data_5N5F
#
_model_server_result.job_id            73bpYshOI_6tIpy1R4rD9Q 
_model_server_result.datetime_utc      '2025-08-31 11:40:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":101}' 
#
_entry.id    5N5F 
#
_exptl.entry_id    5N5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.94 
_cell.angle_gamma         90 
_cell.entry_id            5N5F 
_cell.length_a            91.629 
_cell.length_b            92.652 
_cell.length_c            119.291 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 85 A THR 85 1_555 K NA NA . E NA 101 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc2 L O HOH . A HOH 112 4_547 K NA NA . E NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc3 E OG1 THR 85 E THR 85 1_555 K NA NA . E NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc4 K NA NA . E NA 101 1_555 P O HOH . E HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc5 K NA NA . E NA 101 1_555 P O HOH . E HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5N5F 
_atom_sites.fract_transf_matrix[1][1]    0.010914 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003324 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010793 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008763 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 NA E 1 101 1 NA NA . 
L 3 HOH A 1 101 13 HOH HOH . 
L 3 HOH A 2 102 156 HOH HOH . 
L 3 HOH A 3 103 83 HOH HOH . 
L 3 HOH A 4 104 48 HOH HOH . 
L 3 HOH A 5 105 98 HOH HOH . 
L 3 HOH A 6 106 167 HOH HOH . 
L 3 HOH A 7 107 8 HOH HOH . 
L 3 HOH A 8 108 12 HOH HOH . 
L 3 HOH A 9 109 4 HOH HOH . 
L 3 HOH A 10 110 32 HOH HOH . 
L 3 HOH A 11 111 60 HOH HOH . 
L 3 HOH A 12 112 105 HOH HOH . 
L 3 HOH A 13 113 128 HOH HOH . 
L 3 HOH A 14 114 131 HOH HOH . 
L 3 HOH A 15 115 51 HOH HOH . 
L 3 HOH A 16 116 103 HOH HOH . 
L 3 HOH A 17 117 6 HOH HOH . 
L 3 HOH A 18 118 168 HOH HOH . 
L 3 HOH A 19 119 121 HOH HOH . 
L 3 HOH A 20 120 161 HOH HOH . 
M 3 HOH B 1 101 164 HOH HOH . 
M 3 HOH B 2 102 81 HOH HOH . 
M 3 HOH B 3 103 101 HOH HOH . 
M 3 HOH B 4 104 41 HOH HOH . 
M 3 HOH B 5 105 26 HOH HOH . 
M 3 HOH B 6 106 29 HOH HOH . 
M 3 HOH B 7 107 143 HOH HOH . 
M 3 HOH B 8 108 141 HOH HOH . 
M 3 HOH B 9 109 82 HOH HOH . 
M 3 HOH B 10 110 120 HOH HOH . 
M 3 HOH B 11 111 165 HOH HOH . 
M 3 HOH B 12 112 63 HOH HOH . 
M 3 HOH B 13 113 151 HOH HOH . 
M 3 HOH B 14 114 39 HOH HOH . 
M 3 HOH B 15 115 152 HOH HOH . 
M 3 HOH B 16 116 150 HOH HOH . 
N 3 HOH C 1 101 115 HOH HOH . 
N 3 HOH C 2 102 130 HOH HOH . 
N 3 HOH C 3 103 114 HOH HOH . 
N 3 HOH C 4 104 111 HOH HOH . 
N 3 HOH C 5 105 68 HOH HOH . 
O 3 HOH D 1 101 104 HOH HOH . 
O 3 HOH D 2 102 126 HOH HOH . 
O 3 HOH D 3 103 166 HOH HOH . 
O 3 HOH D 4 104 22 HOH HOH . 
O 3 HOH D 5 105 118 HOH HOH . 
O 3 HOH D 6 106 138 HOH HOH . 
P 3 HOH E 1 201 163 HOH HOH . 
P 3 HOH E 2 202 125 HOH HOH . 
P 3 HOH E 3 203 66 HOH HOH . 
P 3 HOH E 4 204 153 HOH HOH . 
P 3 HOH E 5 205 91 HOH HOH . 
P 3 HOH E 6 206 57 HOH HOH . 
P 3 HOH E 7 207 54 HOH HOH . 
P 3 HOH E 8 208 88 HOH HOH . 
P 3 HOH E 9 209 20 HOH HOH . 
P 3 HOH E 10 210 46 HOH HOH . 
P 3 HOH E 11 211 73 HOH HOH . 
P 3 HOH E 12 212 109 HOH HOH . 
P 3 HOH E 13 213 16 HOH HOH . 
P 3 HOH E 14 214 113 HOH HOH . 
P 3 HOH E 15 215 1 HOH HOH . 
P 3 HOH E 16 216 37 HOH HOH . 
P 3 HOH E 17 217 85 HOH HOH . 
P 3 HOH E 18 218 124 HOH HOH . 
P 3 HOH E 19 219 158 HOH HOH . 
P 3 HOH E 20 220 65 HOH HOH . 
P 3 HOH E 21 221 79 HOH HOH . 
P 3 HOH E 22 222 97 HOH HOH . 
P 3 HOH E 23 223 38 HOH HOH . 
P 3 HOH E 24 224 102 HOH HOH . 
P 3 HOH E 25 225 139 HOH HOH . 
P 3 HOH E 26 226 149 HOH HOH . 
P 3 HOH E 27 227 62 HOH HOH . 
P 3 HOH E 28 228 122 HOH HOH . 
Q 3 HOH F 1 101 72 HOH HOH . 
Q 3 HOH F 2 102 162 HOH HOH . 
Q 3 HOH F 3 103 117 HOH HOH . 
Q 3 HOH F 4 104 119 HOH HOH . 
Q 3 HOH F 5 105 49 HOH HOH . 
Q 3 HOH F 6 106 18 HOH HOH . 
Q 3 HOH F 7 107 2 HOH HOH . 
Q 3 HOH F 8 108 110 HOH HOH . 
Q 3 HOH F 9 109 34 HOH HOH . 
Q 3 HOH F 10 110 89 HOH HOH . 
Q 3 HOH F 11 111 14 HOH HOH . 
Q 3 HOH F 12 112 58 HOH HOH . 
Q 3 HOH F 13 113 59 HOH HOH . 
Q 3 HOH F 14 114 47 HOH HOH . 
Q 3 HOH F 15 115 33 HOH HOH . 
Q 3 HOH F 16 116 107 HOH HOH . 
Q 3 HOH F 17 117 99 HOH HOH . 
Q 3 HOH F 18 118 67 HOH HOH . 
Q 3 HOH F 19 119 55 HOH HOH . 
Q 3 HOH F 20 120 155 HOH HOH . 
Q 3 HOH F 21 121 36 HOH HOH . 
Q 3 HOH F 22 122 44 HOH HOH . 
Q 3 HOH F 23 123 106 HOH HOH . 
Q 3 HOH F 24 124 77 HOH HOH . 
Q 3 HOH F 25 125 43 HOH HOH . 
R 3 HOH G 1 101 50 HOH HOH . 
R 3 HOH G 2 102 87 HOH HOH . 
R 3 HOH G 3 103 71 HOH HOH . 
R 3 HOH G 4 104 30 HOH HOH . 
R 3 HOH G 5 105 80 HOH HOH . 
R 3 HOH G 6 106 19 HOH HOH . 
R 3 HOH G 7 107 123 HOH HOH . 
R 3 HOH G 8 108 27 HOH HOH . 
R 3 HOH G 9 109 70 HOH HOH . 
R 3 HOH G 10 110 147 HOH HOH . 
R 3 HOH G 11 111 133 HOH HOH . 
R 3 HOH G 12 112 21 HOH HOH . 
R 3 HOH G 13 113 127 HOH HOH . 
R 3 HOH G 14 114 160 HOH HOH . 
R 3 HOH G 15 115 135 HOH HOH . 
R 3 HOH G 16 116 95 HOH HOH . 
R 3 HOH G 17 117 134 HOH HOH . 
S 3 HOH H 1 101 148 HOH HOH . 
S 3 HOH H 2 102 75 HOH HOH . 
S 3 HOH H 3 103 15 HOH HOH . 
S 3 HOH H 4 104 84 HOH HOH . 
S 3 HOH H 5 105 5 HOH HOH . 
S 3 HOH H 6 106 137 HOH HOH . 
S 3 HOH H 7 107 74 HOH HOH . 
S 3 HOH H 8 108 96 HOH HOH . 
S 3 HOH H 9 109 28 HOH HOH . 
S 3 HOH H 10 110 146 HOH HOH . 
S 3 HOH H 11 111 100 HOH HOH . 
S 3 HOH H 12 112 157 HOH HOH . 
S 3 HOH H 13 113 159 HOH HOH . 
S 3 HOH H 14 114 53 HOH HOH . 
S 3 HOH H 15 115 3 HOH HOH . 
S 3 HOH H 16 116 45 HOH HOH . 
S 3 HOH H 17 117 145 HOH HOH . 
T 3 HOH I 1 101 23 HOH HOH . 
T 3 HOH I 2 102 94 HOH HOH . 
T 3 HOH I 3 103 93 HOH HOH . 
T 3 HOH I 4 104 52 HOH HOH . 
T 3 HOH I 5 105 154 HOH HOH . 
T 3 HOH I 6 106 144 HOH HOH . 
T 3 HOH I 7 107 56 HOH HOH . 
T 3 HOH I 8 108 7 HOH HOH . 
T 3 HOH I 9 109 132 HOH HOH . 
T 3 HOH I 10 110 76 HOH HOH . 
T 3 HOH I 11 111 112 HOH HOH . 
T 3 HOH I 12 112 35 HOH HOH . 
T 3 HOH I 13 113 90 HOH HOH . 
T 3 HOH I 14 114 108 HOH HOH . 
T 3 HOH I 15 115 10 HOH HOH . 
T 3 HOH I 16 116 69 HOH HOH . 
U 3 HOH J 1 101 24 HOH HOH . 
U 3 HOH J 2 102 64 HOH HOH . 
U 3 HOH J 3 103 78 HOH HOH . 
U 3 HOH J 4 104 92 HOH HOH . 
U 3 HOH J 5 105 9 HOH HOH . 
U 3 HOH J 6 106 40 HOH HOH . 
U 3 HOH J 7 107 17 HOH HOH . 
U 3 HOH J 8 108 86 HOH HOH . 
U 3 HOH J 9 109 25 HOH HOH . 
U 3 HOH J 10 110 61 HOH HOH . 
U 3 HOH J 11 111 11 HOH HOH . 
U 3 HOH J 12 112 142 HOH HOH . 
U 3 HOH J 13 113 129 HOH HOH . 
U 3 HOH J 14 114 31 HOH HOH . 
U 3 HOH J 15 115 116 HOH HOH . 
U 3 HOH J 16 116 42 HOH HOH . 
U 3 HOH J 17 117 136 HOH HOH . 
U 3 HOH J 18 118 140 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -12.365 
_atom_site.Cartn_y               -33.783 
_atom_site.Cartn_z               113.746 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              273 
_model_server_stats.parse_time_ms           592 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           800 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#