data_5N66 # _model_server_result.job_id h8ymZSsznlddZkQ3J0X7Aw _model_server_result.datetime_utc '2024-10-11 01:30:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5N66 # _exptl.entry_id 5N66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.657 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N66 _cell.length_a 66.75 _cell.length_b 74 _cell.length_c 79.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H37 N5 O3' _chem_comp.formula_weight 527.657 _chem_comp.id B96 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 B96 doub 70 n n C1 N2 B96 sing 71 n n C1 N9 B96 sing 72 n n N2 C3 B96 sing 73 n n N2 H2 B96 sing 74 n n C3 C4 B96 doub 75 n y C3 C8 B96 sing 76 n y C4 C5 B96 sing 77 n y C4 C31 B96 sing 78 n y C5 C6 B96 doub 79 n y C5 C34 B96 sing 80 n y C6 C7 B96 sing 81 n y C6 O41 B96 sing 82 n n C31 C32 B96 doub 83 n y C31 H31 B96 sing 84 n n C32 C33 B96 sing 85 n y C32 H32 B96 sing 86 n n C33 C34 B96 doub 87 n y C33 H33 B96 sing 88 n n C34 H34 B96 sing 89 n n C7 C8 B96 doub 90 n y C7 H7 B96 sing 91 n n C8 H8 B96 sing 92 n n N9 C10 B96 sing 93 n n N9 H9 B96 sing 94 n n C10 C14 B96 doub 95 n y C10 N11 B96 sing 96 n y C14 C13 B96 sing 97 n y C14 H14 B96 sing 98 n n C13 N12 B96 doub 99 n y C13 C16 B96 sing 100 n n N12 N11 B96 sing 101 n y N11 C15 B96 sing 102 n y C15 C20 B96 doub 103 n y C15 C24 B96 sing 104 n y C17 C16 B96 sing 105 n n C17 H171 B96 sing 106 n n C17 H172 B96 sing 107 n n C17 H173 B96 sing 108 n n C18 C16 B96 sing 109 n n C18 H181 B96 sing 110 n n C18 H182 B96 sing 111 n n C18 H183 B96 sing 112 n n C19 C16 B96 sing 113 n n C19 H191 B96 sing 114 n n C19 H192 B96 sing 115 n n C19 H193 B96 sing 116 n n C20 C21 B96 sing 117 n y C20 H20 B96 sing 118 n n C21 C22 B96 doub 119 n y C21 H21 B96 sing 120 n n C22 C23 B96 sing 121 n y C22 C25 B96 sing 122 n n C23 C24 B96 doub 123 n y C23 H23 B96 sing 124 n n C24 H24 B96 sing 125 n n C25 H251 B96 sing 126 n n C25 H252 B96 sing 127 n n C25 H253 B96 sing 128 n n O41 C42 B96 sing 129 n n C42 C43 B96 sing 130 n n C42 H421 B96 sing 131 n n C42 H422 B96 sing 132 n n C43 N44 B96 sing 133 n n C43 H431 B96 sing 134 n n C43 H432 B96 sing 135 n n N44 C45 B96 sing 136 n n N44 C49 B96 sing 137 n n C45 C46 B96 sing 138 n n C45 H451 B96 sing 139 n n C45 H452 B96 sing 140 n n C46 O47 B96 sing 141 n n C46 H461 B96 sing 142 n n C46 H462 B96 sing 143 n n O47 C48 B96 sing 144 n n C48 C49 B96 sing 145 n n C48 H481 B96 sing 146 n n C48 H482 B96 sing 147 n n C49 H491 B96 sing 148 n n C49 H492 B96 sing 149 n n # _atom_sites.entry_id 5N66 _atom_sites.fract_transf_matrix[1][1] 0.014981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BW1 A 1 401 1 BW1 BW1 . C 3 B96 A 1 402 1 B96 BIR . D 4 HOH A 1 501 14 HOH HOH . D 4 HOH A 2 502 15 HOH HOH . D 4 HOH A 3 503 1 HOH HOH . D 4 HOH A 4 504 6 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 10 HOH HOH . D 4 HOH A 7 507 4 HOH HOH . D 4 HOH A 8 508 13 HOH HOH . D 4 HOH A 9 509 2 HOH HOH . D 4 HOH A 10 510 3 HOH HOH . D 4 HOH A 11 511 8 HOH HOH . D 4 HOH A 12 512 7 HOH HOH . D 4 HOH A 13 513 17 HOH HOH . D 4 HOH A 14 514 11 HOH HOH . D 4 HOH A 15 515 9 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 12 HOH HOH . D 4 HOH A 18 518 16 HOH HOH . D 4 HOH A 19 519 18 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B96 . . . C 3 0.904 -4.135 15.908 1 78.85 ? C1 B96 402 A 1 HETATM 2 O O1 B96 . . . C 3 0.01 -3.558 16.527 1 78.96 ? O1 B96 402 A 1 HETATM 3 N N2 B96 . . . C 3 2.137 -4.325 16.419 1 77.47 ? N2 B96 402 A 1 HETATM 4 C C3 B96 . . . C 3 2.463 -3.9 17.643 1 76.27 ? C3 B96 402 A 1 HETATM 5 C C4 B96 . . . C 3 3.63 -3.15 17.72 1 75.37 ? C4 B96 402 A 1 HETATM 6 C C5 B96 . . . C 3 4.061 -2.676 18.953 1 75.07 ? C5 B96 402 A 1 HETATM 7 C C6 B96 . . . C 3 3.327 -2.967 20.096 1 75.31 ? C6 B96 402 A 1 HETATM 8 C C31 B96 . . . C 3 4.357 -2.862 16.57 1 73.24 ? C31 B96 402 A 1 HETATM 9 C C32 B96 . . . C 3 5.518 -2.101 16.655 1 71.96 ? C32 B96 402 A 1 HETATM 10 C C33 B96 . . . C 3 5.948 -1.63 17.89 1 72.17 ? C33 B96 402 A 1 HETATM 11 C C34 B96 . . . C 3 5.22 -1.915 19.041 1 73.78 ? C34 B96 402 A 1 HETATM 12 C C7 B96 . . . C 3 2.165 -3.727 20.028 1 74.66 ? C7 B96 402 A 1 HETATM 13 C C8 B96 . . . C 3 1.736 -4.203 18.794 1 75.25 ? C8 B96 402 A 1 HETATM 14 N N9 B96 . . . C 3 0.725 -4.621 14.665 1 80.39 ? N9 B96 402 A 1 HETATM 15 C C10 B96 . . . C 3 -0.449 -4.511 14.034 1 81.71 ? C10 B96 402 A 1 HETATM 16 C C14 B96 . . . C 3 -1.202 -3.417 13.958 1 82.92 ? C14 B96 402 A 1 HETATM 17 C C13 B96 . . . C 3 -2.232 -3.814 13.224 1 84.3 ? C13 B96 402 A 1 HETATM 18 N N12 B96 . . . C 3 -2.072 -5.087 12.874 1 82.6 ? N12 B96 402 A 1 HETATM 19 N N11 B96 . . . C 3 -1.028 -5.506 13.344 1 81.21 ? N11 B96 402 A 1 HETATM 20 C C15 B96 . . . C 3 -0.589 -6.76 13.168 1 83.52 ? C15 B96 402 A 1 HETATM 21 C C17 B96 . . . C 3 -3.019 -2.003 11.698 1 81.45 ? C17 B96 402 A 1 HETATM 22 C C18 B96 . . . C 3 -3.949 -2.157 14.006 1 83.31 ? C18 B96 402 A 1 HETATM 23 C C19 B96 . . . C 3 -4.545 -3.884 12.303 1 80.85 ? C19 B96 402 A 1 HETATM 24 C C16 B96 . . . C 3 -3.436 -2.961 12.812 1 81.04 ? C16 B96 402 A 1 HETATM 25 C C20 B96 . . . C 3 -0.047 -7.504 14.214 1 82.18 ? C20 B96 402 A 1 HETATM 26 C C21 B96 . . . C 3 0.393 -8.805 13.998 1 82.5 ? C21 B96 402 A 1 HETATM 27 C C22 B96 . . . C 3 0.291 -9.376 12.734 1 83.03 ? C22 B96 402 A 1 HETATM 28 C C23 B96 . . . C 3 -0.254 -8.641 11.689 1 83.41 ? C23 B96 402 A 1 HETATM 29 C C24 B96 . . . C 3 -0.694 -7.342 11.91 1 82.97 ? C24 B96 402 A 1 HETATM 30 C C25 B96 . . . C 3 0.73 -10.678 12.516 1 81.89 ? C25 B96 402 A 1 HETATM 31 O O41 B96 . . . C 3 3.819 -2.467 21.262 1 75.95 ? O41 B96 402 A 1 HETATM 32 C C42 B96 . . . C 3 2.816 -2.443 22.283 1 77.05 ? C42 B96 402 A 1 HETATM 33 C C43 B96 . . . C 3 3.299 -1.57 23.445 1 78.48 ? C43 B96 402 A 1 HETATM 34 N N44 B96 . . . C 3 2.796 -0.19 23.34 1 80.5 ? N44 B96 402 A 1 HETATM 35 C C45 B96 . . . C 3 3.281 0.582 24.493 1 81.33 ? C45 B96 402 A 1 HETATM 36 C C46 B96 . . . C 3 2.842 2.03 24.387 1 81.63 ? C46 B96 402 A 1 HETATM 37 O O47 B96 . . . C 3 2.003 2.189 23.23 1 82.23 ? O47 B96 402 A 1 HETATM 38 C C48 B96 . . . C 3 2.723 1.878 22.021 1 81.83 ? C48 B96 402 A 1 HETATM 39 C C49 B96 . . . C 3 3.271 0.463 22.11 1 80.81 ? C49 B96 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #