data_5N6A
#
_model_server_result.job_id            bl2I7EmE9lEZqfFO9vN0UQ 
_model_server_result.datetime_utc      '2024-10-18 15:26:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n6a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    5N6A 
#
_exptl.entry_id    5N6A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N6A 
_cell.length_a            87.66 
_cell.length_b            149.83 
_cell.length_c            154.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N6A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 185 A THR 185 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc2 A OG SER 242 A SER 242 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 B O3B ADP . A ADP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc4 C O4 PO4 . A PO4 902 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 D MG MG . A MG 903 1_555 F O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc6 D MG MG . A MG 903 1_555 F O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5N6A 
_atom_sites.fract_transf_matrix[1][1]    0.011408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 901 1 ADP ADP . 
C 3 PO4 A 1 902 2 PO4 PO4 . 
D 4 MG A 1 903 3 MG MG . 
E 5 GOL A 1 904 1 GOL GOL . 
F 6 HOH A 1 1001 35 HOH HOH . 
F 6 HOH A 2 1002 4 HOH HOH . 
F 6 HOH A 3 1003 1 HOH HOH . 
F 6 HOH A 4 1004 2 HOH HOH . 
F 6 HOH A 5 1005 6 HOH HOH . 
F 6 HOH A 6 1006 33 HOH HOH . 
F 6 HOH A 7 1007 15 HOH HOH . 
F 6 HOH A 8 1008 23 HOH HOH . 
F 6 HOH A 9 1009 11 HOH HOH . 
F 6 HOH A 10 1010 10 HOH HOH . 
F 6 HOH A 11 1011 14 HOH HOH . 
F 6 HOH A 12 1012 7 HOH HOH . 
F 6 HOH A 13 1013 32 HOH HOH . 
F 6 HOH A 14 1014 36 HOH HOH . 
F 6 HOH A 15 1015 38 HOH HOH . 
F 6 HOH A 16 1016 37 HOH HOH . 
F 6 HOH A 17 1017 13 HOH HOH . 
F 6 HOH A 18 1018 27 HOH HOH . 
F 6 HOH A 19 1019 29 HOH HOH . 
F 6 HOH A 20 1020 17 HOH HOH . 
F 6 HOH A 21 1021 12 HOH HOH . 
F 6 HOH A 22 1022 24 HOH HOH . 
F 6 HOH A 23 1023 9 HOH HOH . 
F 6 HOH A 24 1024 26 HOH HOH . 
F 6 HOH A 25 1025 16 HOH HOH . 
F 6 HOH A 26 1026 25 HOH HOH . 
F 6 HOH A 27 1027 3 HOH HOH . 
F 6 HOH A 28 1028 22 HOH HOH . 
F 6 HOH A 29 1029 34 HOH HOH . 
F 6 HOH A 30 1030 30 HOH HOH . 
F 6 HOH A 31 1031 19 HOH HOH . 
F 6 HOH A 32 1032 8 HOH HOH . 
F 6 HOH A 33 1033 18 HOH HOH . 
F 6 HOH A 34 1034 28 HOH HOH . 
F 6 HOH A 35 1035 21 HOH HOH . 
F 6 HOH A 36 1036 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -19.962 34.839 -25.117 1 61.63 ? PB ADP 901 A 1 
HETATM 2 O O1B ADP . . . B 2 -18.901 35.161 -26.081 1 61.41 -1 O1B ADP 901 A 1 
HETATM 3 O O2B ADP . . . B 2 -20.214 36.053 -24.396 1 62.52 ? O2B ADP 901 A 1 
HETATM 4 O O3B ADP . . . B 2 -21.184 34.302 -25.881 1 60.87 ? O3B ADP 901 A 1 
HETATM 5 P PA ADP . . . B 2 -19.835 32.684 -23.067 1 54.19 ? PA ADP 901 A 1 
HETATM 6 O O1A ADP . . . B 2 -19.672 31.266 -23.627 1 55.52 ? O1A ADP 901 A 1 
HETATM 7 O O2A ADP . . . B 2 -21.258 32.897 -22.727 1 52.62 -1 O2A ADP 901 A 1 
HETATM 8 O O3A ADP . . . B 2 -19.345 33.68 -24.212 1 57.79 ? O3A ADP 901 A 1 
HETATM 9 O O5' ADP . . . B 2 -18.861 32.84 -21.789 1 54.59 ? O5' ADP 901 A 1 
HETATM 10 C C5' ADP . . . B 2 -17.553 32.24 -21.637 1 54.76 ? C5' ADP 901 A 1 
HETATM 11 C C4' ADP . . . B 2 -17.468 31.325 -20.435 1 54.4 ? C4' ADP 901 A 1 
HETATM 12 O O4' ADP . . . B 2 -17.519 32.104 -19.222 1 53.7 ? O4' ADP 901 A 1 
HETATM 13 C C3' ADP . . . B 2 -18.566 30.274 -20.306 1 55.09 ? C3' ADP 901 A 1 
HETATM 14 O O3' ADP . . . B 2 -18.205 29.075 -20.986 1 53.29 ? O3' ADP 901 A 1 
HETATM 15 C C2' ADP . . . B 2 -18.683 30.077 -18.791 1 58.1 ? C2' ADP 901 A 1 
HETATM 16 O O2' ADP . . . B 2 -17.796 29.086 -18.277 1 62.27 ? O2' ADP 901 A 1 
HETATM 17 C C1' ADP . . . B 2 -18.317 31.46 -18.245 1 54.94 ? C1' ADP 901 A 1 
HETATM 18 N N9 ADP . . . B 2 -19.451 32.321 -17.914 1 53.66 ? N9 ADP 901 A 1 
HETATM 19 C C8 ADP . . . B 2 -19.92 33.372 -18.656 1 53.97 ? C8 ADP 901 A 1 
HETATM 20 N N7 ADP . . . B 2 -20.878 34.053 -18.076 1 54.58 ? N7 ADP 901 A 1 
HETATM 21 C C5 ADP . . . B 2 -21.077 33.385 -16.879 1 54.5 ? C5 ADP 901 A 1 
HETATM 22 C C6 ADP . . . B 2 -22 33.576 -15.829 1 53.84 ? C6 ADP 901 A 1 
HETATM 23 N N6 ADP . . . B 2 -22.867 34.592 -15.782 1 52.02 ? N6 ADP 901 A 1 
HETATM 24 N N1 ADP . . . B 2 -21.979 32.689 -14.804 1 54.97 ? N1 ADP 901 A 1 
HETATM 25 C C2 ADP . . . B 2 -21.075 31.7 -14.824 1 56.08 ? C2 ADP 901 A 1 
HETATM 26 N N3 ADP . . . B 2 -20.147 31.43 -15.752 1 56.5 ? N3 ADP 901 A 1 
HETATM 27 C C4 ADP . . . B 2 -20.207 32.312 -16.765 1 54.86 ? C4 ADP 901 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#