data_5N5P # _model_server_result.job_id 1cW1McNAsiJUXi2WA3HcLg _model_server_result.datetime_utc '2025-04-01 15:45:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 5N5P # _exptl.entry_id 5N5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.75 _cell.angle_gamma 90 _cell.entry_id 5N5P _cell.length_a 30.093 _cell.length_b 142.898 _cell.length_c 46.588 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 10 B ASP 653 1_555 F CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 B OD1 ASN 12 B ASN 655 1_555 F CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 B OD1 ASP 14 B ASP 657 1_555 F CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc4 B O ASP 16 B ASP 659 1_555 F CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 B OD1 ASP 21 B ASP 664 1_555 F CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc6 B OD2 ASP 21 B ASP 664 1_555 F CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc7 B OD1 ASP 46 B ASP 689 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc8 B O PHE 48 B PHE 691 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 B O ASP 64 B ASP 707 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc10 B OD1 ASP 69 B ASP 712 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc11 B OD2 ASP 69 B ASP 712 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc12 F CA CA . B CA 801 1_555 K O HOH . B HOH 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc13 D OD1 ASP 10 D ASP 653 1_555 H CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc14 D OD1 ASN 12 D ASN 655 1_555 H CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc15 D OD1 ASP 14 D ASP 657 1_555 H CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc16 D O ASP 16 D ASP 659 1_555 H CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc17 D OD1 ASP 21 D ASP 664 1_555 H CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc18 D OD2 ASP 21 D ASP 664 1_555 H CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc19 D OD1 ASP 46 D ASP 689 1_555 I CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc20 D O PHE 48 D PHE 691 1_555 I CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc21 D O ASP 64 D ASP 707 1_555 I CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc22 D OD1 ASP 69 D ASP 712 1_555 I CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc23 D OD2 ASP 69 D ASP 712 1_555 I CA CA . D CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc24 H CA CA . D CA 801 1_555 M O HOH . D HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N5P _atom_sites.fract_transf_matrix[1][1] 0.03323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000435 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CCN A 1 900 900 CCN CCN . F 4 CA B 1 801 801 CA CA . G 4 CA B 1 802 802 CA CA . H 4 CA D 1 801 801 CA CA . I 4 CA D 1 802 802 CA CA . J 5 HOH A 1 1001 19 HOH HOH . J 5 HOH A 2 1002 35 HOH HOH . J 5 HOH A 3 1003 11 HOH HOH . J 5 HOH A 4 1004 2 HOH HOH . J 5 HOH A 5 1005 98 HOH HOH . J 5 HOH A 6 1006 49 HOH HOH . J 5 HOH A 7 1007 45 HOH HOH . J 5 HOH A 8 1008 120 HOH HOH . J 5 HOH A 9 1009 29 HOH HOH . J 5 HOH A 10 1010 142 HOH HOH . J 5 HOH A 11 1011 158 HOH HOH . J 5 HOH A 12 1012 112 HOH HOH . J 5 HOH A 13 1013 67 HOH HOH . J 5 HOH A 14 1014 85 HOH HOH . J 5 HOH A 15 1015 36 HOH HOH . J 5 HOH A 16 1016 69 HOH HOH . J 5 HOH A 17 1017 34 HOH HOH . J 5 HOH A 18 1018 92 HOH HOH . J 5 HOH A 19 1019 118 HOH HOH . J 5 HOH A 20 1020 96 HOH HOH . J 5 HOH A 21 1021 115 HOH HOH . J 5 HOH A 22 1022 22 HOH HOH . J 5 HOH A 23 1023 105 HOH HOH . J 5 HOH A 24 1024 3 HOH HOH . J 5 HOH A 25 1025 196 HOH HOH . J 5 HOH A 26 1026 119 HOH HOH . J 5 HOH A 27 1027 51 HOH HOH . J 5 HOH A 28 1028 144 HOH HOH . J 5 HOH A 29 1029 165 HOH HOH . J 5 HOH A 30 1030 39 HOH HOH . J 5 HOH A 31 1031 114 HOH HOH . J 5 HOH A 32 1032 95 HOH HOH . J 5 HOH A 33 1033 124 HOH HOH . J 5 HOH A 34 1034 80 HOH HOH . J 5 HOH A 35 1035 133 HOH HOH . J 5 HOH A 36 1036 55 HOH HOH . J 5 HOH A 37 1037 64 HOH HOH . J 5 HOH A 38 1038 30 HOH HOH . J 5 HOH A 39 1039 159 HOH HOH . J 5 HOH A 40 1040 7 HOH HOH . J 5 HOH A 41 1041 12 HOH HOH . J 5 HOH A 42 1042 65 HOH HOH . J 5 HOH A 43 1043 168 HOH HOH . J 5 HOH A 44 1044 150 HOH HOH . J 5 HOH A 45 1045 41 HOH HOH . J 5 HOH A 46 1046 122 HOH HOH . J 5 HOH A 47 1047 145 HOH HOH . J 5 HOH A 48 1048 103 HOH HOH . J 5 HOH A 49 1049 169 HOH HOH . J 5 HOH A 50 1050 198 HOH HOH . J 5 HOH A 51 1051 121 HOH HOH . J 5 HOH A 52 1052 50 HOH HOH . J 5 HOH A 53 1053 138 HOH HOH . J 5 HOH A 54 1054 72 HOH HOH . J 5 HOH A 55 1055 88 HOH HOH . J 5 HOH A 56 1056 107 HOH HOH . J 5 HOH A 57 1057 134 HOH HOH . J 5 HOH A 58 1058 44 HOH HOH . J 5 HOH A 59 1059 57 HOH HOH . J 5 HOH A 60 1060 108 HOH HOH . J 5 HOH A 61 1061 25 HOH HOH . J 5 HOH A 62 1062 89 HOH HOH . J 5 HOH A 63 1063 224 HOH HOH . J 5 HOH A 64 1064 218 HOH HOH . J 5 HOH A 65 1065 128 HOH HOH . J 5 HOH A 66 1066 147 HOH HOH . J 5 HOH A 67 1067 204 HOH HOH . J 5 HOH A 68 1068 26 HOH HOH . J 5 HOH A 69 1069 190 HOH HOH . J 5 HOH A 70 1070 71 HOH HOH . J 5 HOH A 71 1071 219 HOH HOH . J 5 HOH A 72 1072 166 HOH HOH . J 5 HOH A 73 1073 193 HOH HOH . J 5 HOH A 74 1074 183 HOH HOH . J 5 HOH A 75 1075 207 HOH HOH . J 5 HOH A 76 1076 181 HOH HOH . J 5 HOH A 77 1077 172 HOH HOH . J 5 HOH A 78 1078 162 HOH HOH . J 5 HOH A 79 1079 177 HOH HOH . J 5 HOH A 80 1080 195 HOH HOH . J 5 HOH A 81 1081 157 HOH HOH . J 5 HOH A 82 1082 47 HOH HOH . J 5 HOH A 83 1083 180 HOH HOH . J 5 HOH A 84 1084 170 HOH HOH . K 5 HOH B 1 901 76 HOH HOH . K 5 HOH B 2 902 32 HOH HOH . K 5 HOH B 3 903 91 HOH HOH . K 5 HOH B 4 904 94 HOH HOH . K 5 HOH B 5 905 129 HOH HOH . K 5 HOH B 6 906 73 HOH HOH . K 5 HOH B 7 907 211 HOH HOH . K 5 HOH B 8 908 212 HOH HOH . K 5 HOH B 9 909 222 HOH HOH . K 5 HOH B 10 910 21 HOH HOH . K 5 HOH B 11 911 106 HOH HOH . K 5 HOH B 12 912 6 HOH HOH . K 5 HOH B 13 913 68 HOH HOH . K 5 HOH B 14 914 15 HOH HOH . K 5 HOH B 15 915 86 HOH HOH . K 5 HOH B 16 916 208 HOH HOH . K 5 HOH B 17 917 132 HOH HOH . K 5 HOH B 18 918 87 HOH HOH . K 5 HOH B 19 919 78 HOH HOH . K 5 HOH B 20 920 200 HOH HOH . K 5 HOH B 21 921 136 HOH HOH . K 5 HOH B 22 922 100 HOH HOH . K 5 HOH B 23 923 182 HOH HOH . K 5 HOH B 24 924 210 HOH HOH . K 5 HOH B 25 925 173 HOH HOH . K 5 HOH B 26 926 161 HOH HOH . K 5 HOH B 27 927 5 HOH HOH . K 5 HOH B 28 928 139 HOH HOH . K 5 HOH B 29 929 146 HOH HOH . K 5 HOH B 30 930 116 HOH HOH . K 5 HOH B 31 931 194 HOH HOH . K 5 HOH B 32 932 117 HOH HOH . K 5 HOH B 33 933 54 HOH HOH . K 5 HOH B 34 934 53 HOH HOH . K 5 HOH B 35 935 27 HOH HOH . K 5 HOH B 36 936 110 HOH HOH . K 5 HOH B 37 937 97 HOH HOH . K 5 HOH B 38 938 160 HOH HOH . K 5 HOH B 39 939 66 HOH HOH . K 5 HOH B 40 940 152 HOH HOH . K 5 HOH B 41 941 189 HOH HOH . K 5 HOH B 42 942 167 HOH HOH . K 5 HOH B 43 943 191 HOH HOH . L 5 HOH C 1 901 43 HOH HOH . L 5 HOH C 2 902 23 HOH HOH . L 5 HOH C 3 903 20 HOH HOH . L 5 HOH C 4 904 31 HOH HOH . L 5 HOH C 5 905 99 HOH HOH . L 5 HOH C 6 906 4 HOH HOH . L 5 HOH C 7 907 202 HOH HOH . L 5 HOH C 8 908 197 HOH HOH . L 5 HOH C 9 909 8 HOH HOH . L 5 HOH C 10 910 16 HOH HOH . L 5 HOH C 11 911 109 HOH HOH . L 5 HOH C 12 912 77 HOH HOH . L 5 HOH C 13 913 1 HOH HOH . L 5 HOH C 14 914 81 HOH HOH . L 5 HOH C 15 915 205 HOH HOH . L 5 HOH C 16 916 38 HOH HOH . L 5 HOH C 17 917 123 HOH HOH . L 5 HOH C 18 918 154 HOH HOH . L 5 HOH C 19 919 220 HOH HOH . L 5 HOH C 20 920 126 HOH HOH . L 5 HOH C 21 921 56 HOH HOH . L 5 HOH C 22 922 141 HOH HOH . L 5 HOH C 23 923 216 HOH HOH . L 5 HOH C 24 924 46 HOH HOH . L 5 HOH C 25 925 203 HOH HOH . L 5 HOH C 26 926 186 HOH HOH . L 5 HOH C 27 927 148 HOH HOH . L 5 HOH C 28 928 171 HOH HOH . L 5 HOH C 29 929 127 HOH HOH . L 5 HOH C 30 930 192 HOH HOH . L 5 HOH C 31 931 104 HOH HOH . L 5 HOH C 32 932 13 HOH HOH . L 5 HOH C 33 933 130 HOH HOH . L 5 HOH C 34 934 151 HOH HOH . L 5 HOH C 35 935 37 HOH HOH . L 5 HOH C 36 936 221 HOH HOH . L 5 HOH C 37 937 24 HOH HOH . L 5 HOH C 38 938 140 HOH HOH . L 5 HOH C 39 939 17 HOH HOH . L 5 HOH C 40 940 156 HOH HOH . L 5 HOH C 41 941 153 HOH HOH . L 5 HOH C 42 942 33 HOH HOH . L 5 HOH C 43 943 164 HOH HOH . L 5 HOH C 44 944 199 HOH HOH . L 5 HOH C 45 945 79 HOH HOH . L 5 HOH C 46 946 28 HOH HOH . L 5 HOH C 47 947 70 HOH HOH . L 5 HOH C 48 948 90 HOH HOH . L 5 HOH C 49 949 137 HOH HOH . L 5 HOH C 50 950 217 HOH HOH . L 5 HOH C 51 951 60 HOH HOH . L 5 HOH C 52 952 209 HOH HOH . L 5 HOH C 53 953 61 HOH HOH . L 5 HOH C 54 954 131 HOH HOH . L 5 HOH C 55 955 83 HOH HOH . L 5 HOH C 56 956 184 HOH HOH . L 5 HOH C 57 957 178 HOH HOH . L 5 HOH C 58 958 75 HOH HOH . L 5 HOH C 59 959 111 HOH HOH . L 5 HOH C 60 960 206 HOH HOH . L 5 HOH C 61 961 18 HOH HOH . L 5 HOH C 62 962 188 HOH HOH . L 5 HOH C 63 963 187 HOH HOH . L 5 HOH C 64 964 175 HOH HOH . M 5 HOH D 1 901 10 HOH HOH . M 5 HOH D 2 902 74 HOH HOH . M 5 HOH D 3 903 40 HOH HOH . M 5 HOH D 4 904 225 HOH HOH . M 5 HOH D 5 905 125 HOH HOH . M 5 HOH D 6 906 62 HOH HOH . M 5 HOH D 7 907 213 HOH HOH . M 5 HOH D 8 908 201 HOH HOH . M 5 HOH D 9 909 215 HOH HOH . M 5 HOH D 10 910 135 HOH HOH . M 5 HOH D 11 911 174 HOH HOH . M 5 HOH D 12 912 113 HOH HOH . M 5 HOH D 13 913 223 HOH HOH . M 5 HOH D 14 914 9 HOH HOH . M 5 HOH D 15 915 59 HOH HOH . M 5 HOH D 16 916 48 HOH HOH . M 5 HOH D 17 917 58 HOH HOH . M 5 HOH D 18 918 84 HOH HOH . M 5 HOH D 19 919 214 HOH HOH . M 5 HOH D 20 920 52 HOH HOH . M 5 HOH D 21 921 14 HOH HOH . M 5 HOH D 22 922 63 HOH HOH . M 5 HOH D 23 923 102 HOH HOH . M 5 HOH D 24 924 82 HOH HOH . M 5 HOH D 25 925 176 HOH HOH . M 5 HOH D 26 926 143 HOH HOH . M 5 HOH D 27 927 101 HOH HOH . M 5 HOH D 28 928 179 HOH HOH . M 5 HOH D 29 929 93 HOH HOH . M 5 HOH D 30 930 155 HOH HOH . M 5 HOH D 31 931 149 HOH HOH . M 5 HOH D 32 932 42 HOH HOH . M 5 HOH D 33 933 163 HOH HOH . M 5 HOH D 34 934 185 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.148 _atom_site.Cartn_y 38.812 _atom_site.Cartn_z 49.291 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 801 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #