 n n 
C3 H31 GOL sing 187 n n 
C3 H32 GOL sing 188 n n 
O3 HO3 GOL sing 189 n n 
#
_atom_sites.entry_id                     5N58 
_atom_sites.fract_transf_matrix[1][1]    0.018358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010428 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 501 501 ZN ZN . 
D 3 93W A 1 502 503 93W B73 . 
E 4 GOL A 1 503 601 GOL GOL . 
F 4 GOL A 1 504 602 GOL GOL . 
G 2 ZN A 1 505 1 ZN ZN . 
H 2 ZN B 1 501 501 ZN ZN . 
I 3 93W B 1 502 503 93W B73 . 
J 5 HOH A 1 601 706 HOH HOH . 
J 5 HOH A 2 602 721 HOH HOH . 
J 5 HOH A 3 603 808 HOH HOH . 
J 5 HOH A 4 604 792 HOH HOH . 
J 5 HOH A 5 605 752 HOH HOH . 
J 5 HOH A 6 606 716 HOH HOH . 
J 5 HOH A 7 607 824 HOH HOH . 
J 5 HOH A 8 608 793 HOH HOH . 
J 5 HOH A 9 609 719 HOH HOH . 
J 5 HOH A 10 610 735 HOH HOH . 
J 5 HOH A 11 611 750 HOH HOH . 
J 5 HOH A 12 612 802 HOH HOH . 
J 5 HOH A 13 613 842 HOH HOH . 
J 5 HOH A 14 614 753 HOH HOH . 
J 5 HOH A 15 615 736 HOH HOH . 
J 5 HOH A 16 616 754 HOH HOH . 
J 5 HOH A 17 617 771 HOH HOH . 
J 5 HOH A 18 618 760 HOH HOH . 
J 5 HOH A 19 619 782 HOH HOH . 
J 5 HOH A 20 620 806 HOH HOH . 
J 5 HOH A 21 621 761 HOH HOH . 
J 5 HOH A 22 622 705 HOH HOH . 
J 5 HOH A 23 623 765 HOH HOH . 
J 5 HOH A 24 624 749 HOH HOH . 
J 5 HOH A 25 625 815 HOH HOH . 
J 5 HOH A 26 626 707 HOH HOH . 
J 5 HOH A 27 627 2 HOH HOH . 
J 5 HOH A 28 628 751 HOH HOH . 
J 5 HOH A 29 629 809 HOH HOH . 
J 5 HOH A 30 630 741 HOH HOH . 
J 5 HOH A 31 631 822 HOH HOH . 
J 5 HOH A 32 632 814 HOH HOH . 
J 5 HOH A 33 633 704 HOH HOH . 
J 5 HOH A 34 634 801 HOH HOH . 
J 5 HOH A 35 635 713 HOH HOH . 
J 5 HOH A 36 636 725 HOH HOH . 
J 5 HOH A 37 637 820 HOH HOH . 
J 5 HOH A 38 638 737 HOH HOH . 
J 5 HOH A 39 639 734 HOH HOH . 
J 5 HOH A 40 640 722 HOH HOH . 
J 5 HOH A 41 641 785 HOH HOH . 
J 5 HOH A 42 642 775 HOH HOH . 
J 5 HOH A 43 643 714 HOH HOH . 
J 5 HOH A 44 644 752 HOH HOH . 
J 5 HOH A 45 645 745 HOH HOH . 
J 5 HOH A 46 646 829 HOH HOH . 
J 5 HOH A 47 647 727 HOH HOH . 
J 5 HOH A 48 648 743 HOH HOH . 
J 5 HOH A 49 649 758 HOH HOH . 
J 5 HOH A 50 650 739 HOH HOH . 
J 5 HOH A 51 651 825 HOH HOH . 
J 5 HOH A 52 652 755 HOH HOH . 
J 5 HOH A 53 653 803 HOH HOH . 
J 5 HOH A 54 654 760 HOH HOH . 
J 5 HOH A 55 655 723 HOH HOH . 
J 5 HOH A 56 656 783 HOH HOH . 
J 5 HOH A 57 657 775 HOH HOH . 
J 5 HOH A 58 658 778 HOH HOH . 
J 5 HOH A 59 659 738 HOH HOH . 
J 5 HOH A 60 660 800 HOH HOH . 
J 5 HOH A 61 661 794 HOH HOH . 
J 5 HOH A 62 662 703 HOH HOH . 
J 5 HOH A 63 663 804 HOH HOH . 
J 5 HOH A 64 664 823 HOH HOH . 
J 5 HOH A 65 665 766 HOH HOH . 
J 5 HOH A 66 666 817 HOH HOH . 
J 5 HOH A 67 667 705 HOH HOH . 
J 5 HOH A 68 668 807 HOH HOH . 
J 5 HOH A 69 669 723 HOH HOH . 
J 5 HOH A 70 670 779 HOH HOH . 
J 5 HOH A 71 671 3 HOH HOH . 
J 5 HOH A 72 672 772 HOH HOH . 
J 5 HOH A 73 673 818 HOH HOH . 
J 5 HOH A 74 674 735 HOH HOH . 
J 5 HOH A 75 675 740 HOH HOH . 
J 5 HOH A 76 676 816 HOH HOH . 
J 5 HOH A 77 677 707 HOH HOH . 
J 5 HOH A 78 678 802 HOH HOH . 
J 5 HOH A 79 679 729 HOH HOH . 
J 5 HOH A 80 680 788 HOH HOH . 
J 5 HOH A 81 681 748 HOH HOH . 
J 5 HOH A 82 682 4 HOH HOH . 
J 5 HOH A 83 683 796 HOH HOH . 
J 5 HOH A 84 684 840 HOH HOH . 
J 5 HOH A 85 685 811 HOH HOH . 
J 5 HOH A 86 686 771 HOH HOH . 
J 5 HOH A 87 687 803 HOH HOH . 
J 5 HOH A 88 688 825 HOH HOH . 
J 5 HOH A 89 689 740 HOH HOH . 
J 5 HOH A 90 690 781 HOH HOH . 
J 5 HOH A 91 691 763 HOH HOH . 
J 5 HOH A 92 692 714 HOH HOH . 
J 5 HOH A 93 693 811 HOH HOH . 
J 5 HOH A 94 694 836 HOH HOH . 
J 5 HOH A 95 695 799 HOH HOH . 
J 5 HOH A 96 696 759 HOH HOH . 
J 5 HOH A 97 697 838 HOH HOH . 
J 5 HOH A 98 698 833 HOH HOH . 
J 5 HOH A 99 699 787 HOH HOH . 
J 5 HOH A 100 700 786 HOH HOH . 
J 5 HOH A 101 701 819 HOH HOH . 
J 5 HOH A 102 702 726 HOH HOH . 
J 5 HOH A 103 703 757 HOH HOH . 
J 5 HOH A 104 704 780 HOH HOH . 
J 5 HOH A 105 705 832 HOH HOH . 
J 5 HOH A 106 706 835 HOH HOH . 
J 5 HOH A 107 707 758 HOH HOH . 
J 5 HOH A 108 708 826 HOH HOH . 
J 5 HOH A 109 709 787 HOH HOH . 
J 5 HOH A 110 710 817 HOH HOH . 
J 5 HOH A 111 711 783 HOH HOH . 
J 5 HOH A 112 712 801 HOH HOH . 
J 5 HOH A 113 713 841 HOH HOH . 
J 5 HOH A 114 714 824 HOH HOH . 
J 5 HOH A 115 715 821 HOH HOH . 
J 5 HOH A 116 716 715 HOH HOH . 
J 5 HOH A 117 717 785 HOH HOH . 
J 5 HOH A 118 718 747 HOH HOH . 
J 5 HOH A 119 719 795 HOH HOH . 
J 5 HOH A 120 720 770 HOH HOH . 
J 5 HOH A 121 721 773 HOH HOH . 
J 5 HOH A 122 722 818 HOH HOH . 
J 5 HOH A 123 723 773 HOH HOH . 
J 5 HOH A 124 724 800 HOH HOH . 
J 5 HOH A 125 725 837 HOH HOH . 
J 5 HOH A 126 726 794 HOH HOH . 
K 5 HOH B 1 601 736 HOH HOH . 
K 5 HOH B 2 602 702 HOH HOH . 
K 5 HOH B 3 603 763 HOH HOH . 
K 5 HOH B 4 604 718 HOH HOH . 
K 5 HOH B 5 605 805 HOH HOH . 
K 5 HOH B 6 606 715 HOH HOH . 
K 5 HOH B 7 607 770 HOH HOH . 
K 5 HOH B 8 608 759 HOH HOH . 
K 5 HOH B 9 609 828 HOH HOH . 
K 5 HOH B 10 610 768 HOH HOH . 
K 5 HOH B 11 611 821 HOH HOH . 
K 5 HOH B 12 612 749 HOH HOH . 
K 5 HOH B 13 613 703 HOH HOH . 
K 5 HOH B 14 614 709 HOH HOH . 
K 5 HOH B 15 615 721 HOH HOH . 
K 5 HOH B 16 616 717 HOH HOH . 
K 5 HOH B 17 617 810 HOH HOH . 
K 5 HOH B 18 618 746 HOH HOH . 
K 5 HOH B 19 619 708 HOH HOH . 
K 5 HOH B 20 620 704 HOH HOH . 
K 5 HOH B 21 621 701 HOH HOH . 
K 5 HOH B 22 622 720 HOH HOH . 
K 5 HOH B 23 623 711 HOH HOH . 
K 5 HOH B 24 624 757 HOH HOH . 
K 5 HOH B 25 625 718 HOH HOH . 
K 5 HOH B 26 626 778 HOH HOH . 
K 5 HOH B 27 627 728 HOH HOH . 
K 5 HOH B 28 628 786 HOH HOH . 
K 5 HOH B 29 629 765 HOH HOH . 
K 5 HOH B 30 630 744 HOH HOH . 
K 5 HOH B 31 631 777 HOH HOH . 
K 5 HOH B 32 632 727 HOH HOH . 
K 5 HOH B 33 633 779 HOH HOH . 
K 5 HOH B 34 634 756 HOH HOH . 
K 5 HOH B 35 635 831 HOH HOH . 
K 5 HOH B 36 636 776 HOH HOH . 
K 5 HOH B 37 637 730 HOH HOH . 
K 5 HOH B 38 638 737 HOH HOH . 
K 5 HOH B 39 639 807 HOH HOH . 
K 5 HOH B 40 640 745 HOH HOH . 
K 5 HOH B 41 641 769 HOH HOH . 
K 5 HOH B 42 642 798 HOH HOH . 
K 5 HOH B 43 643 725 HOH HOH . 
K 5 HOH B 44 644 816 HOH HOH . 
K 5 HOH B 45 645 812 HOH HOH . 
K 5 HOH B 46 646 756 HOH HOH . 
K 5 HOH B 47 647 833 HOH HOH . 
K 5 HOH B 48 648 754 HOH HOH . 
K 5 HOH B 49 649 830 HOH HOH . 
K 5 HOH B 50 650 764 HOH HOH . 
K 5 HOH B 51 651 826 HOH HOH . 
K 5 HOH B 52 652 777 HOH HOH . 
K 5 HOH B 53 653 827 HOH HOH . 
K 5 HOH B 54 654 831 HOH HOH . 
K 5 HOH B 55 655 731 HOH HOH . 
K 5 HOH B 56 656 720 HOH HOH . 
K 5 HOH B 57 657 776 HOH HOH . 
K 5 HOH B 58 658 701 HOH HOH . 
K 5 HOH B 59 659 784 HOH HOH . 
K 5 HOH B 60 660 717 HOH HOH . 
K 5 HOH B 61 661 799 HOH HOH . 
K 5 HOH B 62 662 815 HOH HOH . 
K 5 HOH B 63 663 713 HOH HOH . 
K 5 HOH B 64 664 781 HOH HOH . 
K 5 HOH B 65 665 798 HOH HOH . 
K 5 HOH B 66 666 834 HOH HOH . 
K 5 HOH B 67 667 809 HOH HOH . 
K 5 HOH B 68 668 830 HOH HOH . 
K 5 HOH B 69 669 755 HOH HOH . 
K 5 HOH B 70 670 748 HOH HOH . 
K 5 HOH B 71 671 769 HOH HOH . 
K 5 HOH B 72 672 832 HOH HOH . 
K 5 HOH B 73 673 805 HOH HOH . 
K 5 HOH B 74 674 812 HOH HOH . 
K 5 HOH B 75 675 782 HOH HOH . 
K 5 HOH B 76 676 789 HOH HOH . 
K 5 HOH B 77 677 791 HOH HOH . 
K 5 HOH B 78 678 839 HOH HOH . 
K 5 HOH B 79 679 730 HOH HOH . 
K 5 HOH B 80 680 814 HOH HOH . 
K 5 HOH B 81 681 813 HOH HOH . 
K 5 HOH B 82 682 797 HOH HOH . 
K 5 HOH B 83 683 742 HOH HOH . 
K 5 HOH B 84 684 808 HOH HOH . 
K 5 HOH B 85 685 834 HOH HOH . 
K 5 HOH B 86 686 796 HOH HOH . 
K 5 HOH B 87 687 792 HOH HOH . 
K 5 HOH B 88 688 790 HOH HOH . 
K 5 HOH B 89 689 804 HOH HOH . 
K 5 HOH B 90 690 793 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -2.334 -18.333 0.426 1 43.73 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . E 4 -1.708 -17.729 1.503 1 37.59 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . E 4 -1.236 -19.031 -0.345 1 36.48 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . E 4 -1.28 -20.376 0.068 1 27.86 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . E 4 -1.465 -18.757 -1.826 1 37.45 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . E 4 -1.202 -19.826 -2.705 1 21.65 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#