data_5N5K # _model_server_result.job_id 741Aawwk3T2FDol7MDG3-w _model_server_result.datetime_utc '2024-11-24 00:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5N5K # _exptl.entry_id 5N5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.61 _cell.angle_gamma 90 _cell.entry_id 5N5K _cell.length_a 50.79 _cell.length_b 60.17 _cell.length_c 53.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 17 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc2 A OD2 ASP 17 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A O ASP 51 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 A NE2 HIS 61 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc5 A OD2 ASP 63 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc6 A OD1 ASP 68 A ASP 175 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc7 A O GLY 69 A GLY 176 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 A O GLY 71 A GLY 178 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 A O ILE 73 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc10 A NE2 HIS 76 A HIS 183 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc11 A O GLY 83 A GLY 190 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 A O GLY 85 A GLY 192 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 A OD1 ASP 87 A ASP 194 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc14 A ND1 HIS 89 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc15 A OD2 ASP 91 A ASP 198 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc16 A O GLU 92 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc17 A OE1 GLU 92 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc18 A O GLU 94 A GLU 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc19 A OE1 GLU 94 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc20 A NE2 HIS 111 A HIS 218 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc21 A NE2 HIS 115 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc22 A NE2 HIS 121 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 G O2 HAE . A HAE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc24 B ZN ZN . A ZN 301 1_555 G O HAE . A HAE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc25 D CA CA . A CA 303 1_555 I O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc26 D CA CA . A CA 303 1_555 I O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc27 E CA CA . A CA 304 1_555 I O HOH . A HOH 503 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc28 E CA CA . A CA 304 1_555 I O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N5K _atom_sites.fract_transf_matrix[1][1] 0.019689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 264 ZN ZN . C 2 ZN A 1 302 265 ZN ZN . D 3 CA A 1 303 266 CA CA . E 3 CA A 1 304 267 CA CA . F 3 CA A 1 305 268 CA CA . G 4 HAE A 1 306 900 HAE HAE . H 5 8NW A 1 307 901 8NW GPE . I 6 HOH A 1 401 43 HOH HOH . I 6 HOH A 2 402 29 HOH HOH . I 6 HOH A 3 403 121 HOH HOH . I 6 HOH A 4 404 34 HOH HOH . I 6 HOH A 5 405 132 HOH HOH . I 6 HOH A 6 406 74 HOH HOH . I 6 HOH A 7 407 144 HOH HOH . I 6 HOH A 8 408 63 HOH HOH . I 6 HOH A 9 409 47 HOH HOH . I 6 HOH A 10 410 137 HOH HOH . I 6 HOH A 11 411 79 HOH HOH . I 6 HOH A 12 412 126 HOH HOH . I 6 HOH A 13 413 60 HOH HOH . I 6 HOH A 14 414 46 HOH HOH . I 6 HOH A 15 415 169 HOH HOH . I 6 HOH A 16 416 143 HOH HOH . I 6 HOH A 17 417 26 HOH HOH . I 6 HOH A 18 418 147 HOH HOH . I 6 HOH A 19 419 115 HOH HOH . I 6 HOH A 20 420 131 HOH HOH . I 6 HOH A 21 421 171 HOH HOH . I 6 HOH A 22 422 48 HOH HOH . I 6 HOH A 23 423 164 HOH HOH . I 6 HOH A 24 424 106 HOH HOH . I 6 HOH A 25 425 96 HOH HOH . I 6 HOH A 26 426 45 HOH HOH . I 6 HOH A 27 427 84 HOH HOH . I 6 HOH A 28 428 154 HOH HOH . I 6 HOH A 29 429 120 HOH HOH . I 6 HOH A 30 430 19 HOH HOH . I 6 HOH A 31 431 110 HOH HOH . I 6 HOH A 32 432 1 HOH HOH . I 6 HOH A 33 433 162 HOH HOH . I 6 HOH A 34 434 22 HOH HOH . I 6 HOH A 35 435 62 HOH HOH . I 6 HOH A 36 436 54 HOH HOH . I 6 HOH A 37 437 89 HOH HOH . I 6 HOH A 38 438 123 HOH HOH . I 6 HOH A 39 439 4 HOH HOH . I 6 HOH A 40 440 6 HOH HOH . I 6 HOH A 41 441 82 HOH HOH . I 6 HOH A 42 442 36 HOH HOH . I 6 HOH A 43 443 158 HOH HOH . I 6 HOH A 44 444 10 HOH HOH . I 6 HOH A 45 445 44 HOH HOH . I 6 HOH A 46 446 108 HOH HOH . I 6 HOH A 47 447 129 HOH HOH . I 6 HOH A 48 448 38 HOH HOH . I 6 HOH A 49 449 13 HOH HOH . I 6 HOH A 50 450 156 HOH HOH . I 6 HOH A 51 451 20 HOH HOH . I 6 HOH A 52 452 56 HOH HOH . I 6 HOH A 53 453 78 HOH HOH . I 6 HOH A 54 454 33 HOH HOH . I 6 HOH A 55 455 17 HOH HOH . I 6 HOH A 56 456 94 HOH HOH . I 6 HOH A 57 457 50 HOH HOH . I 6 HOH A 58 458 24 HOH HOH . I 6 HOH A 59 459 97 HOH HOH . I 6 HOH A 60 460 9 HOH HOH . I 6 HOH A 61 461 69 HOH HOH . I 6 HOH A 62 462 83 HOH HOH . I 6 HOH A 63 463 37 HOH HOH . I 6 HOH A 64 464 58 HOH HOH . I 6 HOH A 65 465 75 HOH HOH . I 6 HOH A 66 466 30 HOH HOH . I 6 HOH A 67 467 72 HOH HOH . I 6 HOH A 68 468 166 HOH HOH . I 6 HOH A 69 469 64 HOH HOH . I 6 HOH A 70 470 86 HOH HOH . I 6 HOH A 71 471 104 HOH HOH . I 6 HOH A 72 472 142 HOH HOH . I 6 HOH A 73 473 124 HOH HOH . I 6 HOH A 74 474 98 HOH HOH . I 6 HOH A 75 475 23 HOH HOH . I 6 HOH A 76 476 146 HOH HOH . I 6 HOH A 77 477 40 HOH HOH . I 6 HOH A 78 478 88 HOH HOH . I 6 HOH A 79 479 41 HOH HOH . I 6 HOH A 80 480 145 HOH HOH . I 6 HOH A 81 481 39 HOH HOH . I 6 HOH A 82 482 35 HOH HOH . I 6 HOH A 83 483 91 HOH HOH . I 6 HOH A 84 484 67 HOH HOH . I 6 HOH A 85 485 52 HOH HOH . I 6 HOH A 86 486 92 HOH HOH . I 6 HOH A 87 487 76 HOH HOH . I 6 HOH A 88 488 99 HOH HOH . I 6 HOH A 89 489 27 HOH HOH . I 6 HOH A 90 490 49 HOH HOH . I 6 HOH A 91 491 8 HOH HOH . I 6 HOH A 92 492 14 HOH HOH . I 6 HOH A 93 493 93 HOH HOH . I 6 HOH A 94 494 130 HOH HOH . I 6 HOH A 95 495 157 HOH HOH . I 6 HOH A 96 496 32 HOH HOH . I 6 HOH A 97 497 16 HOH HOH . I 6 HOH A 98 498 90 HOH HOH . I 6 HOH A 99 499 3 HOH HOH . I 6 HOH A 100 500 73 HOH HOH . I 6 HOH A 101 501 85 HOH HOH . I 6 HOH A 102 502 21 HOH HOH . I 6 HOH A 103 503 12 HOH HOH . I 6 HOH A 104 504 42 HOH HOH . I 6 HOH A 105 505 31 HOH HOH . I 6 HOH A 106 506 28 HOH HOH . I 6 HOH A 107 507 5 HOH HOH . I 6 HOH A 108 508 100 HOH HOH . I 6 HOH A 109 509 15 HOH HOH . I 6 HOH A 110 510 66 HOH HOH . I 6 HOH A 111 511 153 HOH HOH . I 6 HOH A 112 512 53 HOH HOH . I 6 HOH A 113 513 101 HOH HOH . I 6 HOH A 114 514 2 HOH HOH . I 6 HOH A 115 515 7 HOH HOH . I 6 HOH A 116 516 116 HOH HOH . I 6 HOH A 117 517 80 HOH HOH . I 6 HOH A 118 518 161 HOH HOH . I 6 HOH A 119 519 172 HOH HOH . I 6 HOH A 120 520 59 HOH HOH . I 6 HOH A 121 521 11 HOH HOH . I 6 HOH A 122 522 18 HOH HOH . I 6 HOH A 123 523 133 HOH HOH . I 6 HOH A 124 524 51 HOH HOH . I 6 HOH A 125 525 87 HOH HOH . I 6 HOH A 126 526 117 HOH HOH . I 6 HOH A 127 527 118 HOH HOH . I 6 HOH A 128 528 95 HOH HOH . I 6 HOH A 129 529 55 HOH HOH . I 6 HOH A 130 530 102 HOH HOH . I 6 HOH A 131 531 57 HOH HOH . I 6 HOH A 132 532 25 HOH HOH . I 6 HOH A 133 533 151 HOH HOH . I 6 HOH A 134 534 168 HOH HOH . I 6 HOH A 135 535 65 HOH HOH . I 6 HOH A 136 536 81 HOH HOH . I 6 HOH A 137 537 136 HOH HOH . I 6 HOH A 138 538 148 HOH HOH . I 6 HOH A 139 539 68 HOH HOH . I 6 HOH A 140 540 141 HOH HOH . I 6 HOH A 141 541 107 HOH HOH . I 6 HOH A 142 542 160 HOH HOH . I 6 HOH A 143 543 167 HOH HOH . I 6 HOH A 144 544 134 HOH HOH . I 6 HOH A 145 545 125 HOH HOH . I 6 HOH A 146 546 155 HOH HOH . I 6 HOH A 147 547 109 HOH HOH . I 6 HOH A 148 548 149 HOH HOH . I 6 HOH A 149 549 138 HOH HOH . I 6 HOH A 150 550 113 HOH HOH . I 6 HOH A 151 551 152 HOH HOH . I 6 HOH A 152 552 70 HOH HOH . I 6 HOH A 153 553 150 HOH HOH . I 6 HOH A 154 554 122 HOH HOH . I 6 HOH A 155 555 105 HOH HOH . I 6 HOH A 156 556 127 HOH HOH . I 6 HOH A 157 557 103 HOH HOH . I 6 HOH A 158 558 135 HOH HOH . I 6 HOH A 159 559 170 HOH HOH . I 6 HOH A 160 560 163 HOH HOH . I 6 HOH A 161 561 61 HOH HOH . I 6 HOH A 162 562 71 HOH HOH . I 6 HOH A 163 563 119 HOH HOH . I 6 HOH A 164 564 128 HOH HOH . I 6 HOH A 165 565 77 HOH HOH . I 6 HOH A 166 566 111 HOH HOH . I 6 HOH A 167 567 159 HOH HOH . I 6 HOH A 168 568 114 HOH HOH . I 6 HOH A 169 569 165 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.981 _atom_site.Cartn_y -8.044 _atom_site.Cartn_z 18.625 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #