data_5N5W # _model_server_result.job_id rGSzKsjP9i0quxozu89KsQ _model_server_result.datetime_utc '2025-07-30 17:03:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 5N5W # _exptl.entry_id 5N5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N5W _cell.length_a 81.293 _cell.length_b 112.286 _cell.length_c 62.506 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C HIS 3 P HIS 88 1_555 B N SEP 4 P SEP 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C SEP 4 P SEP 89 1_555 B N SER 5 P SER 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A OE1 GLU 7 A GLU 2 1_555 D MG MG . A MG 302 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 A OE1 GLN 13 A GLN 8 1_555 H MG MG . A MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc4 A OE1 GLU 40 A GLU 35 1_555 G CA CA . A CA 305 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A OE2 GLU 40 A GLU 35 1_555 G CA CA . A CA 305 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc6 A OE1 GLU 85 A GLU 80 1_555 H MG MG . A MG 306 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 A O GLU 115 A GLU 110 1_555 G CA CA . A CA 305 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 A O GLU 166 A GLU 161 1_555 C MG MG . A MG 301 7_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc9 A OE2 GLU 193 A GLU 188 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 D MG MG . A MG 302 1_555 J O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc11 D MG MG . A MG 302 1_555 J O HOH . A HOH 412 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc12 G CA CA . A CA 305 1_555 J O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc13 G CA CA . A CA 305 1_555 J O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc14 G CA CA . A CA 305 1_555 J O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc15 H MG MG . A MG 306 1_555 J O HOH . A HOH 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N5W _atom_sites.fract_transf_matrix[1][1] 0.012301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 232 MG MG . D 3 MG A 1 302 233 MG MG . E 4 CL A 1 303 235 CL CL . F 4 CL A 1 304 236 CL CL . G 5 CA A 1 305 239 CA CA . H 3 MG A 1 306 240 MG MG . I 6 8OE A 1 307 1 8OE NV3 . J 7 HOH A 1 401 216 HOH HOH . J 7 HOH A 2 402 158 HOH HOH . J 7 HOH A 3 403 166 HOH HOH . J 7 HOH A 4 404 189 HOH HOH . J 7 HOH A 5 405 157 HOH HOH . J 7 HOH A 6 406 229 HOH HOH . J 7 HOH A 7 407 161 HOH HOH . J 7 HOH A 8 408 313 HOH HOH . J 7 HOH A 9 409 191 HOH HOH . J 7 HOH A 10 410 165 HOH HOH . J 7 HOH A 11 411 94 HOH HOH . J 7 HOH A 12 412 159 HOH HOH . J 7 HOH A 13 413 333 HOH HOH . J 7 HOH A 14 414 139 HOH HOH . J 7 HOH A 15 415 132 HOH HOH . J 7 HOH A 16 416 228 HOH HOH . J 7 HOH A 17 417 116 HOH HOH . J 7 HOH A 18 418 214 HOH HOH . J 7 HOH A 19 419 40 HOH HOH . J 7 HOH A 20 420 57 HOH HOH . J 7 HOH A 21 421 27 HOH HOH . J 7 HOH A 22 422 98 HOH HOH . J 7 HOH A 23 423 156 HOH HOH . J 7 HOH A 24 424 21 HOH HOH . J 7 HOH A 25 425 63 HOH HOH . J 7 HOH A 26 426 4 HOH HOH . J 7 HOH A 27 427 122 HOH HOH . J 7 HOH A 28 428 55 HOH HOH . J 7 HOH A 29 429 86 HOH HOH . J 7 HOH A 30 430 11 HOH HOH . J 7 HOH A 31 431 203 HOH HOH . J 7 HOH A 32 432 38 HOH HOH . J 7 HOH A 33 433 6 HOH HOH . J 7 HOH A 34 434 99 HOH HOH . J 7 HOH A 35 435 8 HOH HOH . J 7 HOH A 36 436 36 HOH HOH . J 7 HOH A 37 437 175 HOH HOH . J 7 HOH A 38 438 167 HOH HOH . J 7 HOH A 39 439 100 HOH HOH . J 7 HOH A 40 440 59 HOH HOH . J 7 HOH A 41 441 245 HOH HOH . J 7 HOH A 42 442 1 HOH HOH . J 7 HOH A 43 443 80 HOH HOH . J 7 HOH A 44 444 18 HOH HOH . J 7 HOH A 45 445 24 HOH HOH . J 7 HOH A 46 446 50 HOH HOH . J 7 HOH A 47 447 136 HOH HOH . J 7 HOH A 48 448 150 HOH HOH . J 7 HOH A 49 449 45 HOH HOH . J 7 HOH A 50 450 47 HOH HOH . J 7 HOH A 51 451 2 HOH HOH . J 7 HOH A 52 452 14 HOH HOH . J 7 HOH A 53 453 328 HOH HOH . J 7 HOH A 54 454 140 HOH HOH . J 7 HOH A 55 455 44 HOH HOH . J 7 HOH A 56 456 287 HOH HOH . J 7 HOH A 57 457 17 HOH HOH . J 7 HOH A 58 458 160 HOH HOH . J 7 HOH A 59 459 20 HOH HOH . J 7 HOH A 60 460 299 HOH HOH . J 7 HOH A 61 461 78 HOH HOH . J 7 HOH A 62 462 141 HOH HOH . J 7 HOH A 63 463 12 HOH HOH . J 7 HOH A 64 464 155 HOH HOH . J 7 HOH A 65 465 64 HOH HOH . J 7 HOH A 66 466 288 HOH HOH . J 7 HOH A 67 467 42 HOH HOH . J 7 HOH A 68 468 226 HOH HOH . J 7 HOH A 69 469 127 HOH HOH . J 7 HOH A 70 470 53 HOH HOH . J 7 HOH A 71 471 107 HOH HOH . J 7 HOH A 72 472 184 HOH HOH . J 7 HOH A 73 473 30 HOH HOH . J 7 HOH A 74 474 9 HOH HOH . J 7 HOH A 75 475 69 HOH HOH . J 7 HOH A 76 476 32 HOH HOH . J 7 HOH A 77 477 71 HOH HOH . J 7 HOH A 78 478 39 HOH HOH . J 7 HOH A 79 479 109 HOH HOH . J 7 HOH A 80 480 96 HOH HOH . J 7 HOH A 81 481 29 HOH HOH . J 7 HOH A 82 482 66 HOH HOH . J 7 HOH A 83 483 241 HOH HOH . J 7 HOH A 84 484 35 HOH HOH . J 7 HOH A 85 485 320 HOH HOH . J 7 HOH A 86 486 220 HOH HOH . J 7 HOH A 87 487 16 HOH HOH . J 7 HOH A 88 488 62 HOH HOH . J 7 HOH A 89 489 7 HOH HOH . J 7 HOH A 90 490 26 HOH HOH . J 7 HOH A 91 491 318 HOH HOH . J 7 HOH A 92 492 67 HOH HOH . J 7 HOH A 93 493 211 HOH HOH . J 7 HOH A 94 494 77 HOH HOH . J 7 HOH A 95 495 134 HOH HOH . J 7 HOH A 96 496 23 HOH HOH . J 7 HOH A 97 497 25 HOH HOH . J 7 HOH A 98 498 195 HOH HOH . J 7 HOH A 99 499 51 HOH HOH . J 7 HOH A 100 500 76 HOH HOH . J 7 HOH A 101 501 33 HOH HOH . J 7 HOH A 102 502 15 HOH HOH . J 7 HOH A 103 503 31 HOH HOH . J 7 HOH A 104 504 149 HOH HOH . J 7 HOH A 105 505 49 HOH HOH . J 7 HOH A 106 506 88 HOH HOH . J 7 HOH A 107 507 168 HOH HOH . J 7 HOH A 108 508 148 HOH HOH . J 7 HOH A 109 509 70 HOH HOH . J 7 HOH A 110 510 54 HOH HOH . J 7 HOH A 111 511 75 HOH HOH . J 7 HOH A 112 512 187 HOH HOH . J 7 HOH A 113 513 291 HOH HOH . J 7 HOH A 114 514 188 HOH HOH . J 7 HOH A 115 515 65 HOH HOH . J 7 HOH A 116 516 170 HOH HOH . J 7 HOH A 117 517 10 HOH HOH . J 7 HOH A 118 518 82 HOH HOH . J 7 HOH A 119 519 125 HOH HOH . J 7 HOH A 120 520 68 HOH HOH . J 7 HOH A 121 521 46 HOH HOH . J 7 HOH A 122 522 5 HOH HOH . J 7 HOH A 123 523 194 HOH HOH . J 7 HOH A 124 524 146 HOH HOH . J 7 HOH A 125 525 92 HOH HOH . J 7 HOH A 126 526 37 HOH HOH . J 7 HOH A 127 527 112 HOH HOH . J 7 HOH A 128 528 143 HOH HOH . J 7 HOH A 129 529 153 HOH HOH . J 7 HOH A 130 530 72 HOH HOH . J 7 HOH A 131 531 135 HOH HOH . J 7 HOH A 132 532 85 HOH HOH . J 7 HOH A 133 533 152 HOH HOH . J 7 HOH A 134 534 93 HOH HOH . J 7 HOH A 135 535 223 HOH HOH . J 7 HOH A 136 536 19 HOH HOH . J 7 HOH A 137 537 13 HOH HOH . J 7 HOH A 138 538 205 HOH HOH . J 7 HOH A 139 539 83 HOH HOH . J 7 HOH A 140 540 87 HOH HOH . J 7 HOH A 141 541 130 HOH HOH . J 7 HOH A 142 542 105 HOH HOH . J 7 HOH A 143 543 235 HOH HOH . J 7 HOH A 144 544 74 HOH HOH . J 7 HOH A 145 545 147 HOH HOH . J 7 HOH A 146 546 201 HOH HOH . J 7 HOH A 147 547 177 HOH HOH . J 7 HOH A 148 548 232 HOH HOH . J 7 HOH A 149 549 61 HOH HOH . J 7 HOH A 150 550 60 HOH HOH . J 7 HOH A 151 551 111 HOH HOH . J 7 HOH A 152 552 193 HOH HOH . J 7 HOH A 153 553 142 HOH HOH . J 7 HOH A 154 554 113 HOH HOH . J 7 HOH A 155 555 327 HOH HOH . J 7 HOH A 156 556 325 HOH HOH . J 7 HOH A 157 557 163 HOH HOH . J 7 HOH A 158 558 315 HOH HOH . J 7 HOH A 159 559 114 HOH HOH . J 7 HOH A 160 560 145 HOH HOH . J 7 HOH A 161 561 247 HOH HOH . J 7 HOH A 162 562 34 HOH HOH . J 7 HOH A 163 563 128 HOH HOH . J 7 HOH A 164 564 22 HOH HOH . J 7 HOH A 165 565 162 HOH HOH . J 7 HOH A 166 566 118 HOH HOH . J 7 HOH A 167 567 186 HOH HOH . J 7 HOH A 168 568 48 HOH HOH . J 7 HOH A 169 569 169 HOH HOH . J 7 HOH A 170 570 129 HOH HOH . J 7 HOH A 171 571 180 HOH HOH . J 7 HOH A 172 572 133 HOH HOH . J 7 HOH A 173 573 89 HOH HOH . J 7 HOH A 174 574 97 HOH HOH . J 7 HOH A 175 575 329 HOH HOH . J 7 HOH A 176 576 101 HOH HOH . J 7 HOH A 177 577 137 HOH HOH . J 7 HOH A 178 578 171 HOH HOH . J 7 HOH A 179 579 81 HOH HOH . J 7 HOH A 180 580 176 HOH HOH . J 7 HOH A 181 581 79 HOH HOH . J 7 HOH A 182 582 121 HOH HOH . J 7 HOH A 183 583 164 HOH HOH . J 7 HOH A 184 584 123 HOH HOH . J 7 HOH A 185 585 316 HOH HOH . J 7 HOH A 186 586 108 HOH HOH . J 7 HOH A 187 587 120 HOH HOH . J 7 HOH A 188 588 56 HOH HOH . J 7 HOH A 189 589 237 HOH HOH . J 7 HOH A 190 590 227 HOH HOH . J 7 HOH A 191 591 248 HOH HOH . J 7 HOH A 192 592 138 HOH HOH . J 7 HOH A 193 593 183 HOH HOH . J 7 HOH A 194 594 106 HOH HOH . J 7 HOH A 195 595 251 HOH HOH . J 7 HOH A 196 596 212 HOH HOH . J 7 HOH A 197 597 319 HOH HOH . K 7 HOH P 1 101 104 HOH HOH . K 7 HOH P 2 102 95 HOH HOH . K 7 HOH P 3 103 206 HOH HOH . K 7 HOH P 4 104 221 HOH HOH . K 7 HOH P 5 105 43 HOH HOH . K 7 HOH P 6 106 192 HOH HOH . K 7 HOH P 7 107 3 HOH HOH . K 7 HOH P 8 108 144 HOH HOH . K 7 HOH P 9 109 330 HOH HOH . K 7 HOH P 10 110 90 HOH HOH . K 7 HOH P 11 111 73 HOH HOH . K 7 HOH P 12 112 58 HOH HOH . K 7 HOH P 13 113 154 HOH HOH . K 7 HOH P 14 114 52 HOH HOH . K 7 HOH P 15 115 326 HOH HOH . K 7 HOH P 16 116 210 HOH HOH . K 7 HOH P 17 117 239 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.345 _atom_site.Cartn_y -14.815 _atom_site.Cartn_z 20.721 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.9 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 306 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #