data_5N5J # _model_server_result.job_id Ep62pccPMKcvHdOcWA0pGg _model_server_result.datetime_utc '2024-11-27 16:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5N5J # _exptl.entry_id 5N5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.55 _cell.angle_gamma 90 _cell.entry_id 5N5J _cell.length_a 50.926 _cell.length_b 60.47 _cell.length_c 53.844 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 19 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A OD2 ASP 19 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A O ASP 53 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 A NE2 HIS 63 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 A OD2 ASP 65 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 A OD1 ASP 70 A ASP 175 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A O GLY 71 A GLY 176 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 A O GLY 73 A GLY 178 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 A O ILE 75 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 A NE2 HIS 78 A HIS 183 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc11 A O GLY 85 A GLY 190 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 A O GLY 87 A GLY 192 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 A OD1 ASP 89 A ASP 194 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc14 A ND1 HIS 91 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc15 A OD2 ASP 93 A ASP 198 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc16 A O GLU 94 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc17 A OE2 GLU 94 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc18 A O GLU 96 A GLU 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc19 A OE2 GLU 96 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc20 A NE2 HIS 113 A HIS 218 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc21 A NE2 HIS 117 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc22 A NE2 HIS 123 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 G O2 HAE . A HAE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc24 B ZN ZN . A ZN 301 1_555 G O HAE . A HAE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc25 D CA CA . A CA 303 1_555 I O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc26 D CA CA . A CA 303 1_555 I O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc27 E CA CA . A CA 304 1_555 I O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc28 E CA CA . A CA 304 1_555 I O HOH . A HOH 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N5J _atom_sites.fract_transf_matrix[1][1] 0.019636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008969 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 264 ZN ZN . C 2 ZN A 1 302 265 ZN ZN . D 3 CA A 1 303 266 CA CA . E 3 CA A 1 304 267 CA CA . F 3 CA A 1 305 268 CA CA . G 4 HAE A 1 306 900 HAE HAE . H 5 8NT A 1 307 901 8NT GPE . I 6 HOH A 1 401 155 HOH HOH . I 6 HOH A 2 402 7 HOH HOH . I 6 HOH A 3 403 99 HOH HOH . I 6 HOH A 4 404 102 HOH HOH . I 6 HOH A 5 405 67 HOH HOH . I 6 HOH A 6 406 35 HOH HOH . I 6 HOH A 7 407 33 HOH HOH . I 6 HOH A 8 408 104 HOH HOH . I 6 HOH A 9 409 26 HOH HOH . I 6 HOH A 10 410 111 HOH HOH . I 6 HOH A 11 411 64 HOH HOH . I 6 HOH A 12 412 65 HOH HOH . I 6 HOH A 13 413 128 HOH HOH . I 6 HOH A 14 414 119 HOH HOH . I 6 HOH A 15 415 20 HOH HOH . I 6 HOH A 16 416 62 HOH HOH . I 6 HOH A 17 417 75 HOH HOH . I 6 HOH A 18 418 122 HOH HOH . I 6 HOH A 19 419 21 HOH HOH . I 6 HOH A 20 420 55 HOH HOH . I 6 HOH A 21 421 16 HOH HOH . I 6 HOH A 22 422 12 HOH HOH . I 6 HOH A 23 423 98 HOH HOH . I 6 HOH A 24 424 51 HOH HOH . I 6 HOH A 25 425 22 HOH HOH . I 6 HOH A 26 426 117 HOH HOH . I 6 HOH A 27 427 13 HOH HOH . I 6 HOH A 28 428 49 HOH HOH . I 6 HOH A 29 429 68 HOH HOH . I 6 HOH A 30 430 139 HOH HOH . I 6 HOH A 31 431 5 HOH HOH . I 6 HOH A 32 432 11 HOH HOH . I 6 HOH A 33 433 105 HOH HOH . I 6 HOH A 34 434 84 HOH HOH . I 6 HOH A 35 435 18 HOH HOH . I 6 HOH A 36 436 79 HOH HOH . I 6 HOH A 37 437 145 HOH HOH . I 6 HOH A 38 438 147 HOH HOH . I 6 HOH A 39 439 108 HOH HOH . I 6 HOH A 40 440 10 HOH HOH . I 6 HOH A 41 441 138 HOH HOH . I 6 HOH A 42 442 54 HOH HOH . I 6 HOH A 43 443 27 HOH HOH . I 6 HOH A 44 444 58 HOH HOH . I 6 HOH A 45 445 85 HOH HOH . I 6 HOH A 46 446 124 HOH HOH . I 6 HOH A 47 447 15 HOH HOH . I 6 HOH A 48 448 41 HOH HOH . I 6 HOH A 49 449 150 HOH HOH . I 6 HOH A 50 450 8 HOH HOH . I 6 HOH A 51 451 101 HOH HOH . I 6 HOH A 52 452 81 HOH HOH . I 6 HOH A 53 453 59 HOH HOH . I 6 HOH A 54 454 56 HOH HOH . I 6 HOH A 55 455 74 HOH HOH . I 6 HOH A 56 456 36 HOH HOH . I 6 HOH A 57 457 120 HOH HOH . I 6 HOH A 58 458 140 HOH HOH . I 6 HOH A 59 459 42 HOH HOH . I 6 HOH A 60 460 34 HOH HOH . I 6 HOH A 61 461 52 HOH HOH . I 6 HOH A 62 462 86 HOH HOH . I 6 HOH A 63 463 38 HOH HOH . I 6 HOH A 64 464 31 HOH HOH . I 6 HOH A 65 465 46 HOH HOH . I 6 HOH A 66 466 146 HOH HOH . I 6 HOH A 67 467 24 HOH HOH . I 6 HOH A 68 468 148 HOH HOH . I 6 HOH A 69 469 70 HOH HOH . I 6 HOH A 70 470 71 HOH HOH . I 6 HOH A 71 471 131 HOH HOH . I 6 HOH A 72 472 28 HOH HOH . I 6 HOH A 73 473 3 HOH HOH . I 6 HOH A 74 474 118 HOH HOH . I 6 HOH A 75 475 47 HOH HOH . I 6 HOH A 76 476 9 HOH HOH . I 6 HOH A 77 477 88 HOH HOH . I 6 HOH A 78 478 100 HOH HOH . I 6 HOH A 79 479 63 HOH HOH . I 6 HOH A 80 480 43 HOH HOH . I 6 HOH A 81 481 39 HOH HOH . I 6 HOH A 82 482 130 HOH HOH . I 6 HOH A 83 483 106 HOH HOH . I 6 HOH A 84 484 25 HOH HOH . I 6 HOH A 85 485 112 HOH HOH . I 6 HOH A 86 486 125 HOH HOH . I 6 HOH A 87 487 53 HOH HOH . I 6 HOH A 88 488 107 HOH HOH . I 6 HOH A 89 489 6 HOH HOH . I 6 HOH A 90 490 2 HOH HOH . I 6 HOH A 91 491 83 HOH HOH . I 6 HOH A 92 492 82 HOH HOH . I 6 HOH A 93 493 50 HOH HOH . I 6 HOH A 94 494 17 HOH HOH . I 6 HOH A 95 495 40 HOH HOH . I 6 HOH A 96 496 4 HOH HOH . I 6 HOH A 97 497 154 HOH HOH . I 6 HOH A 98 498 23 HOH HOH . I 6 HOH A 99 499 66 HOH HOH . I 6 HOH A 100 500 132 HOH HOH . I 6 HOH A 101 501 29 HOH HOH . I 6 HOH A 102 502 96 HOH HOH . I 6 HOH A 103 503 158 HOH HOH . I 6 HOH A 104 504 73 HOH HOH . I 6 HOH A 105 505 134 HOH HOH . I 6 HOH A 106 506 137 HOH HOH . I 6 HOH A 107 507 121 HOH HOH . I 6 HOH A 108 508 80 HOH HOH . I 6 HOH A 109 509 44 HOH HOH . I 6 HOH A 110 510 129 HOH HOH . I 6 HOH A 111 511 78 HOH HOH . I 6 HOH A 112 512 91 HOH HOH . I 6 HOH A 113 513 87 HOH HOH . I 6 HOH A 114 514 60 HOH HOH . I 6 HOH A 115 515 94 HOH HOH . I 6 HOH A 116 516 114 HOH HOH . I 6 HOH A 117 517 153 HOH HOH . I 6 HOH A 118 518 133 HOH HOH . I 6 HOH A 119 519 144 HOH HOH . I 6 HOH A 120 520 72 HOH HOH . I 6 HOH A 121 521 136 HOH HOH . I 6 HOH A 122 522 151 HOH HOH . I 6 HOH A 123 523 57 HOH HOH . I 6 HOH A 124 524 77 HOH HOH . I 6 HOH A 125 525 149 HOH HOH . I 6 HOH A 126 526 103 HOH HOH . I 6 HOH A 127 527 126 HOH HOH . I 6 HOH A 128 528 69 HOH HOH . I 6 HOH A 129 529 113 HOH HOH . I 6 HOH A 130 530 92 HOH HOH . I 6 HOH A 131 531 141 HOH HOH . I 6 HOH A 132 532 142 HOH HOH . I 6 HOH A 133 533 61 HOH HOH . I 6 HOH A 134 534 76 HOH HOH . I 6 HOH A 135 535 143 HOH HOH . I 6 HOH A 136 536 30 HOH HOH . I 6 HOH A 137 537 123 HOH HOH . I 6 HOH A 138 538 90 HOH HOH . I 6 HOH A 139 539 156 HOH HOH . I 6 HOH A 140 540 1 HOH HOH . I 6 HOH A 141 541 157 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.096 _atom_site.Cartn_y -9.906 _atom_site.Cartn_z 9.415 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #