data_5N5L
#
_model_server_result.job_id            '_UYCKInG-zXaK2zfckXheg' 
_model_server_result.datetime_utc      '2025-03-05 19:27:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n5l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5N5L 
#
_exptl.entry_id    5N5L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.053 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-bromanyl-1~{H}-indole-3-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5N5L 
_cell.length_a            97.67 
_cell.length_b            97.67 
_cell.length_c            80.329 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N5L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 260 A SER 260 1_555 A N SEP 261 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C SEP 261 A SEP 261 1_555 A N GLU 262 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C9 H6 Br N O2' 
_chem_comp.formula_weight    240.053 
_chem_comp.id                8NZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-bromanyl-1~{H}-indole-3-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C6 8NZ doub 1 n y 
C7 C8 8NZ sing 2 n y 
C6 C5 8NZ sing 3 n y 
BR C8 8NZ sing 4 n n 
C8 C9 8NZ doub 5 n y 
C5 N 8NZ sing 6 n y 
C5 C10 8NZ doub 7 n y 
N C4 8NZ sing 8 n y 
C9 C10 8NZ sing 9 n y 
C10 C3 8NZ sing 10 n y 
C4 C3 8NZ doub 11 n y 
C3 C2 8NZ sing 12 n n 
C2 O2 8NZ doub 13 n n 
C2 O1 8NZ sing 14 n n 
C4 H1 8NZ sing 15 n n 
C6 H2 8NZ sing 16 n n 
C7 H3 8NZ sing 17 n n 
O1 H4 8NZ sing 18 n n 
C9 H5 8NZ sing 19 n n 
N H6 8NZ sing 20 n n 
#
_atom_sites.entry_id                     5N5L 
_atom_sites.fract_transf_matrix[1][1]    0.010239 
_atom_sites.fract_transf_matrix[1][2]    0.005911 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012449 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 8NZ A 1 401 1 8NZ Z09 . 
D 4 GOL A 1 402 1 GOL GOL . 
E 5 HOH A 1 501 85 HOH HOH . 
E 5 HOH A 2 502 141 HOH HOH . 
E 5 HOH A 3 503 37 HOH HOH . 
E 5 HOH A 4 504 131 HOH HOH . 
E 5 HOH A 5 505 124 HOH HOH . 
E 5 HOH A 6 506 70 HOH HOH . 
E 5 HOH A 7 507 36 HOH HOH . 
E 5 HOH A 8 508 106 HOH HOH . 
E 5 HOH A 9 509 104 HOH HOH . 
E 5 HOH A 10 510 80 HOH HOH . 
E 5 HOH A 11 511 130 HOH HOH . 
E 5 HOH A 12 512 20 HOH HOH . 
E 5 HOH A 13 513 67 HOH HOH . 
E 5 HOH A 14 514 105 HOH HOH . 
E 5 HOH A 15 515 42 HOH HOH . 
E 5 HOH A 16 516 134 HOH HOH . 
E 5 HOH A 17 517 38 HOH HOH . 
E 5 HOH A 18 518 96 HOH HOH . 
E 5 HOH A 19 519 39 HOH HOH . 
E 5 HOH A 20 520 159 HOH HOH . 
E 5 HOH A 21 521 129 HOH HOH . 
E 5 HOH A 22 522 79 HOH HOH . 
E 5 HOH A 23 523 122 HOH HOH . 
E 5 HOH A 24 524 125 HOH HOH . 
E 5 HOH A 25 525 49 HOH HOH . 
E 5 HOH A 26 526 91 HOH HOH . 
E 5 HOH A 27 527 97 HOH HOH . 
E 5 HOH A 28 528 21 HOH HOH . 
E 5 HOH A 29 529 1 HOH HOH . 
E 5 HOH A 30 530 77 HOH HOH . 
E 5 HOH A 31 531 14 HOH HOH . 
E 5 HOH A 32 532 63 HOH HOH . 
E 5 HOH A 33 533 6 HOH HOH . 
E 5 HOH A 34 534 135 HOH HOH . 
E 5 HOH A 35 535 28 HOH HOH . 
E 5 HOH A 36 536 46 HOH HOH . 
E 5 HOH A 37 537 16 HOH HOH . 
E 5 HOH A 38 538 23 HOH HOH . 
E 5 HOH A 39 539 119 HOH HOH . 
E 5 HOH A 40 540 53 HOH HOH . 
E 5 HOH A 41 541 59 HOH HOH . 
E 5 HOH A 42 542 76 HOH HOH . 
E 5 HOH A 43 543 41 HOH HOH . 
E 5 HOH A 44 544 83 HOH HOH . 
E 5 HOH A 45 545 48 HOH HOH . 
E 5 HOH A 46 546 10 HOH HOH . 
E 5 HOH A 47 547 156 HOH HOH . 
E 5 HOH A 48 548 52 HOH HOH . 
E 5 HOH A 49 549 148 HOH HOH . 
E 5 HOH A 50 550 17 HOH HOH . 
E 5 HOH A 51 551 154 HOH HOH . 
E 5 HOH A 52 552 57 HOH HOH . 
E 5 HOH A 53 553 100 HOH HOH . 
E 5 HOH A 54 554 73 HOH HOH . 
E 5 HOH A 55 555 109 HOH HOH . 
E 5 HOH A 56 556 74 HOH HOH . 
E 5 HOH A 57 557 9 HOH HOH . 
E 5 HOH A 58 558 3 HOH HOH . 
E 5 HOH A 59 559 2 HOH HOH . 
E 5 HOH A 60 560 50 HOH HOH . 
E 5 HOH A 61 561 151 HOH HOH . 
E 5 HOH A 62 562 12 HOH HOH . 
E 5 HOH A 63 563 117 HOH HOH . 
E 5 HOH A 64 564 13 HOH HOH . 
E 5 HOH A 65 565 44 HOH HOH . 
E 5 HOH A 66 566 163 HOH HOH . 
E 5 HOH A 67 567 102 HOH HOH . 
E 5 HOH A 68 568 112 HOH HOH . 
E 5 HOH A 69 569 90 HOH HOH . 
E 5 HOH A 70 570 99 HOH HOH . 
E 5 HOH A 71 571 123 HOH HOH . 
E 5 HOH A 72 572 11 HOH HOH . 
E 5 HOH A 73 573 140 HOH HOH . 
E 5 HOH A 74 574 7 HOH HOH . 
E 5 HOH A 75 575 132 HOH HOH . 
E 5 HOH A 76 576 55 HOH HOH . 
E 5 HOH A 77 577 5 HOH HOH . 
E 5 HOH A 78 578 86 HOH HOH . 
E 5 HOH A 79 579 87 HOH HOH . 
E 5 HOH A 80 580 144 HOH HOH . 
E 5 HOH A 81 581 25 HOH HOH . 
E 5 HOH A 82 582 121 HOH HOH . 
E 5 HOH A 83 583 78 HOH HOH . 
E 5 HOH A 84 584 34 HOH HOH . 
E 5 HOH A 85 585 89 HOH HOH . 
E 5 HOH A 86 586 118 HOH HOH . 
E 5 HOH A 87 587 30 HOH HOH . 
E 5 HOH A 88 588 149 HOH HOH . 
E 5 HOH A 89 589 61 HOH HOH . 
E 5 HOH A 90 590 45 HOH HOH . 
E 5 HOH A 91 591 69 HOH HOH . 
E 5 HOH A 92 592 54 HOH HOH . 
E 5 HOH A 93 593 128 HOH HOH . 
E 5 HOH A 94 594 164 HOH HOH . 
E 5 HOH A 95 595 40 HOH HOH . 
E 5 HOH A 96 596 72 HOH HOH . 
E 5 HOH A 97 597 113 HOH HOH . 
E 5 HOH A 98 598 65 HOH HOH . 
E 5 HOH A 99 599 29 HOH HOH . 
E 5 HOH A 100 600 19 HOH HOH . 
E 5 HOH A 101 601 58 HOH HOH . 
E 5 HOH A 102 602 150 HOH HOH . 
E 5 HOH A 103 603 137 HOH HOH . 
E 5 HOH A 104 604 153 HOH HOH . 
E 5 HOH A 105 605 56 HOH HOH . 
E 5 HOH A 106 606 66 HOH HOH . 
E 5 HOH A 107 607 160 HOH HOH . 
E 5 HOH A 108 608 64 HOH HOH . 
E 5 HOH A 109 609 82 HOH HOH . 
E 5 HOH A 110 610 143 HOH HOH . 
E 5 HOH A 111 611 8 HOH HOH . 
E 5 HOH A 112 612 93 HOH HOH . 
E 5 HOH A 113 613 33 HOH HOH . 
E 5 HOH A 114 614 62 HOH HOH . 
E 5 HOH A 115 615 147 HOH HOH . 
E 5 HOH A 116 616 127 HOH HOH . 
E 5 HOH A 117 617 161 HOH HOH . 
E 5 HOH A 118 618 88 HOH HOH . 
E 5 HOH A 119 619 98 HOH HOH . 
E 5 HOH A 120 620 138 HOH HOH . 
E 5 HOH A 121 621 18 HOH HOH . 
E 5 HOH A 122 622 75 HOH HOH . 
E 5 HOH A 123 623 94 HOH HOH . 
E 5 HOH A 124 624 15 HOH HOH . 
E 5 HOH A 125 625 126 HOH HOH . 
E 5 HOH A 126 626 24 HOH HOH . 
E 5 HOH A 127 627 27 HOH HOH . 
E 5 HOH A 128 628 152 HOH HOH . 
E 5 HOH A 129 629 71 HOH HOH . 
E 5 HOH A 130 630 103 HOH HOH . 
E 5 HOH A 131 631 114 HOH HOH . 
E 5 HOH A 132 632 22 HOH HOH . 
E 5 HOH A 133 633 136 HOH HOH . 
E 5 HOH A 134 634 116 HOH HOH . 
E 5 HOH A 135 635 84 HOH HOH . 
E 5 HOH A 136 636 142 HOH HOH . 
E 5 HOH A 137 637 31 HOH HOH . 
E 5 HOH A 138 638 92 HOH HOH . 
E 5 HOH A 139 639 139 HOH HOH . 
E 5 HOH A 140 640 4 HOH HOH . 
E 5 HOH A 141 641 120 HOH HOH . 
E 5 HOH A 142 642 26 HOH HOH . 
E 5 HOH A 143 643 111 HOH HOH . 
E 5 HOH A 144 644 81 HOH HOH . 
E 5 HOH A 145 645 32 HOH HOH . 
E 5 HOH A 146 646 165 HOH HOH . 
E 5 HOH A 147 647 166 HOH HOH . 
E 5 HOH A 148 648 108 HOH HOH . 
E 5 HOH A 149 649 145 HOH HOH . 
E 5 HOH A 150 650 133 HOH HOH . 
E 5 HOH A 151 651 115 HOH HOH . 
E 5 HOH A 152 652 155 HOH HOH . 
E 5 HOH A 153 653 43 HOH HOH . 
E 5 HOH A 154 654 162 HOH HOH . 
E 5 HOH A 155 655 157 HOH HOH . 
E 5 HOH A 156 656 95 HOH HOH . 
E 5 HOH A 157 657 167 HOH HOH . 
E 5 HOH A 158 658 158 HOH HOH . 
E 5 HOH A 159 659 110 HOH HOH . 
E 5 HOH A 160 660 101 HOH HOH . 
E 5 HOH A 161 661 60 HOH HOH . 
E 5 HOH A 162 662 146 HOH HOH . 
F 5 HOH B 1 101 47 HOH HOH . 
F 5 HOH B 2 102 107 HOH HOH . 
F 5 HOH B 3 103 68 HOH HOH . 
F 5 HOH B 4 104 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 8NZ . . . C 3 -186.946 83.651 -0.925 0.86 32.67 ? C2 8NZ 401 A 1 
HETATM 2 C C3 8NZ . . . C 3 -186.708 83.132 -2.31 0.86 34.65 ? C3 8NZ 401 A 1 
HETATM 3 C C4 8NZ . . . C 3 -185.527 82.638 -2.815 0.86 33.67 ? C4 8NZ 401 A 1 
HETATM 4 C C5 8NZ . . . C 3 -186.974 82.583 -4.52 0.86 32.75 ? C5 8NZ 401 A 1 
HETATM 5 C C6 8NZ . . . C 3 -187.6 82.435 -5.752 0.86 29.15 ? C6 8NZ 401 A 1 
HETATM 6 C C7 8NZ . . . C 3 -188.936 82.792 -5.865 0.86 34.62 ? C7 8NZ 401 A 1 
HETATM 7 C C8 8NZ . . . C 3 -189.613 83.28 -4.754 0.86 43.95 ? C8 8NZ 401 A 1 
HETATM 8 O O1 8NZ . . . C 3 -185.898 83.477 -0.125 0.86 42.07 ? O1 8NZ 401 A 1 
HETATM 9 BR BR 8NZ . . . C 3 -191.461 83.703 -4.9 0.86 60.09 ? BR 8NZ 401 A 1 
HETATM 10 C C9 8NZ . . . C 3 -188.998 83.44 -3.529 0.86 38.64 ? C9 8NZ 401 A 1 
HETATM 11 C C10 8NZ . . . C 3 -187.659 83.093 -3.399 0.86 31.32 ? C10 8NZ 401 A 1 
HETATM 12 N N 8NZ . . . C 3 -185.681 82.314 -4.134 0.86 34.91 ? N 8NZ 401 A 1 
HETATM 13 O O2 8NZ . . . C 3 -187.965 84.165 -0.548 0.86 37.52 ? O2 8NZ 401 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#