data_5N5S
#
_model_server_result.job_id            adP-Ppvxdfq53owQ3yCHAA 
_model_server_result.datetime_utc      '2024-10-19 11:40:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n5s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    5N5S 
#
_exptl.entry_id    5N5S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N5S 
_cell.length_a            89.38 
_cell.length_b            165.28 
_cell.length_c            138.38 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N5S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1,2 
C,D,H,I,J,K,N,O 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_855 -x+3,-y,z -1 0 0 0 -1 0 0 0 1 268.14 0 0 
3 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 178.76 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5N5S 
_atom_sites.fract_transf_matrix[1][1]    0.011188 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 600 600 NAP NAP . 
F 3 EDO B 1 501 2 EDO EDO . 
G 2 NAP B 1 502 601 NAP NAP . 
H 2 NAP C 1 501 602 NAP NAP . 
I 3 EDO D 1 501 1 EDO EDO . 
J 3 EDO D 1 502 4 EDO EDO . 
K 2 NAP D 1 503 603 NAP NAP . 
L 4 HOH A 1 701 158 HOH HOH . 
L 4 HOH A 2 702 43 HOH HOH . 
L 4 HOH A 3 703 155 HOH HOH . 
L 4 HOH A 4 704 152 HOH HOH . 
L 4 HOH A 5 705 4 HOH HOH . 
L 4 HOH A 6 706 174 HOH HOH . 
L 4 HOH A 7 707 58 HOH HOH . 
L 4 HOH A 8 708 128 HOH HOH . 
L 4 HOH A 9 709 67 HOH HOH . 
L 4 HOH A 10 710 140 HOH HOH . 
L 4 HOH A 11 711 65 HOH HOH . 
L 4 HOH A 12 712 145 HOH HOH . 
L 4 HOH A 13 713 163 HOH HOH . 
L 4 HOH A 14 714 159 HOH HOH . 
L 4 HOH A 15 715 44 HOH HOH . 
L 4 HOH A 16 716 64 HOH HOH . 
L 4 HOH A 17 717 45 HOH HOH . 
L 4 HOH A 18 718 5 HOH HOH . 
L 4 HOH A 19 719 48 HOH HOH . 
L 4 HOH A 20 720 52 HOH HOH . 
L 4 HOH A 21 721 69 HOH HOH . 
L 4 HOH A 22 722 55 HOH HOH . 
L 4 HOH A 23 723 8 HOH HOH . 
L 4 HOH A 24 724 1 HOH HOH . 
L 4 HOH A 25 725 60 HOH HOH . 
L 4 HOH A 26 726 54 HOH HOH . 
L 4 HOH A 27 727 34 HOH HOH . 
L 4 HOH A 28 728 35 HOH HOH . 
L 4 HOH A 29 729 40 HOH HOH . 
L 4 HOH A 30 730 146 HOH HOH . 
L 4 HOH A 31 731 41 HOH HOH . 
L 4 HOH A 32 732 12 HOH HOH . 
L 4 HOH A 33 733 33 HOH HOH . 
L 4 HOH A 34 734 164 HOH HOH . 
L 4 HOH A 35 735 53 HOH HOH . 
L 4 HOH A 36 736 166 HOH HOH . 
L 4 HOH A 37 737 36 HOH HOH . 
L 4 HOH A 38 738 51 HOH HOH . 
L 4 HOH A 39 739 154 HOH HOH . 
L 4 HOH A 40 740 153 HOH HOH . 
L 4 HOH A 41 741 123 HOH HOH . 
L 4 HOH A 42 742 56 HOH HOH . 
L 4 HOH A 43 743 122 HOH HOH . 
L 4 HOH A 44 744 167 HOH HOH . 
L 4 HOH A 45 745 3 HOH HOH . 
L 4 HOH A 46 746 74 HOH HOH . 
L 4 HOH A 47 747 42 HOH HOH . 
L 4 HOH A 48 748 2 HOH HOH . 
L 4 HOH A 49 749 172 HOH HOH . 
L 4 HOH A 50 750 50 HOH HOH . 
L 4 HOH A 51 751 121 HOH HOH . 
L 4 HOH A 52 752 175 HOH HOH . 
L 4 HOH A 53 753 59 HOH HOH . 
L 4 HOH A 54 754 68 HOH HOH . 
L 4 HOH A 55 755 13 HOH HOH . 
L 4 HOH A 56 756 61 HOH HOH . 
L 4 HOH A 57 757 156 HOH HOH . 
L 4 HOH A 58 758 49 HOH HOH . 
L 4 HOH A 59 759 133 HOH HOH . 
L 4 HOH A 60 760 102 HOH HOH . 
L 4 HOH A 61 761 157 HOH HOH . 
L 4 HOH A 62 762 39 HOH HOH . 
L 4 HOH A 63 763 57 HOH HOH . 
L 4 HOH A 64 764 46 HOH HOH . 
L 4 HOH A 65 765 47 HOH HOH . 
M 4 HOH B 1 601 103 HOH HOH . 
M 4 HOH B 2 602 143 HOH HOH . 
M 4 HOH B 3 603 96 HOH HOH . 
M 4 HOH B 4 604 151 HOH HOH . 
M 4 HOH B 5 605 99 HOH HOH . 
M 4 HOH B 6 606 147 HOH HOH . 
M 4 HOH B 7 607 37 HOH HOH . 
M 4 HOH B 8 608 117 HOH HOH . 
M 4 HOH B 9 609 87 HOH HOH . 
M 4 HOH B 10 610 118 HOH HOH . 
M 4 HOH B 11 611 107 HOH HOH . 
M 4 HOH B 12 612 85 HOH HOH . 
M 4 HOH B 13 613 119 HOH HOH . 
M 4 HOH B 14 614 116 HOH HOH . 
M 4 HOH B 15 615 100 HOH HOH . 
M 4 HOH B 16 616 94 HOH HOH . 
M 4 HOH B 17 617 63 HOH HOH . 
M 4 HOH B 18 618 104 HOH HOH . 
M 4 HOH B 19 619 160 HOH HOH . 
M 4 HOH B 20 620 161 HOH HOH . 
M 4 HOH B 21 621 124 HOH HOH . 
M 4 HOH B 22 622 72 HOH HOH . 
M 4 HOH B 23 623 105 HOH HOH . 
M 4 HOH B 24 624 83 HOH HOH . 
M 4 HOH B 25 625 162 HOH HOH . 
M 4 HOH B 26 626 129 HOH HOH . 
M 4 HOH B 27 627 173 HOH HOH . 
M 4 HOH B 28 628 66 HOH HOH . 
M 4 HOH B 29 629 9 HOH HOH . 
M 4 HOH B 30 630 98 HOH HOH . 
M 4 HOH B 31 631 106 HOH HOH . 
M 4 HOH B 32 632 15 HOH HOH . 
M 4 HOH B 33 633 38 HOH HOH . 
M 4 HOH B 34 634 101 HOH HOH . 
M 4 HOH B 35 635 14 HOH HOH . 
M 4 HOH B 36 636 149 HOH HOH . 
M 4 HOH B 37 637 62 HOH HOH . 
M 4 HOH B 38 638 132 HOH HOH . 
M 4 HOH B 39 639 16 HOH HOH . 
M 4 HOH B 40 640 97 HOH HOH . 
M 4 HOH B 41 641 18 HOH HOH . 
M 4 HOH B 42 642 95 HOH HOH . 
N 4 HOH C 1 601 134 HOH HOH . 
N 4 HOH C 2 602 70 HOH HOH . 
N 4 HOH C 3 603 86 HOH HOH . 
N 4 HOH C 4 604 168 HOH HOH . 
N 4 HOH C 5 605 6 HOH HOH . 
N 4 HOH C 6 606 108 HOH HOH . 
N 4 HOH C 7 607 113 HOH HOH . 
N 4 HOH C 8 608 75 HOH HOH . 
N 4 HOH C 9 609 137 HOH HOH . 
N 4 HOH C 10 610 126 HOH HOH . 
N 4 HOH C 11 611 111 HOH HOH . 
N 4 HOH C 12 612 71 HOH HOH . 
N 4 HOH C 13 613 148 HOH HOH . 
N 4 HOH C 14 614 110 HOH HOH . 
N 4 HOH C 15 615 169 HOH HOH . 
N 4 HOH C 16 616 141 HOH HOH . 
N 4 HOH C 17 617 112 HOH HOH . 
N 4 HOH C 18 618 77 HOH HOH . 
N 4 HOH C 19 619 165 HOH HOH . 
N 4 HOH C 20 620 90 HOH HOH . 
N 4 HOH C 21 621 131 HOH HOH . 
N 4 HOH C 22 622 76 HOH HOH . 
N 4 HOH C 23 623 93 HOH HOH . 
N 4 HOH C 24 624 135 HOH HOH . 
N 4 HOH C 25 625 7 HOH HOH . 
N 4 HOH C 26 626 20 HOH HOH . 
N 4 HOH C 27 627 78 HOH HOH . 
N 4 HOH C 28 628 73 HOH HOH . 
N 4 HOH C 29 629 88 HOH HOH . 
N 4 HOH C 30 630 11 HOH HOH . 
N 4 HOH C 31 631 139 HOH HOH . 
N 4 HOH C 32 632 120 HOH HOH . 
N 4 HOH C 33 633 21 HOH HOH . 
N 4 HOH C 34 634 170 HOH HOH . 
N 4 HOH C 35 635 19 HOH HOH . 
N 4 HOH C 36 636 22 HOH HOH . 
N 4 HOH C 37 637 23 HOH HOH . 
O 4 HOH D 1 601 171 HOH HOH . 
O 4 HOH D 2 602 28 HOH HOH . 
O 4 HOH D 3 603 127 HOH HOH . 
O 4 HOH D 4 604 80 HOH HOH . 
O 4 HOH D 5 605 82 HOH HOH . 
O 4 HOH D 6 606 130 HOH HOH . 
O 4 HOH D 7 607 114 HOH HOH . 
O 4 HOH D 8 608 91 HOH HOH . 
O 4 HOH D 9 609 150 HOH HOH . 
O 4 HOH D 10 610 89 HOH HOH . 
O 4 HOH D 11 611 84 HOH HOH . 
O 4 HOH D 12 612 79 HOH HOH . 
O 4 HOH D 13 613 115 HOH HOH . 
O 4 HOH D 14 614 81 HOH HOH . 
O 4 HOH D 15 615 92 HOH HOH . 
O 4 HOH D 16 616 30 HOH HOH . 
O 4 HOH D 17 617 144 HOH HOH . 
O 4 HOH D 18 618 142 HOH HOH . 
O 4 HOH D 19 619 10 HOH HOH . 
O 4 HOH D 20 620 109 HOH HOH . 
O 4 HOH D 21 621 25 HOH HOH . 
O 4 HOH D 22 622 24 HOH HOH . 
O 4 HOH D 23 623 27 HOH HOH . 
O 4 HOH D 24 624 138 HOH HOH . 
O 4 HOH D 25 625 31 HOH HOH . 
O 4 HOH D 26 626 136 HOH HOH . 
O 4 HOH D 27 627 125 HOH HOH . 
O 4 HOH D 28 628 32 HOH HOH . 
O 4 HOH D 29 629 29 HOH HOH . 
O 4 HOH D 30 630 17 HOH HOH . 
O 4 HOH D 31 631 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 172.202 7.038 -8.11 1 77.06 ? C1 EDO 501 B 1 
HETATM 2 O O1 EDO . . . F 3 171.493 5.998 -8.783 1 73.95 ? O1 EDO 501 B 1 
HETATM 3 C C2 EDO . . . F 3 173.559 6.519 -7.525 1 80.37 ? C2 EDO 501 B 1 
HETATM 4 O O2 EDO . . . F 3 174.373 5.924 -8.535 1 80.93 ? O2 EDO 501 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#